Propagation of CcpA regulog to Paenibacillus sp. JDR-2
| Source regulog: | CcpA - Bacillales |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Carbon catabolism |
| Effector: | HPr, phosphocarrier protein |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Paenibacillus sp. JDR-2 |
| Orthologous TF(s) | Pjdr2_3800 |
| Regulated genes | 19 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -35
Score: 4.7 Sequence: ATGAAAGCGGTTTTTT
Locus tag: Pjdr2_0664
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| Pjdr2_0664 | -35 | 4.7 | ATGAAAGCGGTTTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rbsB | ||||
| Ortholog function: ABC-type sugar transport system, periplasmic component | ||||
| Bacillus halodurans C-125 | BH3448 | -19 | 4.6 | TTGAAAGGGGTTTCAT |
| Bacillus licheniformis DSM 13 | BLi00439 | -41 | 4.7 | TTGTAAACGCTGTCTT |
| Paenibacillus sp. JDR-2 | Pjdr2_0664 | -35 | 4.7 | ATGAAAGCGGTTTTTT |
|
Position: -8
Score: 4.6 Sequence: TTGTAAACGTGTTCAA
Locus tag: Pjdr2_0728
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| Pjdr2_0728 | -8 | 4.6 | TTGTAAACGTGTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: BH3680 | ||||
| Ortholog function: Predicted beta-xyloside ABC transporter, substrate-binding component | ||||
| Bacillus halodurans C-125 | BH3680 | 6 | 4.9 | AGGAAAACGCTTACAA |
| Oceanobacillus iheyensis HTE831 | OB3123 | 9 | 4.7 | AAGAAAGCGTTTACAG |
| Paenibacillus sp. JDR-2 | Pjdr2_0728 | -8 | 4.6 | TTGTAAACGTGTTCAA |
|
Position: 0
Score: 4.7 Sequence: ATGAAAGCGGTCACAA
Locus tag: Pjdr2_1934
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| Pjdr2_1934 | 0 | 4.7 | ATGAAAGCGGTCACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lplB | ||||
| Ortholog function: Transmembrane lipoprotein | ||||
| Bacillus clausii KSM-K16 | ABC1135 | 15 | 4.5 | AAGAAAGCGCATTCAG |
| Bacillus halodurans C-125 | BH1911 | 15 | 4.4 | GAGAAAGCGCATTCAA |
| Paenibacillus sp. JDR-2 | Pjdr2_1934 | 0 | 4.7 | ATGAAAGCGGTCACAA |
|
Position: -41
Score: 4.6 Sequence: ATGTAAACACTTACAT
Locus tag: Pjdr2_3535
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| Pjdr2_3535 | -41 | 4.6 | ATGTAAACACTTACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhiL | ||||
| Ortholog function: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein | ||||
| Bacillus licheniformis DSM 13 | BLi01368 | -37 | 4.5 | GAGTAAGCGTTTACAA |
| -30 | 4.8 | ATGTAAGCACTTACAA | ||
| Bacillus subtilis subsp. subtilis str. 168 | BSU06970 | -32 | 4.8 | ATGTAAGCACTTACAT |
| -20 | 4.6 | AAGTAAGCGCTTACAG | ||
| Paenibacillus sp. JDR-2 | Pjdr2_3535 | -41 | 4.6 | ATGTAAACACTTACAT |
|
Position: -56
Score: 5 Sequence: TTGAAAGCGTATTCTT
Locus tag: Pjdr2_3796
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| Pjdr2_3796 | -56 | 5 | TTGAAAGCGTATTCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acsA | ||||
| Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1) | ||||
| Anoxybacillus flavithermus WK1 | Aflv_0462 | 237 | 4.9 | ATGAAAGAGTTTTCAA |
| Bacillus amyloliquefaciens FZB42 | RBAM_026800 | -102 | 4.5 | TATAAAGCGTTTTCAA |
| Bacillus clausii KSM-K16 | ABC2760 | -65 | 4.7 | TTGAAAACGTTACCTT |
| 0 | 4.8 | ATGAAAGCGCTTCCTG | ||
| Bacillus halodurans C-125 | BH3234 | 6 | 4.4 | TTGCAAGCGCTTCCAG |
| Bacillus licheniformis DSM 13 | BLi03119 | 6 | 4.7 | TTGAAAGCGCTGCCAG |
| Bacillus pumilus SAFR-032 | BPUM_2616 | -30 | 4.7 | TTGTAAACGTATGCAA |
| Bacillus subtilis subsp. subtilis str. 168 | BSU29680 | -101 | 4.5 | TATAAAGCGTTTTCAA |
| 6 | 4.8 | TTGAAAGCGTTACCAG | ||
| Oceanobacillus iheyensis HTE831 | OB0022 | -36 | 4.5 | TTGTAATCGTTTGCAA |
| Paenibacillus sp. JDR-2 | Pjdr2_3796 | -56 | 5 | TTGAAAGCGTATTCTT |
|
Position: -124
Score: 4.3 Sequence: ATCATAACGCTTTCAA
Locus tag: Pjdr2_3908
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| Pjdr2_3908 | -124 | 4.3 | ATCATAACGCTTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yqgY | ||||
| Ortholog function: Uncharacterized short membrane protein | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_023110 | -73 | 4.8 | ATGAAAATGTTTACAT |
| Bacillus clausii KSM-K16 | ABC2500 | -76 | 4.4 | AAGAAAGCATTTACAA |
| Bacillus licheniformis DSM 13 | BLi02652 | -71 | 4.8 | ATGAAAATGTTTACAT |
| Bacillus pumilus SAFR-032 | BPUM_2208 | -76 | 4.6 | ATGTAAATGTTTACAT |
| Bacillus subtilis subsp. subtilis str. 168 | BSU24780 | -72 | 4.8 | ATGAAAATGTTTACAT |
| Oceanobacillus iheyensis HTE831 | OB1915 | -75 | 4.6 | ATAGAAACGTTTACAA |
| Paenibacillus sp. JDR-2 | Pjdr2_3908 | -124 | 4.3 | ATCATAACGCTTTCAA |
|
Position: 0
Score: 4.5 Sequence: ATGAAAAAGCTTTCTT
Locus tag: Pjdr2_3983
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| Pjdr2_3983 | 0 | 4.5 | ATGAAAAAGCTTTCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rbsB | ||||
| Ortholog function: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) | ||||
| Anoxybacillus flavithermus WK1 | Aflv_2668 | -34 | 4.5 | ATGTAACCGGTTACAG |
| Bacillus amyloliquefaciens FZB42 | RBAM_033130 | -33 | 5 | ATGTAAACGGTTACAT |
| Bacillus clausii KSM-K16 | ABC3544 | -33 | 4.1 | CTGTAACCGGTTACAT |
| Bacillus pumilus SAFR-032 | BPUM_3268 | -38 | 4.2 | GTGTAAACGGTTACAC |
| Bacillus subtilis subsp. subtilis str. 168 | BSU35960 | -34 | 5 | ATGTAAACGGTTACAT |
| Oceanobacillus iheyensis HTE831 | OB2572 | -68 | 4.8 | ATCAAAACGCTTTCAT |
| -40 | 4.1 | CTGAAACCGGTTCCAT | ||
|
Position: -242
Score: 4.4 Sequence: ATGAATACGCTTTAAA
Locus tag: Pjdr2_4724
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| Pjdr2_4724 | -242 | 4.4 | ATGAATACGCTTTAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: odhA | ||||
| Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_019130 | -101 | 4.7 | TTGGAAGCGTTTTTAT |
| Bacillus cereus ATCC 14579 | BC1252 | -101 | 4.3 | AAGAAAACATTTACAT |
| Bacillus clausii KSM-K16 | ABC2114 | -63 | 4.8 | TTGTAAGCGCTTGAAA |
| Bacillus halodurans C-125 | BH2206 | -64 | 5 | ATGAAAGCGTTATAAA |
| Bacillus licheniformis DSM 13 | BLi02260 | -100 | 4.3 | GTGGAAGCGTTTTTAT |
| Bacillus pumilus SAFR-032 | BPUM_1862 | -101 | 4.7 | TTGGAAGCGTTTTATT |
| Bacillus subtilis subsp. subtilis str. 168 | BSU19370 | -101 | 4.7 | TTGGAAGCGTTTTTAT |
| Geobacillus kaustophilus HTA426 | GK1023 | -123 | 4.1 | GTGAAAACGTTTATAC |
| Oceanobacillus iheyensis HTE831 | OB1089 | -51 | 4.3 | TTTGAACCGTTTTCAT |
| Paenibacillus sp. JDR-2 | Pjdr2_4724 | -242 | 4.4 | ATGAATACGCTTTAAA |
|
Position: -77
Score: 4.1 Sequence: ATGAAAGCGAATACTC
Locus tag: Pjdr2_5571
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| Pjdr2_5571 | -77 | 4.1 | ATGAAAGCGAATACTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Pjdr2_5571 | ||||
| Ortholog function: Predicted oxidoreductase | ||||
| Paenibacillus sp. JDR-2 | Pjdr2_5571 | -77 | 4.1 | ATGAAAGCGAATACTC |
|
Position: -236
Score: 4.5 Sequence: ATTATAGCGCTTACAA
Locus tag: Pjdr2_6054
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| Pjdr2_6054 | -236 | 4.5 | ATTATAGCGCTTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: iolJ | ||||
| Ortholog function: Fructose-bisphosphate aldolase class II (EC 4.1.2.13) | ||||
| Bacillus cereus ATCC 14579 | BC5335 | -184 | 4.5 | AAAAAAGCGTTTACAT |
| Paenibacillus sp. JDR-2 | Pjdr2_6054 | -236 | 4.5 | ATTATAGCGCTTACAA |
|
Position: -33
Score: 4.1 Sequence: AAGAAAGCGATTTTAT
Locus tag: Pjdr2_6226
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| Pjdr2_6226 | -33 | 4.1 | AAGAAAGCGATTTTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtlA | ||||
| Ortholog function: PTS family mannitol-permease II, BC component | ||||
| Anoxybacillus flavithermus WK1 | Aflv_1566 | -58 | 4.5 | CTGTAAGCGCTTTAAT |
| Bacillus amyloliquefaciens FZB42 | RBAM_004230 | -96 | 4.6 | TTGTAAGCGTTTTATG |
| Bacillus halodurans C-125 | BH3854 | -39 | 4.3 | ATGAGAGCGCTTTATT |
| Bacillus licheniformis DSM 13 | BLi00505 | -94 | 4.4 | CTGTAAGCGTTTTAAT |
| Bacillus pumilus SAFR-032 | BPUM_0369 | -106 | 4.1 | GTGAAAGCGTTTTACG |
| Bacillus subtilis subsp. subtilis str. 168 | BSU03981 | -95 | 4 | CTGTAAGCGTTTTAAC |
| Geobacillus kaustophilus HTA426 | GK1948 | -54 | 4.8 | TTGTAAGCGTTTTAAG |
| Oceanobacillus iheyensis HTE831 | OB2603 | -75 | 4.4 | TTGTAAGCGGATTCCT |
| Paenibacillus sp. JDR-2 | Pjdr2_6226 | -33 | 4.1 | AAGAAAGCGATTTTAT |