Propagation of YodB/CatR regulog to Paenibacillus sp. JDR-2
| Source regulog: | YodB/CatR - Bacillales |
| Regulator type: | Transcription factor |
| Regulator family: | HxlR |
| Regulation mode: | repressor |
| Biological process: | Oxidative stress response |
| Effector: | Diamide; Quinone |
| Phylum: | Firmicutes |
| Propagated regulon: | |
| Target genome | Paenibacillus sp. JDR-2 |
| Orthologous TF(s) | Pjdr2_4807, Pjdr2_1364 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -183
Score: 4.7 Sequence: AGTTACTATTAGTAACG
Locus tag: Pjdr2_1365
|
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| Pjdr2_1365 | -183 | 4.7 | AGTTACTATTAGTAACG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ribB | ||||
| Ortholog function: GTP cyclohydrolase II( EC 3.5.4.25 ) | ||||
| Paenibacillus sp. JDR-2 | Pjdr2_1365 | -183 | 4.7 | AGTTACTATTAGTAACG |
|
Position: -37
Score: 5 Sequence: ATTTACAAAAAGTAACT
Locus tag: Pjdr2_2046
|
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| Pjdr2_2046 | -37 | 5 | ATTTACAAAAAGTAACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: catE | ||||
| Ortholog function: Catechol-2,3-dioxygenase subunit | ||||
| Bacillus amyloliquefaciens FZB42 | RBAM_008430 | -42 | 5.5 | GCTTACATAAAGTAAGT |
| Bacillus halodurans C-125 | BH3305 | -52 | 4.7 | ACTTACACAAAGTAATT |
| Bacillus halodurans C-125 | BH3305 | -56 | 4.2 | ACTTACTTACACAAAGT |
| -52 | 4.7 | ACTTACACAAAGTAATT | ||
| Bacillus licheniformis DSM 13 | BLi00862 | -133 | 5.2 | ACTTACACAAAGTAAGT |
| Bacillus pumilus SAFR-032 | BPUM_3530 | -127 | 4.3 | AATTACTTGAAATAAGT |
| -90 | 4.8 | AGTTACTAAAAGTAACA | ||
| Bacillus subtilis subsp. subtilis str. 168 | BSU08240 | -42 | 5.5 | GCTTACATTAAGTAAGT |
| Oceanobacillus iheyensis HTE831 | OB0442 | -51 | 5.2 | AATTACATAAAGTAAGT |
| Oceanobacillus iheyensis HTE831 | OB0442 | -51 | 5.2 | AATTACATAAAGTAAGT |
| Paenibacillus sp. JDR-2 | Pjdr2_2046 | -37 | 5 | ATTTACAAAAAGTAACT |
|
Position: -134
Score: 4.2 Sequence: ACTTACTTTAGTCAAGT
Locus tag: Pjdr2_4807
|
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| Pjdr2_4807 | -134 | 4.2 | ACTTACTTTAGTCAAGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yodB | ||||
| Ortholog function: Transcriptional regulator of oxidative stress, HxlR family | ||||
| Anoxybacillus flavithermus WK1 | Aflv_1958 | -78 | 5 | ACTTACTTTTTATTAGT |
| -41 | 4.6 | AGTTACAATAAGTTTGT | ||
| Bacillus amyloliquefaciens FZB42 | RBAM_019300 | -80 | 5.3 | GCTTACTAAATGTAACT |
| Bacillus cereus ATCC 14579 | BC5197 | -49 | 4.1 | ACTTACTTTTTACAAGA |
| Bacillus licheniformis DSM 13 | BLi02274 | -90 | 5.5 | ACTTACTTTTTGTAACT |
| Bacillus pumilus SAFR-032 | BPUM_1875 | -81 | 5.5 | ACTTACTTATTGTAACT |
| Bacillus subtilis subsp. subtilis str. 168 | BSU19540 | -80 | 5.3 | GCTTACTAAATGTAACT |
| Paenibacillus sp. JDR-2 | Pjdr2_4807 | -134 | 4.2 | ACTTACTTTAGTCAAGT |
|
Position: -47
Score: 5.1 Sequence: AGTTACAAAAAGTTACT
Locus tag: Pjdr2_4953
|
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| Pjdr2_4953 | -47 | 5.1 | AGTTACAAAAAGTTACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: azoR1 | ||||
| Ortholog function: FMN-dependent NADH-azoreductase | ||||
| Bacillus licheniformis DSM 13 | BLi02245 | -52 | 5 | ACATACTATTTGTAAGT |
| Bacillus subtilis subsp. subtilis str. 168 | BSU19230 | -48 | 5 | ACATACTATTTGTAAGT |
| Paenibacillus sp. JDR-2 | Pjdr2_4953 | -47 | 5.1 | AGTTACAAAAAGTTACT |