Regulog RmgR - Bacillales
| Regulator type: | Transcription factor |
| Regulator family: | AraC |
| Regulation mode: | activator |
| Biological process: | Rhamnogalacturonides utilization |
| Effector: | |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bacillales
- By TF family - AraC
- By pathway - Rhamnogalacturonides utilization
| Genome | Genes | Operons |
|---|---|---|
| Bacillus subtilis subsp. subtilis str. 168 | 7 | 2 |
| Bacillus amyloliquefaciens FZB42 | ||
| Bacillus pumilus SAFR-032 | 5 | 1 |
| Bacillus licheniformis DSM 13 | 7 | 2 |
| Anoxybacillus flavithermus WK1 | ||
| Geobacillus kaustophilus HTA426 | ||
| Bacillus cereus ATCC 14579 | ||
| Bacillus halodurans C-125 | 11 | 1 |
| Bacillus clausii KSM-K16 | 11 | 1 |
| Oceanobacillus iheyensis HTE831 | 7 | 1 |
| Paenibacillus sp. JDR-2 | 3 | 1 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| yteP |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -154 score = 7.68228 sequence = TCATTT-(13)-TCTTTT Gene: BSU30135: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1 |
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Bacillus pumilus SAFR-032 Site: position = -223 score = 6.71262 sequence = CCATTT-(12)-TCTTTT Site: position = -155 score = 8.18621 sequence = TCATTT-(13)-TCATTT Gene: BPUM_2660: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1 |
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Bacillus licheniformis DSM 13 Site: position = -139 score = 8.18621 sequence = TCATTT-(13)-TCATTT Gene: BLi03166: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1 |
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Bacillus halodurans C-125 Site: position = -155 score = 7.68228 sequence = TCATTA-(13)-TCATTT Gene: BH0484: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1 |
Gene: ABC1145: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1 |
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Oceanobacillus iheyensis HTE831 Site: position = -169 score = 6.71262 sequence = TCAATT-(12)-TCATTA Gene: OB2090: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1 |
Gene: Pjdr2_1803: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1 |
Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1 |
| rhiN2 |
Gene: BSU30120: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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Gene: BPUM_2659: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
Gene: BLi03165: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
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Gene: BH0485: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
Gene: ABC1149: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
Gene: OB2086: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
Gene: Pjdr2_3961: Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
Rhamnogalacturonyl hydrolase (EC 3.2.1.172) |
| yteS |
Gene: BSU30110: putative lipoprotein required for rhamnogalaturonan degradation |
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Gene: BPUM_2658: putative lipoprotein required for rhamnogalaturonan degradation |
Gene: BLi03164: putative lipoprotein required for rhamnogalaturonan degradation |
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Gene: BH0486: putative lipoprotein required for rhamnogalaturonan degradation |
Gene: ABC1150: putative lipoprotein required for rhamnogalaturonan degradation |
Gene: OB2085: putative lipoprotein required for rhamnogalaturonan degradation |
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putative lipoprotein required for rhamnogalaturonan degradation |
| yteT |
Gene: BSU30100: Putative dehydrogenase of rhamnogalaturonan degradation |
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Gene: BPUM_2657: Putative dehydrogenase of rhamnogalaturonan degradation |
Gene: BLi03163: Putative dehydrogenase of rhamnogalaturonan degradation |
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Gene: BH0487: Putative dehydrogenase of rhamnogalaturonan degradation |
Gene: ABC1152: Putative dehydrogenase of rhamnogalaturonan degradation |
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Putative dehydrogenase of rhamnogalaturonan degradation |
| yteU |
Gene: BSU30090: Putative membrane enzyme for rhamnogalaturonan degradation |
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Gene: BPUM_2656: Putative membrane enzyme for rhamnogalaturonan degradation |
Gene: BLi03162: Putative membrane enzyme for rhamnogalaturonan degradation |
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Gene: BH0488: Putative membrane enzyme for rhamnogalaturonan degradation |
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Putative membrane enzyme for rhamnogalaturonan degradation |
| ybaS |
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Gene: BH0489: Sodium dependent transporter |
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Sodium dependent transporter |
| uxaA |
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Gene: BH0490: Altronate hydrolase (EC 4.2.1.7) |
Gene: ABC1153: Altronate hydrolase (EC 4.2.1.7) |
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Altronate hydrolase (EC 4.2.1.7) |
| BH0491 |
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Gene: BH0491: Putative peptidase |
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Putative peptidase |
| uxaB |
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Gene: BH0492: Altronate oxidoreductase (EC 1.1.1.58) |
Gene: ABC1154: Altronate oxidoreductase (EC 1.1.1.58) |
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Altronate oxidoreductase (EC 1.1.1.58) |
| BH0493 |
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Gene: BH0493: Uronate isomerase, family BH0493 (EC 5.3.1.12) |
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Uronate isomerase, family BH0493 (EC 5.3.1.12) |
| pelX |
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Gene: BH0494: Exopolygalacturonate lyase |
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Exopolygalacturonate lyase |
| ytcQ |
Gene: BSU30160: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component |
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Gene: BPUM_2665: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component |
Gene: BLi03168: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component |
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Gene: BH0482: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component |
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Bacillus clausii KSM-K16 Site: position = -174 score = 5.27723 sequence = TCATTT-(13)-gCAaaT Gene: ABC1144: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component |
Gene: OB2091: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component |
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Paenibacillus sp. JDR-2 Site: position = -141 score = 6.71262 sequence = TCAATT-(13)-TCATTA Gene: Pjdr2_1802: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component |
Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component |
| ytcP |
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Bacillus subtilis subsp. subtilis str. 168 Site: position = -206 score = 7.68228 sequence = TCATTT-(13)-TCTTTT Gene: BSU30170: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2 |
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Gene: BPUM_2666: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2 |
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Bacillus licheniformis DSM 13 Site: position = -208 score = 6.71262 sequence = TCATCT-(13)-TCTTTT Gene: BLi03169: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2 |
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Gene: BH0481: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2 |
Gene: ABC1146: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2 |
Gene: OB2089: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2 |
Gene: Pjdr2_1804: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2 |
Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2 |
| ABC1147 |
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Gene: ABC1147: Putative hydrolase |
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Putative hydrolase |
| xylB |
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Gene: ABC1148: Beta-xylosidase (EC 3.2.1.37) |
Gene: OB2087: Beta-xylosidase (EC 3.2.1.37) |
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Beta-xylosidase (EC 3.2.1.37) |
| ABC1151 |
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Gene: ABC1151: Hypothetical protein |
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Hypothetical protein |
| pglR |
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Gene: OB2088: Polygalacturonase |
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Polygalacturonase |
| rhgT |
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Gene: OB2084: Rhamnogalacturonan acetylesterase |
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Rhamnogalacturonan acetylesterase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |