Propagation of TnrA regulog to Paenibacillus sp. JDR-2

Reference regulog properties
Source regulog:	TnrA - Bacillales
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	repressor (activator)
Biological process:	Nitrogen assimilation
Effector:	NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase
Phylum:	Firmicutes
Propagated regulon:
Target genome	Paenibacillus sp. JDR-2
Orthologous TF(s)	Pjdr2_5154
Regulated genes	26

Built upon 304 sites [see more]

Predicted regulatory interactions in *Paenibacillus sp. JDR-2*
	Locus tag	Position	Score	Sequence
Position: -286 Score: 4.2 Sequence: TCTTATATTTTCTTTCA Locus tag: Pjdr2_0557
	Pjdr2_0557	-286	4.2	TCTTATATTTTCTTTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: urtA
Ortholog function: Urea ABC transporter, urea binding protein
Geobacillus kaustophilus HTA426	GK1937	-224	4.3	TGATAATAAATATAACA
		-201	5.2	TGTAATAAAATGTGACA
Bacillus halodurans C-125	BH0251	-192	4.5	TGTTATCTTTGATGACA
		-157	5	TGTTAGAAAAGATTACA
		-88	4.4	TGTAACGATTTCTAACG
Paenibacillus sp. JDR-2	Pjdr2_0557	-286	4.2	TCTTATATTTTCTTTCA
		-113	3.9	TGTCATGTATATTGACG

Position: -34 Score: 4.5 Sequence: TGTTAGTAAACATCACA Locus tag: Pjdr2_2141
	Pjdr2_2141	-34	4.5	TGTTAGTAAACATCACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrgA
Ortholog function: Ammonium transporter
Anoxybacillus flavithermus WK1	Aflv_1332	-112	4.6	TGTCATGAAAAATAACA
		-49	4.8	TGTAATATATTATAACC
		-27	5	TGTTATAAAAAATGACA
Geobacillus kaustophilus HTA426	GK1452	-124	4.4	TGTTAAGAAATTTAACA
		-48	5.4	TGTTATATATTATGACA
Bacillus halodurans C-125	BH3834	-138	4	TGTCAGATATAGGCACA
		-113	4.9	TGTCTGATTATCTGACA
		-41	4.3	TATTAGAAAAACTTACA
Bacillus clausii KSM-K16	ABC3928	-84	5.2	TGTTAGATATCCTGACA
Paenibacillus sp. JDR-2	Pjdr2_2141	-159	4.2	TGTGAAAAAACTTAACA
		-34	4.5	TGTTAGTAAACATCACA

Position: -223 Score: 4 Sequence: TGTCAATAAACTTAACA Position: -159 Score: 4 Sequence: TGTGACCTATATTGACA Locus tag: Pjdr2_2174
	Pjdr2_2174	-223	4	TGTCAATAAACTTAACA
		-159	4	TGTGACCTATATTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moeA
Ortholog function: Molybdenum cofactor synthesis domain protein
Paenibacillus sp. JDR-2	Pjdr2_2174	-223	4	TGTCAATAAACTTAACA
		-159	4	TGTGACCTATATTGACA

Position: -11 Score: 4.5 Sequence: TGATATAAAAAGTGACA Locus tag: Pjdr2_2655
	Pjdr2_2655	-11	4.5	TGATATAAAAAGTGACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: thyB
Ortholog function: Thymidylate synthase (EC 2.1.1.45)
Anoxybacillus flavithermus WK1	Aflv_1455	-43	5	TGTCATAATAAATGACA
Oceanobacillus iheyensis HTE831	OB1740	-98	4	TTTACGATTATGTAACA
Paenibacillus sp. JDR-2	Pjdr2_2655	-11	4.5	TGATATAAAAAGTGACA

Position: -63 Score: 4.7 Sequence: TGTTATCTAACCTAACA Locus tag: Pjdr2_2874
	Pjdr2_2874	-63	4.7	TGTTATCTAACCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnQ
Ortholog function: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Bacillus subtilis subsp. subtilis str. 168	BSU27430	-28	4	GGTCAAATTTTCTGATA
Bacillus amyloliquefaciens FZB42	RBAM_024530	-123	3.5	TATCAGAAATTACGAAA
Bacillus pumilus SAFR-032	BPUM_2382	-93	3.8	TGTTAAAAATGAATACA
Bacillus clausii KSM-K16	ABC0770	-8	3.4	GGACAGCAATGATCACA
Paenibacillus sp. JDR-2	Pjdr2_2874	-63	4.7	TGTTATCTAACCTAACA

Position: -96 Score: 4.3 Sequence: TGTAAGATATATTGACG Locus tag: Pjdr2_3323
	Pjdr2_3323	-96	4.3	TGTAAGATATATTGACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: Pjdr2_3323
Ortholog function: Basic membrane lipoprotein
Paenibacillus sp. JDR-2	Pjdr2_3323	-179	4.1	TGTGATCTATTGTTACG
		-96	4.3	TGTAAGATATATTGACG

Position: -55 Score: 4.9 Sequence: TGTTATATAAAGTAACA Locus tag: Pjdr2_3327
	Pjdr2_3327	-55	4.9	TGTTATATAAAGTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ABC3809
Ortholog function: Hypothetical protein
Paenibacillus sp. JDR-2	Pjdr2_3327	-55	4.9	TGTTATATAAAGTAACA

Position: -169 Score: 4.9 Sequence: TGTTATGAAATGTAACA Locus tag: Pjdr2_3622
	Pjdr2_3622	-169	4.9	TGTTATGAAATGTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Pjdr2_6134
Ortholog function: Cytosine deaminase (EC 3.5.4.1)
Paenibacillus sp. JDR-2	Pjdr2_3622	-169	4.9	TGTTATGAAATGTAACA
		-31	3.9	AGTTAACAAATGTGACA

Position: -84 Score: 5.2 Sequence: TGTCATATTACCTAACA Locus tag: Pjdr2_4328
	Pjdr2_4328	-84	5.2	TGTCATATTACCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ureA
Ortholog function: Urease gamma subunit (EC 3.5.1.5)
Geobacillus kaustophilus HTA426	GK1932	-224	4.3	TGATAATAAATATAACA
		-201	5.2	TGTAATAAAATGTGACA
Paenibacillus sp. JDR-2	Pjdr2_4328	-84	5.2	TGTCATATTACCTAACA

Position: -39 Score: 3.9 Sequence: TGTAAGATTATACACAA Locus tag: Pjdr2_4626
	Pjdr2_4626	-39	3.9	TGTAAGATTATACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywdK
Ortholog function: Uncharacterized small membrane protein
Bacillus subtilis subsp. subtilis str. 168	BSU37930	-53	5.1	TGTCAGAAAAAATAACA
Bacillus amyloliquefaciens FZB42	RBAM_035180	-92	4.7	CGTCAGAAAAAATAACA
Paenibacillus sp. JDR-2	Pjdr2_4626	-39	3.9	TGTAAGATTATACACAA

Position: -255 Score: 4.6 Sequence: GGTGAGAAAATGTTACA Locus tag: Pjdr2_4828
	Pjdr2_4828	-255	4.6	GGTGAGAAAATGTTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: appA
Ortholog function: Oligopeptide ABC transporter (substrate-binding)
Bacillus amyloliquefaciens FZB42	RBAM_011380	-101	4.1	TGTAATAATATACAACT
Paenibacillus sp. JDR-2	Pjdr2_4828	-255	4.6	GGTGAGAAAATGTTACA

Position: -302 Score: 5.7 Sequence: TGTTAGATAATCTAACA Position: -41 Score: 5 Sequence: TGTTAGAAAACATTACA Locus tag: Pjdr2_5154
	Pjdr2_5154	-302	5.7	TGTTAGATAATCTAACA
		-41	5	TGTTAGAAAACATTACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tnrA
Ortholog function: Transcriptional regulator of nitrogen assimilation, MerR family
Bacillus subtilis subsp. subtilis str. 168	BSU13310	-124	3.9	TGTTAATTTTTCTTCCG
		-81	5.5	TGTTAGAAAATATGACA
Bacillus amyloliquefaciens FZB42	RBAM_013130	-124	4.1	TGTCAATTTTTCTGCCG
		-81	4.8	CGTCAGAAAACCTGACA
Bacillus pumilus SAFR-032	BPUM_1230	-121	4	TGTCAACTTTCCTTCCA
		-80	5.5	TGTTATATTTTCTAACA
Bacillus licheniformis DSM 13	BLi01490	-124	3.8	TGTAAACTTTTCTTCCG
		-81	5.6	TGTTAGATTTTCTGACA
Anoxybacillus flavithermus WK1	Aflv_1544	-113	4.9	TGTTACTTTTTATAACA
		-82	4.9	TGTTACTTTTTATAACA
		-27	5.4	TGTTATAAAATATGACA
Geobacillus kaustophilus HTA426	GK1860	-86	3.9	TGTTAATTTTATTTACA
		-33	4.6	CGTTAGAAAATATAACG
Bacillus halodurans C-125	BH1494	-110	5.5	TGTAAGAAAATCTAACA
Bacillus clausii KSM-K16	ABC1760	-99	5.5	TGTTAGATTTTCTTACA
		-57	5	TGTGATATATTGTTACA
Oceanobacillus iheyensis HTE831	OB1650	-80	5.1	TGTTAGAAATACTAACA
		-57	4.3	TGACATATAAGCTGACG
Paenibacillus sp. JDR-2	Pjdr2_5154	-302	5.7	TGTTAGATAATCTAACA
		-41	5	TGTTAGAAAACATTACA

Position: -183 Score: 4.4 Sequence: TGGTATATTAATTAACA Locus tag: Pjdr2_5833
	Pjdr2_5833	-183	4.4	TGGTATATTAATTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: oppA
Ortholog function: Oligopeptide ABC transporter (binding lipoprotein)
Paenibacillus sp. JDR-2	Pjdr2_5833	-183	4.4	TGGTATATTAATTAACA

Position: -34 Score: 3.6 Sequence: GGTTAGTAAACCTGACT Locus tag: Pjdr2_5903
	Pjdr2_5903	-34	3.6	GGTTAGTAAACCTGACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywrD
Ortholog function: Gamma-glutamyltranspeptidase (EC 2.3.2.2)
Bacillus subtilis subsp. subtilis str. 168	BSU36100	-83	4	CGTCAGTTTTTCTGCCG
Bacillus amyloliquefaciens FZB42	RBAM_033270	-78	4.9	TGTGAGATTTTCTTTCA
Bacillus licheniformis DSM 13	BLi03850	-167	3.6	TTTTGTAAATTGTATCA
		-91	3.8	CGTTAGTTTTTCTTCCC
Paenibacillus sp. JDR-2	Pjdr2_5903	-34	3.6	GGTTAGTAAACCTGACT

Position: -310 Score: 5 Sequence: TGTTATTATATATAACA Locus tag: Pjdr2_5917
	Pjdr2_5917	-310	5	TGTTATTATATATAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nasD
Ortholog function: Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4)
Paenibacillus sp. JDR-2	Pjdr2_5917	-310	5	TGTTATTATATATAACA
		-249	4	TGTCAAGTATGTTGACA

Position: -47 Score: 5.1 Sequence: TGTTATCTATTCTAACA Locus tag: Pjdr2_6138
	Pjdr2_6138	-47	5.1	TGTTATCTATTCTAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Pjdr2_6138
Ortholog function: Creatininase
Paenibacillus sp. JDR-2	Pjdr2_6138	-47	5.1	TGTTATCTATTCTAACA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of TnrA regulog to Paenibacillus sp. JDR-2

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --