Propagation of CymR regulog to Paenibacillus sp. JDR-2
| Source regulog: | CymR - Bacillales |
| Regulator type: | Transcription factor |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor |
| Biological process: | Cysteine metabolism |
| Effector: | O-acetyl-L-serine; CysK, cysteine synthetase |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Paenibacillus sp. JDR-2 |
| Orthologous TF(s) | Pjdr2_4358 |
| Regulated genes | 9 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -44
Score: 5.7 Sequence: AAAAACCAACTAAATTAGTCGGAATAA
Locus tag: Pjdr2_0074
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| Pjdr2_0074 | -44 | 5.7 | AAAAACCAACTAAATTAGTCGGAATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cysK | ||||
| Ortholog function: Cysteine synthase (EC 2.5.1.47) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU00730 | -39 | 5.4 | TAATACCAATACAAATAGTCGGAAATT |
| Bacillus amyloliquefaciens FZB42 | RBAM_000840 | -39 | 5.8 | TAATACCAATAAATTTAGTCGGAAATT |
| Bacillus pumilus SAFR-032 | BPUM_0057 | -40 | 4.6 | TtAaTaCaATaAAATTAcTcGGAgaTA |
| Bacillus licheniformis DSM 13 | BLi00089 | -38 | 5.6 | TAATCCCAATAAAATTACTCGGAAATT |
| Anoxybacillus flavithermus WK1 | Aflv_0065 | -30 | 5 | CAAATTCTATAAAAATACTCGGGATTA |
| Geobacillus kaustophilus HTA426 | GK0065 | -38 | 4.7 | CAAAGTCGATAAAATTAATGGGGATTA |
| Bacillus cereus ATCC 14579 | BC0075 | -39 | 5.3 | TAAAACCAATAAAAATACTCGGTGTTA |
| Bacillus halodurans C-125 | BH0088 | -39 | 5.2 | GAAAACCAATAAATTTACTTGGGATTA |
| Bacillus clausii KSM-K16 | ABC0109 | -42 | 4.9 | TAAAACCAATGAAGATACTAGGGATTG |
| Oceanobacillus iheyensis HTE831 | OB0084 | -41 | 6 | TAAATCTTATAAAAATACTTGGAATTA |
| Paenibacillus sp. JDR-2 | Pjdr2_0074 | -44 | 5.7 | AAAAACCAACTAAATTAGTCGGAATAA |
|
Position: -70
Score: 5.3 Sequence: TAATTCCAACTATTCCAATAAGGAAAA
Locus tag: Pjdr2_0756
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| Pjdr2_0756 | -70 | 5.3 | TAATTCCAACTATTCCAATAAGGAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ssuB | ||||
| Ortholog function: Aliphatic sulfonate ABC transporter (ATP-binding protein) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU08830 | -167 | 4.6 | TAAAAAAGAGTTGACATATCGGAATAA |
| Bacillus cereus ATCC 14579 | BC2912 | -174 | 5.7 | TAAAACCTAGTTGACTTATCGGAAATA |
| Paenibacillus sp. JDR-2 | Pjdr2_0756 | -70 | 5.3 | TAATTCCAACTATTCCAATAAGGAAAA |
|
Position: -50
Score: 5.2 Sequence: TAAATCCGATTAAACAAATAAGTAAAG
Locus tag: Pjdr2_0760
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| Pjdr2_0760 | -50 | 5.2 | TAAATCCGATTAAACAAATAAGTAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ssuA | ||||
| Ortholog function: Aliphatic sulfonate ABC transporter (binding lipoprotein) | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU08840 | -167 | 4.6 | TAAAAAAGAGTTGACATATCGGAATAA |
| Bacillus cereus ATCC 14579 | BC2911 | -174 | 5.7 | TAAAACCTAGTTGACTTATCGGAAATA |
| Paenibacillus sp. JDR-2 | Pjdr2_0760 | -50 | 5.2 | TAAATCCGATTAAACAAATAAGTAAAG |
| Paenibacillus sp. JDR-2 | Pjdr2_6186 | -53 | 4.9 | TAATTCCAAGTAAATCGGTGTGAAAAA |
|
Position: -96
Score: 4.7 Sequence: CATAACCAACTAAACAGGTAGGAATAA
Locus tag: Pjdr2_4823
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| Pjdr2_4823 | -96 | 4.7 | CATAACCAACTAAACAGGTAGGAATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: subI | ||||
| Ortholog function: Sulfate ABC transporter (sulfate-binding protein) | ||||
| Bacillus cereus ATCC 14579 | BC1090 | -158 | 5.4 | AAATTCCAAGTTGACACATATGAATTA |
| Bacillus cereus ATCC 14579 | BC1091 | -158 | 5.4 | AAATTCCAAGTTGACACATATGAATTA |
| Bacillus halodurans C-125 | BH3127 | -142 | 4.8 | TAAAACCCACTTGACAGATGGGGATTA |
| -50 | 4.6 | TAAAACAGACTTTTCCGATCTGTTTTA | ||
| Paenibacillus sp. JDR-2 | Pjdr2_4823 | -96 | 4.7 | CATAACCAACTAAACAGGTAGGAATAA |
|
Position: -105
Score: 5.2 Sequence: TAAATCCGATTAATAAGGTTGGAAAAA
Locus tag: Pjdr2_5106
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| Pjdr2_5106 | -105 | 5.2 | TAAATCCGATTAATAAGGTTGGAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yrrT | ||||
| Ortholog function: SAM-dependent methyltransferase | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU27280 | -49 | 6.1 | TAATCCATAGTATACTTATAGGAATTA |
| Bacillus amyloliquefaciens FZB42 | RBAM_024380 | -49 | 5.9 | TAATCCATACTATACTCATAGGAATTA |
| Bacillus pumilus SAFR-032 | BPUM_2363 | -51 | 5.4 | TAAAACATACTATACGCATAGGAATAA |
| Bacillus licheniformis DSM 13 | BLi02856 | -54 | 5.8 | TAAATCATACTATACTTATAGGAATTG |
| Anoxybacillus flavithermus WK1 | Aflv_0758 | -36 | 6.4 | TAATTCATACTATACTTATAGGAATTA |
| Geobacillus kaustophilus HTA426 | GK2543 | -51 | 5.9 | AAAAACATACTATATTTATAGGAATTA |
| Bacillus cereus ATCC 14579 | BC4369 | -29 | 5.1 | TAAAACCGATAAGAAAAAGGGGAATTT |
| Paenibacillus sp. JDR-2 | Pjdr2_5106 | -105 | 5.2 | TAAATCCGATTAATAAGGTTGGAAAAA |
|
Position: -55
Score: 6.1 Sequence: TAATTCTTAGTAAGTTTATAGGAATTA
Locus tag: Pjdr2_5233
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| Pjdr2_5233 | -55 | 6.1 | TAATTCTTAGTAAGTTTATAGGAATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ytmI | ||||
| Ortholog function: Putative N-acetyltransferase | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU29390 | -54 | 5.7 | AAAAGCTTAGTAAACAAATAGGAATTA |
| Bacillus amyloliquefaciens FZB42 | RBAM_030850 | -54 | 5.3 | CAAAGCTTAGTAAACAAATTGGAATTA |
| Paenibacillus sp. JDR-2 | Pjdr2_5233 | -55 | 6.1 | TAATTCTTAGTAAGTTTATAGGAATTA |
|
Position: -45
Score: 5.2 Sequence: AATAGCATATGAATTTACTTGGAATTA
Locus tag: Pjdr2_5647
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| Pjdr2_5647 | -45 | 5.2 | AATAGCATATGAATTTACTTGGAATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cysH | ||||
| Ortholog function: Phosphoadenylyl-sulfate reductase (EC 1.8.4.8) | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_015400 | -299 | 4.7 | TTATTCCTATCAAAAAACTCGGGTTGA |
| Anoxybacillus flavithermus WK1 | Aflv_0316 | -100 | 5.1 | AAATTCCGATAGAAAAACTAGGATTGA |
| Bacillus halodurans C-125 | BH1486 | -73 | 5.3 | TAAATCATATCAAATTACATGGAATTA |
| Bacillus clausii KSM-K16 | ABC0611 | -265 | 4.9 | AAATACCGAGTTTGTTAATCAGGATAA |
| Oceanobacillus iheyensis HTE831 | OB1652 | -98 | 5.4 | CAATTCACATTGTATTACTATGAATTA |
| Paenibacillus sp. JDR-2 | Pjdr2_5647 | -45 | 5.2 | AATAGCATATGAATTTACTTGGAATTA |
|
Position: -148
Score: 5.1 Sequence: AATTCCCCATAGAAATAGTCGGATTTA
Locus tag: Pjdr2_6037
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| Pjdr2_6037 | -148 | 5.1 | AATTCCCCATAGAAATAGTCGGATTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhcL | ||||
| Ortholog function: Sodium-cystine symporter | ||||
| Bacillus subtilis subsp. subtilis str. 168 | BSU09130 | -73 | 5.2 | TAATTCGCACTTGACCCATCGGAATTA |
| Bacillus licheniformis DSM 13 | BLi00975 | -77 | 5.1 | TAATTCCTACTTGACCAATCAGGTTTG |
| Bacillus cereus ATCC 14579 | BC4242 | -72 | 5.5 | AATTTCATAGTTGACTTATAGGTTTTA |
| -39 | 4.8 | TATATTCTATATAACAGATTGGAATTA | ||
| Bacillus clausii KSM-K16 | ABC2897 | -78 | 5.2 | TAATTCCCACTTGACTCATATGATTAT |
| Oceanobacillus iheyensis HTE831 | OB2714 | -56 | 6.2 | TAATTCGTAGTAAATTAATTGGAATTA |
| Paenibacillus sp. JDR-2 | Pjdr2_6037 | -148 | 5.1 | AATTCCCCATAGAAATAGTCGGATTTA |
| -41 | 5 | TAATTCCAATCAAACAACTTGGATTAG | ||
|
Position: -53
Score: 4.9 Sequence: TAATTCCAAGTAAATCGGTGTGAAAAA
Locus tag: Pjdr2_6187
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| Pjdr2_6187 | -53 | 4.9 | TAATTCCAAGTAAATCGGTGTGAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ssuB | ||||
| Ortholog function: Aliphatic sulfonate ABC transporter (ATP-binding protein) | ||||
| Paenibacillus sp. JDR-2 | Pjdr2_6187 | -53 | 4.9 | TAATTCCAAGTAAATCGGTGTGAAAAA |