Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of YodB/CatR regulog to Paenibacillus sp. JDR-2

Reference regulog properties
Source regulog: YodB/CatR - Bacillales
Regulator type: Transcription factor
Regulator family: HxlR
Regulation mode: repressor
Biological process: Oxidative stress response
Effector: Diamide; Quinone
Phylum: Firmicutes
Propagated regulon:
Target genome Paenibacillus sp. JDR-2
Orthologous TF(s) Pjdr2_4807, Pjdr2_1364
Regulated genes 4
Built upon 42 sites [see more]
Predicted regulatory interactions in Paenibacillus sp. JDR-2
Locus tag Position Score Sequence
Position: -183
Score: 4.7
Sequence: AGTTACTATTAGTAACG
Locus tag: Pjdr2_1365
Pjdr2_1365 -183 4.7 AGTTACTATTAGTAACG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ribB
Ortholog function: GTP cyclohydrolase II( EC 3.5.4.25 )
Paenibacillus sp. JDR-2 Pjdr2_1365 -183 4.7 AGTTACTATTAGTAACG
Position: -37
Score: 5
Sequence: ATTTACAAAAAGTAACT
Locus tag: Pjdr2_2046
Pjdr2_2046 -37 5 ATTTACAAAAAGTAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: catE
Ortholog function: Catechol-2,3-dioxygenase subunit
Bacillus amyloliquefaciens FZB42 RBAM_008430 -42 5.5 GCTTACATAAAGTAAGT
Bacillus halodurans C-125 BH3305 -52 4.7 ACTTACACAAAGTAATT
Bacillus halodurans C-125 BH3305 -56 4.2 ACTTACTTACACAAAGT
-52 4.7 ACTTACACAAAGTAATT
Bacillus licheniformis DSM 13 BLi00862 -133 5.2 ACTTACACAAAGTAAGT
Bacillus pumilus SAFR-032 BPUM_3530 -127 4.3 AATTACTTGAAATAAGT
-90 4.8 AGTTACTAAAAGTAACA
Bacillus subtilis subsp. subtilis str. 168 BSU08240 -42 5.5 GCTTACATTAAGTAAGT
Oceanobacillus iheyensis HTE831 OB0442 -51 5.2 AATTACATAAAGTAAGT
Oceanobacillus iheyensis HTE831 OB0442 -51 5.2 AATTACATAAAGTAAGT
Paenibacillus sp. JDR-2 Pjdr2_2046 -37 5 ATTTACAAAAAGTAACT
Position: -134
Score: 4.2
Sequence: ACTTACTTTAGTCAAGT
Locus tag: Pjdr2_4807
Pjdr2_4807 -134 4.2 ACTTACTTTAGTCAAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yodB
Ortholog function: Transcriptional regulator of oxidative stress, HxlR family
Anoxybacillus flavithermus WK1 Aflv_1958 -78 5 ACTTACTTTTTATTAGT
-41 4.6 AGTTACAATAAGTTTGT
Bacillus amyloliquefaciens FZB42 RBAM_019300 -80 5.3 GCTTACTAAATGTAACT
Bacillus cereus ATCC 14579 BC5197 -49 4.1 ACTTACTTTTTACAAGA
Bacillus licheniformis DSM 13 BLi02274 -90 5.5 ACTTACTTTTTGTAACT
Bacillus pumilus SAFR-032 BPUM_1875 -81 5.5 ACTTACTTATTGTAACT
Bacillus subtilis subsp. subtilis str. 168 BSU19540 -80 5.3 GCTTACTAAATGTAACT
Paenibacillus sp. JDR-2 Pjdr2_4807 -134 4.2 ACTTACTTTAGTCAAGT
Position: -47
Score: 5.1
Sequence: AGTTACAAAAAGTTACT
Locus tag: Pjdr2_4953
Pjdr2_4953 -47 5.1 AGTTACAAAAAGTTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: azoR1
Ortholog function: FMN-dependent NADH-azoreductase
Bacillus licheniformis DSM 13 BLi02245 -52 5 ACATACTATTTGTAAGT
Bacillus subtilis subsp. subtilis str. 168 BSU19230 -48 5 ACATACTATTTGTAAGT
Paenibacillus sp. JDR-2 Pjdr2_4953 -47 5.1 AGTTACAAAAAGTTACT
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