Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CodY regulog to Paenibacillus sp. JDR-2

Reference regulog properties
Source regulog: CodY - Bacillales
Regulator type: Transcription factor
Regulator family: CodY
Regulation mode:
Biological process: Amino acid metabolism
Effector: Guanosine triphosphate; Branched-chain amino acids
Phylum: Firmicutes
Propagated regulon:
Target genome Paenibacillus sp. JDR-2
Orthologous TF(s) Pjdr2_3461
Regulated genes 9
Built upon 445 sites [see more]
Predicted regulatory interactions in Paenibacillus sp. JDR-2
Locus tag Position Score Sequence
Position: -96
Score: 5.2
Sequence: AATTTTCAGATAATT
Locus tag: Pjdr2_0438
Pjdr2_0438 -96 5.2 AATTTTCAGATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ushA
Ortholog function: 5'-nucleotidase (EC 3.1.3.5)
Anoxybacillus flavithermus WK1 Aflv_2607 -50 4.3 AATTTTGTTATAATT
Paenibacillus sp. JDR-2 Pjdr2_0438 -96 5.2 AATTTTCAGATAATT
Position: -129
Score: 4.6
Sequence: AATATTTTAAAAATA
Locus tag: Pjdr2_0817
Pjdr2_0817 -129 4.6 AATATTTTAAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: suhB
Ortholog function: Inositol-1-monophosphatase (EC 3.1.3.25)
Paenibacillus sp. JDR-2 Pjdr2_0817 -129 4.6 AATATTTTAAAAATA
Position: -132
Score: 4.3
Sequence: AATATTCTAAAAGTT
Locus tag: Pjdr2_3375
Pjdr2_3375 -132 4.3 AATATTCTAAAAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spoVS
Ortholog function: Stage V sporulation protein required for dehydratation of the spore core and assembly of the coat (SpoVS)
Bacillus subtilis subsp. subtilis str. 168 BSU16980 -186 4.4 TATTTTATAAAAATA
Bacillus amyloliquefaciens FZB42 RBAM_016820 -186 4.4 TATTTTATAAAAATA
Anoxybacillus flavithermus WK1 Aflv_1527 -116 4.6 ATTTTTCTGAAAAAA
Bacillus cereus ATCC 14579 BC3776 -113 4.6 ATTTTTTAGAAAAAT
Position: -131
Score: 4.8
Sequence: AATTTACAAAAAATT
Locus tag: Pjdr2_3723
Pjdr2_3723 -131 4.8 AATTTACAAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Pjdr2_3723
Ortholog function: Oligopeptide/dipeptide ABC transporter, periplasmic component
Paenibacillus sp. JDR-2 Pjdr2_3723 -131 4.8 AATTTACAAAAAATT
Position: -6
Score: 4.4
Sequence: AACTTTATGAAAATT
Locus tag: Pjdr2_4798
Pjdr2_4798 -6 4.4 AACTTTATGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: metI
Ortholog function: Cystathionine gamma-synthase (EC 2.5.1.48)
Bacillus subtilis subsp. subtilis str. 168 BSU11870 -297 4.6 AATTATTAGAAATTT
-214 4.3 AACAATCAGAAAATT
Bacillus amyloliquefaciens FZB42 RBAM_011930 -314 4.6 AATTATTAGAAATTT
Bacillus pumilus SAFR-032 BPUM_1119 -297 4.4 AAAATACAGAAAATT
-287 4.1 AAATTTCAATTAATT
Bacillus licheniformis DSM 13 BLi01289 -164 4 AACAATCAGAATATT
Anoxybacillus flavithermus WK1 Aflv_2067 -228 4.4 ATTTTTCGGAAAATA
-200 4.6 AAAAATCAGAAAATT
Geobacillus kaustophilus HTA426 GK0866 -341 4.5 AAATTTAAAAAAATT
Bacillus cereus ATCC 14579 BC4253 -344 4.4 AATTTTTTAATAAAT
Paenibacillus sp. JDR-2 Pjdr2_4798 -6 4.4 AACTTTATGAAAATT
Position: -103
Score: 5.3
Sequence: AATATTCAGAAAATT
Locus tag: Pjdr2_6138
Pjdr2_6138 -103 5.3 AATATTCAGAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: crnA
Ortholog function: Creatininase (EC 3.5.2.10)
Paenibacillus sp. JDR-2 Pjdr2_6138 -199 4.7 AATTGTGTGAAAATT
-103 5.3 AATATTCAGAAAATT
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