Regulog RmgR - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	AraC
Regulation mode:	activator
Biological process:	Rhamnogalacturonides utilization
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 10 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - AraC
By pathway - Rhamnogalacturonides utilization

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	7	2
Bacillus amyloliquefaciens FZB42
Bacillus pumilus SAFR-032	5	1
Bacillus licheniformis DSM 13	7	2
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579
Bacillus halodurans C-125	11	1
Bacillus clausii KSM-K16	11	1
Oceanobacillus iheyensis HTE831	7	1
Paenibacillus sp. JDR-2	3	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
yteP	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -154 score = 7.68228 sequence = TCATTT-(13)-TCTTTT Gene: BSU30135: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1	Bacillus amyloliquefaciens FZB42	* Bacillus pumilus SAFR-032 Site: position = -223 score = 6.71262 sequence = CCATTT-(12)-TCTTTT Site: position = -155 score = 8.18621 sequence = TCATTT-(13)-TCATTT Gene: BPUM_2660: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1	* Bacillus licheniformis DSM 13 Site: position = -139 score = 8.18621 sequence = TCATTT-(13)-TCATTT Gene: BLi03166: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	* Bacillus halodurans C-125 Site: position = -155 score = 7.68228 sequence = TCATTA-(13)-TCATTT Gene: BH0484: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1	Bacillus clausii KSM-K16 Gene: ABC1145: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1	* Oceanobacillus iheyensis HTE831 Site: position = -169 score = 6.71262 sequence = TCAATT-(12)-TCATTA Gene: OB2090: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1	Paenibacillus sp. JDR-2 Gene: Pjdr2_1803: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1	Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1
rhiN2	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU30120: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032 Gene: BPUM_2659: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Bacillus licheniformis DSM 13 Gene: BLi03165: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0485: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Bacillus clausii KSM-K16 Gene: ABC1149: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Oceanobacillus iheyensis HTE831 Gene: OB2086: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Paenibacillus sp. JDR-2 Gene: Pjdr2_3961: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)	Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
yteS	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU30110: putative lipoprotein required for rhamnogalaturonan degradation	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032 Gene: BPUM_2658: putative lipoprotein required for rhamnogalaturonan degradation	Bacillus licheniformis DSM 13 Gene: BLi03164: putative lipoprotein required for rhamnogalaturonan degradation	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0486: putative lipoprotein required for rhamnogalaturonan degradation	Bacillus clausii KSM-K16 Gene: ABC1150: putative lipoprotein required for rhamnogalaturonan degradation	Oceanobacillus iheyensis HTE831 Gene: OB2085: putative lipoprotein required for rhamnogalaturonan degradation	Paenibacillus sp. JDR-2	putative lipoprotein required for rhamnogalaturonan degradation
yteT	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU30100: Putative dehydrogenase of rhamnogalaturonan degradation	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032 Gene: BPUM_2657: Putative dehydrogenase of rhamnogalaturonan degradation	Bacillus licheniformis DSM 13 Gene: BLi03163: Putative dehydrogenase of rhamnogalaturonan degradation	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0487: Putative dehydrogenase of rhamnogalaturonan degradation	Bacillus clausii KSM-K16 Gene: ABC1152: Putative dehydrogenase of rhamnogalaturonan degradation	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Putative dehydrogenase of rhamnogalaturonan degradation
yteU	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU30090: Putative membrane enzyme for rhamnogalaturonan degradation	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032 Gene: BPUM_2656: Putative membrane enzyme for rhamnogalaturonan degradation	Bacillus licheniformis DSM 13 Gene: BLi03162: Putative membrane enzyme for rhamnogalaturonan degradation	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0488: Putative membrane enzyme for rhamnogalaturonan degradation	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Putative membrane enzyme for rhamnogalaturonan degradation
ybaS	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0489: Sodium dependent transporter	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Sodium dependent transporter
uxaA	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0490: Altronate hydrolase (EC 4.2.1.7)	Bacillus clausii KSM-K16 Gene: ABC1153: Altronate hydrolase (EC 4.2.1.7)	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Altronate hydrolase (EC 4.2.1.7)
BH0491	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0491: Putative peptidase	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Putative peptidase
uxaB	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0492: Altronate oxidoreductase (EC 1.1.1.58)	Bacillus clausii KSM-K16 Gene: ABC1154: Altronate oxidoreductase (EC 1.1.1.58)	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Altronate oxidoreductase (EC 1.1.1.58)
BH0493	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0493: Uronate isomerase, family BH0493 (EC 5.3.1.12)	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Uronate isomerase, family BH0493 (EC 5.3.1.12)
pelX	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0494: Exopolygalacturonate lyase	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Exopolygalacturonate lyase
ytcQ	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU30160: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032 Gene: BPUM_2665: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component	Bacillus licheniformis DSM 13 Gene: BLi03168: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0482: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component	* Bacillus clausii KSM-K16 Site: position = -174 score = 5.27723 sequence = TCATTT-(13)-gCAaaT Gene: ABC1144: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component	Oceanobacillus iheyensis HTE831 Gene: OB2091: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component	* Paenibacillus sp. JDR-2 Site: position = -141 score = 6.71262 sequence = TCAATT-(13)-TCATTA Gene: Pjdr2_1802: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component	Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component
ytcP	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -206 score = 7.68228 sequence = TCATTT-(13)-TCTTTT Gene: BSU30170: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032 Gene: BPUM_2666: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2	* Bacillus licheniformis DSM 13 Site: position = -208 score = 6.71262 sequence = TCATCT-(13)-TCTTTT Gene: BLi03169: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125 Gene: BH0481: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2	Bacillus clausii KSM-K16 Gene: ABC1146: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2	Oceanobacillus iheyensis HTE831 Gene: OB2089: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2	Paenibacillus sp. JDR-2 Gene: Pjdr2_1804: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2	Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2
ABC1147	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16 Gene: ABC1147: Putative hydrolase	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Putative hydrolase
xylB	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16 Gene: ABC1148: Beta-xylosidase (EC 3.2.1.37)	Oceanobacillus iheyensis HTE831 Gene: OB2087: Beta-xylosidase (EC 3.2.1.37)	Paenibacillus sp. JDR-2	Beta-xylosidase (EC 3.2.1.37)
ABC1151	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16 Gene: ABC1151: Hypothetical protein	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Hypothetical protein
pglR	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831 Gene: OB2088: Polygalacturonase	Paenibacillus sp. JDR-2	Polygalacturonase
rhgT	Bacillus subtilis subsp. subtilis str. 168	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831 Gene: OB2084: Rhamnogalacturonan acetylesterase	Paenibacillus sp. JDR-2	Rhamnogalacturonan acetylesterase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RmgR - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --