Regulog YodB/CatR - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	HxlR
Regulation mode:	repressor
Biological process:	Oxidative stress response
Effector:	Diamide; Quinone
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 42 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - HxlR
By effector - Diamide
By effector - Quinone
By pathway - Oxidative stress response

Statistics of regulated genes
Genome	Genes	Operons
Anoxybacillus flavithermus WK1	2	2
Bacillus amyloliquefaciens FZB42	5	4
Bacillus cereus ATCC 14579	7	6
Bacillus clausii KSM-K16
Bacillus halodurans C-125	5	3
Bacillus licheniformis DSM 13	8	6
Bacillus pumilus SAFR-032	6	4
Bacillus subtilis subsp. subtilis str. 168	6	5
Geobacillus kaustophilus HTA426
Oceanobacillus iheyensis HTE831	3	2
Paenibacillus sp. JDR-2	5	4

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
azoR1	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579 Gene: BC5410: FMN-dependent NADH-azoreductase	Bacillus clausii KSM-K16	Bacillus halodurans C-125 Gene: BH3860: FMN-dependent NADH-azoreductase	* Bacillus licheniformis DSM 13 Site: position = -52 score = 5.00407 sequence = ACATACTATTTGTAAGT Gene: BLi02245: FMN-dependent NADH-azoreductase	Bacillus pumilus SAFR-032	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -48 score = 5.00407 sequence = ACATACTATTTGTAAGT Gene: BSU19230: FMN-dependent NADH-azoreductase	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	* Paenibacillus sp. JDR-2 Site: position = -47 score = 5.05155 sequence = AGTTACAAAAAGTTACT Gene: Pjdr2_4953: FMN-dependent NADH-azoreductase	FMN-dependent NADH-azoreductase

CRON 2.
yodC	* Anoxybacillus flavithermus WK1 Site: position = -31 score = 4.97528 sequence = ACTAATAAAAAGTAAGT Site: position = -68 score = 4.59752 sequence = ACAAACTTATTGTAACT Gene: Aflv_1959: Putative NAD(P)H nitroreductase	* Bacillus amyloliquefaciens FZB42 Site: position = -63 score = 5.28683 sequence = AGTTACATTTAGTAAGC Gene: RBAM_019310: Putative NAD(P)H nitroreductase	* Bacillus cereus ATCC 14579 Site: position = -69 score = 5.66586 sequence = ACTTACAAAATGTAAGT Gene: BC4045: Putative NAD(P)H nitroreductase	Bacillus clausii KSM-K16	* Bacillus halodurans C-125 Site: position = -63 score = 4.37921 sequence = ACTTTACTTTTGTAAGT Gene: BH2236: Putative NAD(P)H nitroreductase	* Bacillus licheniformis DSM 13 Site: position = -73 score = 5.5081 sequence = AGTTACAAAAAGTAAGT Gene: BLi02275: Putative NAD(P)H nitroreductase	* Bacillus pumilus SAFR-032 Site: position = -75 score = 5.5081 sequence = AGTTACAATAAGTAAGT Gene: BPUM_1876: Putative NAD(P)H nitroreductase	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -66 score = 5.28683 sequence = AGTTACATTTAGTAAGC Gene: BSU19550: Putative NAD(P)H nitroreductase	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Putative NAD(P)H nitroreductase

CRON 3.
yodB	* Anoxybacillus flavithermus WK1 Site: position = -78 score = 4.97528 sequence = ACTTACTTTTTATTAGT Site: position = -41 score = 4.59752 sequence = AGTTACAATAAGTTTGT Gene: Aflv_1958: Transcriptional regulator of oxidative stress, HxlR family	* Bacillus amyloliquefaciens FZB42 Site: position = -80 score = 5.28683 sequence = GCTTACTAAATGTAACT Gene: RBAM_019300: Transcriptional regulator of oxidative stress, HxlR family	* Bacillus cereus ATCC 14579 Site: position = -49 score = 4.10719 sequence = ACTTACTTTTTACAAGA Gene: BC5197: Transcriptional regulator of oxidative stress, HxlR family	Bacillus clausii KSM-K16	Bacillus halodurans C-125 Gene: BH0508: Transcriptional regulator of oxidative stress, HxlR family	* Bacillus licheniformis DSM 13 Site: position = -90 score = 5.5081 sequence = ACTTACTTTTTGTAACT Gene: BLi02274: Transcriptional regulator of oxidative stress, HxlR family	* Bacillus pumilus SAFR-032 Site: position = -81 score = 5.5081 sequence = ACTTACTTATTGTAACT Gene: BPUM_1875: Transcriptional regulator of oxidative stress, HxlR family	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -80 score = 5.28683 sequence = GCTTACTAAATGTAACT Gene: BSU19540: Transcriptional regulator of oxidative stress, HxlR family	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	* Paenibacillus sp. JDR-2 Site: position = -134 score = 4.23697 sequence = ACTTACTTTAGTCAAGT Gene: Pjdr2_4807: Transcriptional regulator of oxidative stress, HxlR family	Transcriptional regulator of oxidative stress, HxlR family
BLi02273	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC2782: Putative oxidoreductase	Bacillus halodurans C-125 Gene: BH1510: Putative oxidoreductase	Bacillus licheniformis DSM 13 Gene: BLi02273: Putative oxidoreductase	Bacillus pumilus SAFR-032 Gene: BPUM_2349: Putative oxidoreductase	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426 Gene: GK0984: Putative oxidoreductase	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Putative oxidoreductase

CRON 4.
catE	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_008430: Catechol-2,3-dioxygenase subunit	Bacillus cereus ATCC 14579 Gene: BC3532: Catechol-2,3-dioxygenase subunit	Bacillus clausii KSM-K16 Gene: ABC0839: Catechol-2,3-dioxygenase subunit	Bacillus halodurans C-125 Gene: BH3305: Catechol-2,3-dioxygenase subunit	Bacillus licheniformis DSM 13 Gene: BLi00862: Catechol-2,3-dioxygenase subunit	* Bacillus pumilus SAFR-032 Site: position = -90 score = 4.78189 sequence = AGTTACTAAAAGTAACA Site: position = -127 score = 4.28395 sequence = AATTACTTGAAATAAGT Gene: BPUM_3530: Catechol-2,3-dioxygenase subunit	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU08240: Catechol-2,3-dioxygenase subunit	Geobacillus kaustophilus HTA426	* Oceanobacillus iheyensis HTE831 Site: position = -51 score = 5.1644 sequence = AATTACATAAAGTAAGT Gene: OB0442: Catechol-2,3-dioxygenase subunit	* Paenibacillus sp. JDR-2 Site: position = -37 score = 4.95665 sequence = ATTTACAAAAAGTAACT Gene: Pjdr2_2046: Catechol-2,3-dioxygenase subunit	Catechol-2,3-dioxygenase subunit
ribB	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	* Bacillus cereus ATCC 14579 Site: position = -82 score = 4.71519 sequence = ACTTACGTTGTGTAAGT Site: position = -202 score = 5.06943 sequence = ACTTACATAAGGTAACT Gene: BC3388: GTP cyclohydrolase II( EC 3.5.4.25 )	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032 Gene: BPUM_3531: GTP cyclohydrolase II( EC 3.5.4.25 )	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	2 Paenibacillus sp. JDR-2* Site: position = -183 score = 4.7319 sequence = AGTTACTATTAGTAACG Gene: Pjdr2_1365: GTP cyclohydrolase II( EC 3.5.4.25 ) Gene: Pjdr2_5321: GTP cyclohydrolase II( EC 3.5.4.25 )	GTP cyclohydrolase II( EC 3.5.4.25 )
ribD	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579 Gene: BC3387: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Bacillus clausii KSM-K16	Bacillus halodurans C-125	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032 Gene: BPUM_3532: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
catD	Anoxybacillus flavithermus WK1	* Bacillus amyloliquefaciens FZB42 Site: position = -42 score = 5.49459 sequence = GCTTACATAAAGTAAGT Gene: RBAM_008420: Catechol-2,3-dioxygenase membrane subunit	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	* Bacillus halodurans C-125 Site: position = -52 score = 4.6524 sequence = ACTTACACAAAGTAATT Gene: BH3304: Catechol-2,3-dioxygenase membrane subunit	* Bacillus licheniformis DSM 13 Site: position = -133 score = 5.20385 sequence = ACTTACACAAAGTAAGT Gene: BLi00861: Catechol-2,3-dioxygenase membrane subunit	Bacillus pumilus SAFR-032	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -42 score = 5.49459 sequence = GCTTACATTAAGTAAGT Gene: BSU08230: Catechol-2,3-dioxygenase membrane subunit	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Catechol-2,3-dioxygenase membrane subunit
ytkL	Anoxybacillus flavithermus WK1 Gene: Aflv_0488: Metal-dependent hydrolase	Bacillus amyloliquefaciens FZB42 Gene: RBAM_026340: Metal-dependent hydrolase	Bacillus cereus ATCC 14579 Gene: BC4613: Metal-dependent hydrolase	Bacillus clausii KSM-K16 Gene: ABC2731: Metal-dependent hydrolase	Bacillus halodurans C-125 Gene: BH3178: Metal-dependent hydrolase	Bacillus licheniformis DSM 13 Gene: BLi03080: Metal-dependent hydrolase	Bacillus pumilus SAFR-032 Gene: BPUM_2573: Metal-dependent hydrolase	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU29410: Metal-dependent hydrolase	Geobacillus kaustophilus HTA426 Gene: GK2750: Metal-dependent hydrolase	Oceanobacillus iheyensis HTE831 Gene: OB2186: Metal-dependent hydrolase	Paenibacillus sp. JDR-2 Gene: Pjdr2_2045: Metal-dependent hydrolase	Metal-dependent hydrolase

CRON 5.
spxA	Anoxybacillus flavithermus WK1 Gene: Aflv_2127: RNA polymerase-binding transcriptional regulator of oxidative stress response	* Bacillus amyloliquefaciens FZB42 Site: position = -105 score = 4.56908 sequence = ACTTACTTTTTTATAGT Gene: RBAM_011500: RNA polymerase-binding transcriptional regulator of oxidative stress response	* Bacillus cereus ATCC 14579 Site: position = -165 score = 4.71011 sequence = AGTTACTTATTAAAAGT Gene: BC1188: RNA polymerase-binding transcriptional regulator of oxidative stress response	Bacillus clausii KSM-K16 Gene: ABC2528: RNA polymerase-binding transcriptional regulator of oxidative stress response	Bacillus halodurans C-125 Gene: BH2861: RNA polymerase-binding transcriptional regulator of oxidative stress response	* Bacillus licheniformis DSM 13 Site: position = -104 score = 4.56908 sequence = ACTTACTTTTTTATAGT Gene: BLi01238: RNA polymerase-binding transcriptional regulator of oxidative stress response	* Bacillus pumilus SAFR-032 Site: position = -106 score = 4.56908 sequence = ACTTACTTTTTTATAGT Gene: BPUM_1077: RNA polymerase-binding transcriptional regulator of oxidative stress response	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -106 score = 4.56908 sequence = ACTTACTTTTTTATAGT Gene: BSU11500: RNA polymerase-binding transcriptional regulator of oxidative stress response	Geobacillus kaustophilus HTA426 Gene: GK0817: RNA polymerase-binding transcriptional regulator of oxidative stress response	Oceanobacillus iheyensis HTE831 Gene: OB1213: RNA polymerase-binding transcriptional regulator of oxidative stress response	Paenibacillus sp. JDR-2	RNA polymerase-binding transcriptional regulator of oxidative stress response

CRON 6.
azoR2	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_030720: FMN-dependent NADH-azoreductase	* Bacillus cereus ATCC 14579 Site: position = -78 score = 5.22719 sequence = ACTTACATAAGGTAAGT Gene: BC2194: FMN-dependent NADH-azoreductase	Bacillus clausii KSM-K16	Bacillus halodurans C-125 Gene: BH4043: FMN-dependent NADH-azoreductase	Bacillus licheniformis DSM 13 Gene: BLi03573: FMN-dependent NADH-azoreductase	Bacillus pumilus SAFR-032 Gene: BPUM_0385: FMN-dependent NADH-azoreductase	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU33540: FMN-dependent NADH-azoreductase	Geobacillus kaustophilus HTA426 Gene: GK3428: FMN-dependent NADH-azoreductase	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	FMN-dependent NADH-azoreductase

CRON 7.
catR	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42 Gene: RBAM_030960: Transcriptional regulator of oxidative stress response, HxlR family	* Bacillus cereus ATCC 14579 Site: position = -118 score = 5.06943 sequence = AGTTACCTTATGTAAGT Site: position = -238 score = 4.71519 sequence = ACTTACACAACGTAAGT Gene: BC3389: Transcriptional regulator of oxidative stress response, HxlR family	Bacillus clausii KSM-K16	Bacillus halodurans C-125 Gene: BH3303: Transcriptional regulator of oxidative stress response, HxlR family	* Bacillus licheniformis DSM 13 Site: position = -112 score = 5.20385 sequence = ACTTACTTTGTGTAAGT Gene: BLi00860: Transcriptional regulator of oxidative stress response, HxlR family	Bacillus pumilus SAFR-032 Gene: BPUM_3039: Transcriptional regulator of oxidative stress response, HxlR family	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU33680: Transcriptional regulator of oxidative stress response, HxlR family	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831 Gene: OB3043: Transcriptional regulator of oxidative stress response, HxlR family	Paenibacillus sp. JDR-2 Gene: Pjdr2_1364: Transcriptional regulator of oxidative stress response, HxlR family	Transcriptional regulator of oxidative stress response, HxlR family

CRON 8.
BH3304	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	* Bacillus halodurans C-125 Site: position = -56 score = 4.21363 sequence = ACTTACTTACACAAAGT Site: position = -52 score = 4.6524 sequence = ACTTACACAAAGTAATT Gene: BH3304: Putative membrane protein	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Putative membrane protein
BH3305	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16 Gene: ABC0839: Glyoxalase family protein	Bacillus halodurans C-125 Gene: BH3305: Glyoxalase family protein	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	* Oceanobacillus iheyensis HTE831 Site: position = -51 score = 5.1644 sequence = AATTACATAAAGTAAGT Gene: OB0442: Glyoxalase family protein	Paenibacillus sp. JDR-2	Glyoxalase family protein
BH0465	Anoxybacillus flavithermus WK1	Bacillus amyloliquefaciens FZB42	Bacillus cereus ATCC 14579	Bacillus clausii KSM-K16	Bacillus halodurans C-125 Gene: BH0465: Hypothetical protein	Bacillus licheniformis DSM 13	Bacillus pumilus SAFR-032	Bacillus subtilis subsp. subtilis str. 168	Geobacillus kaustophilus HTA426	Oceanobacillus iheyensis HTE831 Gene: OB0443: Hypothetical protein	Paenibacillus sp. JDR-2	Hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YodB/CatR - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --