Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of RmgR regulog to Paenibacillus sp. JDR-2

Reference regulog properties
Source regulog: RmgR - Bacillales
Regulator type: Transcription factor
Regulator family: AraC
Regulation mode: activator
Biological process: Rhamnogalacturonides utilization
Phylum: Firmicutes
Propagated regulon:
Target genome Paenibacillus sp. JDR-2
Orthologous TF(s) Pjdr2_1800
Regulated genes 1
Built upon 10 sites [see more]
Predicted regulatory interactions in Paenibacillus sp. JDR-2
Locus tag Position Score Sequence
Position: -141
Score: 6.7
Sequence: TCAATT-(13)-TCATTA
Position: -140
Score: 5.7
Sequence: CAATTT-(12)-TCATTA
Locus tag: Pjdr2_1802
Pjdr2_1802 -141 6.7 TCAATT-(13)-TCATTA
-140 5.7 CAATTT-(12)-TCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytcQ
Ortholog function: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component
Bacillus clausii KSM-K16 ABC1144 -174 5.3 TCATTT-(13)-gCAaaT
Paenibacillus sp. JDR-2 Pjdr2_1802 -141 6.7 TCAATT-(13)-TCATTA