Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CymR regulog to Paenibacillus sp. JDR-2

Reference regulog properties
Source regulog: CymR - Bacillales
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Cysteine metabolism
Effector: O-acetyl-L-serine; CysK, cysteine synthetase
Phylum: Firmicutes
Propagated regulon:
Target genome Paenibacillus sp. JDR-2
Orthologous TF(s) Pjdr2_4358
Regulated genes 9
Built upon 65 sites [see more]
Predicted regulatory interactions in Paenibacillus sp. JDR-2
Locus tag Position Score Sequence
Position: -44
Score: 5.7
Sequence: AAAAACCAACTAAATTAGTCGGAATAA
Locus tag: Pjdr2_0074
Pjdr2_0074 -44 5.7 AAAAACCAACTAAATTAGTCGGAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysK
Ortholog function: Cysteine synthase (EC 2.5.1.47)
Bacillus subtilis subsp. subtilis str. 168 BSU00730 -39 5.4 TAATACCAATACAAATAGTCGGAAATT
Bacillus amyloliquefaciens FZB42 RBAM_000840 -39 5.8 TAATACCAATAAATTTAGTCGGAAATT
Bacillus pumilus SAFR-032 BPUM_0057 -40 4.6 TtAaTaCaATaAAATTAcTcGGAgaTA
Bacillus licheniformis DSM 13 BLi00089 -38 5.6 TAATCCCAATAAAATTACTCGGAAATT
Anoxybacillus flavithermus WK1 Aflv_0065 -30 5 CAAATTCTATAAAAATACTCGGGATTA
Geobacillus kaustophilus HTA426 GK0065 -38 4.7 CAAAGTCGATAAAATTAATGGGGATTA
Bacillus cereus ATCC 14579 BC0075 -39 5.3 TAAAACCAATAAAAATACTCGGTGTTA
Bacillus halodurans C-125 BH0088 -39 5.2 GAAAACCAATAAATTTACTTGGGATTA
Bacillus clausii KSM-K16 ABC0109 -42 4.9 TAAAACCAATGAAGATACTAGGGATTG
Oceanobacillus iheyensis HTE831 OB0084 -41 6 TAAATCTTATAAAAATACTTGGAATTA
Paenibacillus sp. JDR-2 Pjdr2_0074 -44 5.7 AAAAACCAACTAAATTAGTCGGAATAA
Position: -70
Score: 5.3
Sequence: TAATTCCAACTATTCCAATAAGGAAAA
Locus tag: Pjdr2_0756
Pjdr2_0756 -70 5.3 TAATTCCAACTATTCCAATAAGGAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ssuB
Ortholog function: Aliphatic sulfonate ABC transporter (ATP-binding protein)
Bacillus subtilis subsp. subtilis str. 168 BSU08830 -167 4.6 TAAAAAAGAGTTGACATATCGGAATAA
Bacillus cereus ATCC 14579 BC2912 -174 5.7 TAAAACCTAGTTGACTTATCGGAAATA
Paenibacillus sp. JDR-2 Pjdr2_0756 -70 5.3 TAATTCCAACTATTCCAATAAGGAAAA
Position: -50
Score: 5.2
Sequence: TAAATCCGATTAAACAAATAAGTAAAG
Locus tag: Pjdr2_0760
Pjdr2_0760 -50 5.2 TAAATCCGATTAAACAAATAAGTAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ssuA
Ortholog function: Aliphatic sulfonate ABC transporter (binding lipoprotein)
Bacillus subtilis subsp. subtilis str. 168 BSU08840 -167 4.6 TAAAAAAGAGTTGACATATCGGAATAA
Bacillus cereus ATCC 14579 BC2911 -174 5.7 TAAAACCTAGTTGACTTATCGGAAATA
Paenibacillus sp. JDR-2 Pjdr2_0760 -50 5.2 TAAATCCGATTAAACAAATAAGTAAAG
Paenibacillus sp. JDR-2 Pjdr2_6186 -53 4.9 TAATTCCAAGTAAATCGGTGTGAAAAA
Position: -96
Score: 4.7
Sequence: CATAACCAACTAAACAGGTAGGAATAA
Locus tag: Pjdr2_4823
Pjdr2_4823 -96 4.7 CATAACCAACTAAACAGGTAGGAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: subI
Ortholog function: Sulfate ABC transporter (sulfate-binding protein)
Bacillus cereus ATCC 14579 BC1090 -158 5.4 AAATTCCAAGTTGACACATATGAATTA
Bacillus cereus ATCC 14579 BC1091 -158 5.4 AAATTCCAAGTTGACACATATGAATTA
Bacillus halodurans C-125 BH3127 -142 4.8 TAAAACCCACTTGACAGATGGGGATTA
-50 4.6 TAAAACAGACTTTTCCGATCTGTTTTA
Paenibacillus sp. JDR-2 Pjdr2_4823 -96 4.7 CATAACCAACTAAACAGGTAGGAATAA
Position: -105
Score: 5.2
Sequence: TAAATCCGATTAATAAGGTTGGAAAAA
Locus tag: Pjdr2_5106
Pjdr2_5106 -105 5.2 TAAATCCGATTAATAAGGTTGGAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yrrT
Ortholog function: SAM-dependent methyltransferase
Bacillus subtilis subsp. subtilis str. 168 BSU27280 -49 6.1 TAATCCATAGTATACTTATAGGAATTA
Bacillus amyloliquefaciens FZB42 RBAM_024380 -49 5.9 TAATCCATACTATACTCATAGGAATTA
Bacillus pumilus SAFR-032 BPUM_2363 -51 5.4 TAAAACATACTATACGCATAGGAATAA
Bacillus licheniformis DSM 13 BLi02856 -54 5.8 TAAATCATACTATACTTATAGGAATTG
Anoxybacillus flavithermus WK1 Aflv_0758 -36 6.4 TAATTCATACTATACTTATAGGAATTA
Geobacillus kaustophilus HTA426 GK2543 -51 5.9 AAAAACATACTATATTTATAGGAATTA
Bacillus cereus ATCC 14579 BC4369 -29 5.1 TAAAACCGATAAGAAAAAGGGGAATTT
Paenibacillus sp. JDR-2 Pjdr2_5106 -105 5.2 TAAATCCGATTAATAAGGTTGGAAAAA
Position: -55
Score: 6.1
Sequence: TAATTCTTAGTAAGTTTATAGGAATTA
Locus tag: Pjdr2_5233
Pjdr2_5233 -55 6.1 TAATTCTTAGTAAGTTTATAGGAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ytmI
Ortholog function: Putative N-acetyltransferase
Bacillus subtilis subsp. subtilis str. 168 BSU29390 -54 5.7 AAAAGCTTAGTAAACAAATAGGAATTA
Bacillus amyloliquefaciens FZB42 RBAM_030850 -54 5.3 CAAAGCTTAGTAAACAAATTGGAATTA
Paenibacillus sp. JDR-2 Pjdr2_5233 -55 6.1 TAATTCTTAGTAAGTTTATAGGAATTA
Position: -45
Score: 5.2
Sequence: AATAGCATATGAATTTACTTGGAATTA
Locus tag: Pjdr2_5647
Pjdr2_5647 -45 5.2 AATAGCATATGAATTTACTTGGAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cysH
Ortholog function: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8)
Bacillus amyloliquefaciens FZB42 RBAM_015400 -299 4.7 TTATTCCTATCAAAAAACTCGGGTTGA
Anoxybacillus flavithermus WK1 Aflv_0316 -100 5.1 AAATTCCGATAGAAAAACTAGGATTGA
Bacillus halodurans C-125 BH1486 -73 5.3 TAAATCATATCAAATTACATGGAATTA
Bacillus clausii KSM-K16 ABC0611 -265 4.9 AAATACCGAGTTTGTTAATCAGGATAA
Oceanobacillus iheyensis HTE831 OB1652 -98 5.4 CAATTCACATTGTATTACTATGAATTA
Paenibacillus sp. JDR-2 Pjdr2_5647 -45 5.2 AATAGCATATGAATTTACTTGGAATTA
Position: -148
Score: 5.1
Sequence: AATTCCCCATAGAAATAGTCGGATTTA
Locus tag: Pjdr2_6037
Pjdr2_6037 -148 5.1 AATTCCCCATAGAAATAGTCGGATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhcL
Ortholog function: Sodium-cystine symporter
Bacillus subtilis subsp. subtilis str. 168 BSU09130 -73 5.2 TAATTCGCACTTGACCCATCGGAATTA
Bacillus licheniformis DSM 13 BLi00975 -77 5.1 TAATTCCTACTTGACCAATCAGGTTTG
Bacillus cereus ATCC 14579 BC4242 -72 5.5 AATTTCATAGTTGACTTATAGGTTTTA
-39 4.8 TATATTCTATATAACAGATTGGAATTA
Bacillus clausii KSM-K16 ABC2897 -78 5.2 TAATTCCCACTTGACTCATATGATTAT
Oceanobacillus iheyensis HTE831 OB2714 -56 6.2 TAATTCGTAGTAAATTAATTGGAATTA
Paenibacillus sp. JDR-2 Pjdr2_6037 -148 5.1 AATTCCCCATAGAAATAGTCGGATTTA
-41 5 TAATTCCAATCAAACAACTTGGATTAG
Position: -53
Score: 4.9
Sequence: TAATTCCAAGTAAATCGGTGTGAAAAA
Locus tag: Pjdr2_6187
Pjdr2_6187 -53 4.9 TAATTCCAAGTAAATCGGTGTGAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ssuB
Ortholog function: Aliphatic sulfonate ABC transporter (ATP-binding protein)
Paenibacillus sp. JDR-2 Pjdr2_6187 -53 4.9 TAATTCCAAGTAAATCGGTGTGAAAAA
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