Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Rex regulog to Paenibacillus sp. JDR-2

Reference regulog properties
Source regulog: Rex - Bacillales
Regulator type: Transcription factor
Regulator family: Rex
Regulation mode: repressor
Biological process: Energy metabolism
Effector: NADH
Phylum: Firmicutes
Propagated regulon:
Target genome Paenibacillus sp. JDR-2
Orthologous TF(s) Pjdr2_2450
Regulated genes 4
Built upon 64 sites [see more]
Predicted regulatory interactions in Paenibacillus sp. JDR-2
Locus tag Position Score Sequence
Position: -84
Score: 6
Sequence: TTTGTGCATCAATTCACAAA
Locus tag: Pjdr2_0068
Pjdr2_0068 -84 6 TTTGTGCATCAATTCACAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nadA
Ortholog function: Quinolinate synthetase (EC 4.1.99.-)
Paenibacillus sp. JDR-2 Pjdr2_0068 -84 6 TTTGTGCATCAATTCACAAA
Position: -207
Score: 5.8
Sequence: ATTGTGAATTAATTCACACA
Locus tag: Pjdr2_2160
Pjdr2_2160 -207 5.8 ATTGTGAATTAATTCACACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: noxE
Ortholog function: NADH oxidase (EC 1.6.99.3)
Paenibacillus sp. JDR-2 Pjdr2_2160 -273 4.8 TATGTGAAATTAATCACAAC
-207 5.8 ATTGTGAATTAATTCACACA
-42 4.8 TATGTGAATAATTTCACAGG
Position: -64
Score: 5.7
Sequence: ATTGTGTAATTTTTCACAAA
Locus tag: Pjdr2_4834
Pjdr2_4834 -64 5.7 ATTGTGTAATTTTTCACAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh2
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Bacillus licheniformis DSM 13 BLi03392 -119 4.9 AAAGTGAAGGGTTTCACAAA
Anoxybacillus flavithermus WK1 Aflv_2402 -76 5.5 TTCGTGAATAAATTCACAAA
Geobacillus kaustophilus HTA426 GK2953 -102 5.6 AACGTGAATTATTTCACAAA
Bacillus clausii KSM-K16 ABC2924 -55 4.8 AAAGTGAAATGAATCACAAA
Paenibacillus sp. JDR-2 Pjdr2_4834 -64 5.7 ATTGTGTAATTTTTCACAAA
Position: -97
Score: 5.4
Sequence: ATTGTGAATAATTTCACTTT
Locus tag: Pjdr2_6270
Pjdr2_6270 -97 5.4 ATTGTGAATAATTTCACTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjlC
Ortholog function: Hypothetical protein
Bacillus subtilis subsp. subtilis str. 168 BSU12280 -113 6 ATTGTGCATGAATTCACAAT
Bacillus amyloliquefaciens FZB42 RBAM_012360 -110 6 ATTGTGCATGAATTCACAAT
Bacillus licheniformis DSM 13 BLi02135 -80 6 TTTGTGCATAAATTCACAAA
Bacillus cereus ATCC 14579 BC5060 -82 4.8 TTTGTGAAACTTTGTATAAA
Paenibacillus sp. JDR-2 Pjdr2_6270 -97 5.4 ATTGTGAATAATTTCACTTT
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