Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Paenibacillus sp. JDR-2

Reference regulog properties
Source regulog: CcpA - Bacillales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein
Phylum: Firmicutes
Propagated regulon:
Target genome Paenibacillus sp. JDR-2
Orthologous TF(s) Pjdr2_3800
Regulated genes 19
Built upon 559 sites [see more]
Predicted regulatory interactions in Paenibacillus sp. JDR-2
Locus tag Position Score Sequence
Position: -35
Score: 4.7
Sequence: ATGAAAGCGGTTTTTT
Locus tag: Pjdr2_0664
Pjdr2_0664 -35 4.7 ATGAAAGCGGTTTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsB
Ortholog function: ABC-type sugar transport system, periplasmic component
Bacillus halodurans C-125 BH3448 -19 4.6 TTGAAAGGGGTTTCAT
Bacillus licheniformis DSM 13 BLi00439 -41 4.7 TTGTAAACGCTGTCTT
Paenibacillus sp. JDR-2 Pjdr2_0664 -35 4.7 ATGAAAGCGGTTTTTT
Position: -8
Score: 4.6
Sequence: TTGTAAACGTGTTCAA
Locus tag: Pjdr2_0728
Pjdr2_0728 -8 4.6 TTGTAAACGTGTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH3680
Ortholog function: Predicted beta-xyloside ABC transporter, substrate-binding component
Bacillus halodurans C-125 BH3680 6 4.9 AGGAAAACGCTTACAA
Oceanobacillus iheyensis HTE831 OB3123 9 4.7 AAGAAAGCGTTTACAG
Paenibacillus sp. JDR-2 Pjdr2_0728 -8 4.6 TTGTAAACGTGTTCAA
Position: 0
Score: 4.7
Sequence: ATGAAAGCGGTCACAA
Locus tag: Pjdr2_1934
Pjdr2_1934 0 4.7 ATGAAAGCGGTCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lplB
Ortholog function: Transmembrane lipoprotein
Bacillus clausii KSM-K16 ABC1135 15 4.5 AAGAAAGCGCATTCAG
Bacillus halodurans C-125 BH1911 15 4.4 GAGAAAGCGCATTCAA
Paenibacillus sp. JDR-2 Pjdr2_1934 0 4.7 ATGAAAGCGGTCACAA
Position: -41
Score: 4.6
Sequence: ATGTAAACACTTACAT
Locus tag: Pjdr2_3535
Pjdr2_3535 -41 4.6 ATGTAAACACTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiL
Ortholog function: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
Bacillus licheniformis DSM 13 BLi01368 -37 4.5 GAGTAAGCGTTTACAA
-30 4.8 ATGTAAGCACTTACAA
Bacillus subtilis subsp. subtilis str. 168 BSU06970 -32 4.8 ATGTAAGCACTTACAT
-20 4.6 AAGTAAGCGCTTACAG
Paenibacillus sp. JDR-2 Pjdr2_3535 -41 4.6 ATGTAAACACTTACAT
Position: -56
Score: 5
Sequence: TTGAAAGCGTATTCTT
Locus tag: Pjdr2_3796
Pjdr2_3796 -56 5 TTGAAAGCGTATTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acsA
Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Anoxybacillus flavithermus WK1 Aflv_0462 237 4.9 ATGAAAGAGTTTTCAA
Bacillus amyloliquefaciens FZB42 RBAM_026800 -102 4.5 TATAAAGCGTTTTCAA
Bacillus clausii KSM-K16 ABC2760 -65 4.7 TTGAAAACGTTACCTT
0 4.8 ATGAAAGCGCTTCCTG
Bacillus halodurans C-125 BH3234 6 4.4 TTGCAAGCGCTTCCAG
Bacillus licheniformis DSM 13 BLi03119 6 4.7 TTGAAAGCGCTGCCAG
Bacillus pumilus SAFR-032 BPUM_2616 -30 4.7 TTGTAAACGTATGCAA
Bacillus subtilis subsp. subtilis str. 168 BSU29680 -101 4.5 TATAAAGCGTTTTCAA
6 4.8 TTGAAAGCGTTACCAG
Oceanobacillus iheyensis HTE831 OB0022 -36 4.5 TTGTAATCGTTTGCAA
Paenibacillus sp. JDR-2 Pjdr2_3796 -56 5 TTGAAAGCGTATTCTT
Position: -124
Score: 4.3
Sequence: ATCATAACGCTTTCAA
Locus tag: Pjdr2_3908
Pjdr2_3908 -124 4.3 ATCATAACGCTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqgY
Ortholog function: Uncharacterized short membrane protein
Bacillus amyloliquefaciens FZB42 RBAM_023110 -73 4.8 ATGAAAATGTTTACAT
Bacillus clausii KSM-K16 ABC2500 -76 4.4 AAGAAAGCATTTACAA
Bacillus licheniformis DSM 13 BLi02652 -71 4.8 ATGAAAATGTTTACAT
Bacillus pumilus SAFR-032 BPUM_2208 -76 4.6 ATGTAAATGTTTACAT
Bacillus subtilis subsp. subtilis str. 168 BSU24780 -72 4.8 ATGAAAATGTTTACAT
Oceanobacillus iheyensis HTE831 OB1915 -75 4.6 ATAGAAACGTTTACAA
Paenibacillus sp. JDR-2 Pjdr2_3908 -124 4.3 ATCATAACGCTTTCAA
Position: 0
Score: 4.5
Sequence: ATGAAAAAGCTTTCTT
Locus tag: Pjdr2_3983
Pjdr2_3983 0 4.5 ATGAAAAAGCTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsB
Ortholog function: Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Anoxybacillus flavithermus WK1 Aflv_2668 -34 4.5 ATGTAACCGGTTACAG
Bacillus amyloliquefaciens FZB42 RBAM_033130 -33 5 ATGTAAACGGTTACAT
Bacillus clausii KSM-K16 ABC3544 -33 4.1 CTGTAACCGGTTACAT
Bacillus pumilus SAFR-032 BPUM_3268 -38 4.2 GTGTAAACGGTTACAC
Bacillus subtilis subsp. subtilis str. 168 BSU35960 -34 5 ATGTAAACGGTTACAT
Oceanobacillus iheyensis HTE831 OB2572 -68 4.8 ATCAAAACGCTTTCAT
-40 4.1 CTGAAACCGGTTCCAT
Position: -242
Score: 4.4
Sequence: ATGAATACGCTTTAAA
Locus tag: Pjdr2_4724
Pjdr2_4724 -242 4.4 ATGAATACGCTTTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: odhA
Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Bacillus amyloliquefaciens FZB42 RBAM_019130 -101 4.7 TTGGAAGCGTTTTTAT
Bacillus cereus ATCC 14579 BC1252 -101 4.3 AAGAAAACATTTACAT
Bacillus clausii KSM-K16 ABC2114 -63 4.8 TTGTAAGCGCTTGAAA
Bacillus halodurans C-125 BH2206 -64 5 ATGAAAGCGTTATAAA
Bacillus licheniformis DSM 13 BLi02260 -100 4.3 GTGGAAGCGTTTTTAT
Bacillus pumilus SAFR-032 BPUM_1862 -101 4.7 TTGGAAGCGTTTTATT
Bacillus subtilis subsp. subtilis str. 168 BSU19370 -101 4.7 TTGGAAGCGTTTTTAT
Geobacillus kaustophilus HTA426 GK1023 -123 4.1 GTGAAAACGTTTATAC
Oceanobacillus iheyensis HTE831 OB1089 -51 4.3 TTTGAACCGTTTTCAT
Paenibacillus sp. JDR-2 Pjdr2_4724 -242 4.4 ATGAATACGCTTTAAA
Position: -77
Score: 4.1
Sequence: ATGAAAGCGAATACTC
Locus tag: Pjdr2_5571
Pjdr2_5571 -77 4.1 ATGAAAGCGAATACTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: Pjdr2_5571
Ortholog function: Predicted oxidoreductase
Paenibacillus sp. JDR-2 Pjdr2_5571 -77 4.1 ATGAAAGCGAATACTC
Position: -236
Score: 4.5
Sequence: ATTATAGCGCTTACAA
Locus tag: Pjdr2_6054
Pjdr2_6054 -236 4.5 ATTATAGCGCTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: iolJ
Ortholog function: Fructose-bisphosphate aldolase class II (EC 4.1.2.13)
Bacillus cereus ATCC 14579 BC5335 -184 4.5 AAAAAAGCGTTTACAT
Paenibacillus sp. JDR-2 Pjdr2_6054 -236 4.5 ATTATAGCGCTTACAA
Position: -33
Score: 4.1
Sequence: AAGAAAGCGATTTTAT
Locus tag: Pjdr2_6226
Pjdr2_6226 -33 4.1 AAGAAAGCGATTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: PTS family mannitol-permease II, BC component
Anoxybacillus flavithermus WK1 Aflv_1566 -58 4.5 CTGTAAGCGCTTTAAT
Bacillus amyloliquefaciens FZB42 RBAM_004230 -96 4.6 TTGTAAGCGTTTTATG
Bacillus halodurans C-125 BH3854 -39 4.3 ATGAGAGCGCTTTATT
Bacillus licheniformis DSM 13 BLi00505 -94 4.4 CTGTAAGCGTTTTAAT
Bacillus pumilus SAFR-032 BPUM_0369 -106 4.1 GTGAAAGCGTTTTACG
Bacillus subtilis subsp. subtilis str. 168 BSU03981 -95 4 CTGTAAGCGTTTTAAC
Geobacillus kaustophilus HTA426 GK1948 -54 4.8 TTGTAAGCGTTTTAAG
Oceanobacillus iheyensis HTE831 OB2603 -75 4.4 TTGTAAGCGGATTCCT
Paenibacillus sp. JDR-2 Pjdr2_6226 -33 4.1 AAGAAAGCGATTTTAT
© 2009-2020 RegPrecise