Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Shewanella loihica PV-4

Type Regulator Effector Pathway Genes Sites
TF ArgR Arginine Arginine degradation; Arginine biosynthesis 22 36
TF AzrR Paraquat Superoxide stress response 2 2
TF BirA Biotin Biotin biosynthesis 2 2
TF CalR Utilization of aromatic compounds 1 1
TF Crp Cyclic 3',5'-AMP Carbon catabolism 176 319
TF CueR2 Copper ion, (Cu+) Copper resistance 1 1
TF Dnr Nitric oxide Denitrification 2 2
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 8 8
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 4 4
TF Fnr Oxygen Anaerobic metabolism 38 48
TF Fur Iron ion, (Fe2+) Iron homeostasis 20 22
TF GcvA Glycine Glycine metabolism 4 4
TF GlmR Glucosamine-6-phosphate Lipopolysaccharide biosynthesis 1 1
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 16 28
TF HmgQ 4-hydroxyphenylpyruvate Tyrosine degradation 2 2
TF HutC cis-Urocanic acid Histidine utilization 2 3
TF HypR Proline; 4-hydroxyproline Proline and 4-hydrohyproline utilization 8 10
TF IlvY Acetohydroxybutyrate; 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 4 6
TF LexA DNA damage SOS response 10 13
TF LiuR Branched-chain amino acid degradation 6 7
TF LldR L-lactate Lactate utilization 1 2
TF MalR Maltose Maltodextrin utilization 4 6
TF MetR Homocysteine Methionine biosynthesis 4 8
TF NagR N-acetylglucosamine N-acetylglucosamine utilization 4 4
TF NarP Nitrite; Nitrate Nitrate and nitrite respiration 16 17
TF NhaR Potassium ion Osmotic stress response 1 1
TF NorR Nitric oxide Nitrosative stress response 2 5
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 2 3
TF NsrR Nitric oxide Nitrosative stress response 3 3
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 6
TF PdhR Pyruvate Pyruvate metabolism 6 6
TF PflR Formate Formate metabolism 3 3
TF PrpR 2-methylcitrate Methylcitrate utilization 2 4
TF PsrA Oleate Fatty acid degradation 15 19
TF PUR Purine metabolism 4 4
TF SdaR Glycerate Glycerate utilization 1 1
TF SO0072 Hypothetical ABC transporter 2 2
TF SO0193 Fatty acid metabolism 1 1
TF SO1393 2 2
TF SO1415 3 3
TF SO1578 Glutathione metabolism 2 2
TF SO1703 Multidrug resistance 1 1
TF SO1758 1 1
TF SO3277 Multidrug resistance 2 2
TF SO3393 Drug resistance 2 2
TF SO4705 2 2
TF SoxR Paraquat Superoxide stress response 1 1
TF TrpR Tryptophan Aromatic amino acid metabolism 1 1
TF TyrR Tyrosine; Phenylalanine Amino acid utilization 17 25
TF ZntR Zinc ion, (Zn2+); Cadmium, ion (Cd2+) Zinc resistance; Cadmium resistance 1 1
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