Propagation of NorR regulog to Shewanella loihica PV-4
| Source regulog: | NorR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrosative stress response |
| Effector: | Nitric oxide |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella loihica PV-4 |
| Orthologous TF(s) | Shew_0656 |
| Regulated genes | 2 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -120
Score: 5.3 Sequence: AAGTGTAAAAATGACAATA
Position: -96
Score: 4.4 Sequence: TACTGTTAAATTGACATAT
Locus tag: Shew_0656
|
||||
| Shew_0656 | -120 | 5.3 | AAGTGTAAAAATGACAATA | |
| -96 | 4.4 | TACTGTTAAATTGACATAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: norR | ||||
| Ortholog function: anaerobic nitric oxide reductase transcription regulator, Fis family | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_3073 | -50 | 4.6 | CTGTGTCAATATCACAATT |
| Shewanella sp W3-18-1 | Sputw3181_0872 | -50 | 4.6 | CTGTGTCAATATCACAATT |
| Shewanella sp ANA-3 | Shewana3_0845 | -166 | 3.7 | AGGTGTCGTTTAGGCACCT |
| -58 | 4.6 | CTGTGTCAATATAACAATC | ||
| Shewanella sp MR-4 | Shewmr4_3090 | -167 | 3.7 | AGGTGTCGTTTAGGCACCT |
| -58 | 4.6 | CTGTGTCAATATAACAATC | ||
| Shewanella sp MR-7 | Shewmr7_0882 | -166 | 3.7 | AGGTGTCGTTTAGGCACCT |
| -58 | 4.6 | CTGTGTCAATATAACAATC | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3254 | -58 | 4.4 | TGTTGTTATATTCACACTT |
| -43 | 5 | ACTTGTCATAATGACATCA | ||
| Shewanella amazonensis SB2B | Sama_0727 | -76 | 5 | CCATGTCAAAATGACAATT |
| Shewanella loihica PV-4 | Shew_0656 | -120 | 5.3 | AAGTGTAAAAATGACAATA |
| -96 | 4.4 | TACTGTTAAATTGACATAT | ||
| Shewanella pealeana ATCC 700345 | Spea_3444 | -154 | 4.7 | AAGTGTAAAATTGACATTG |
| -119 | 4.1 | TACTGTTAAAAAGACACAC | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3555 | -86 | 4.3 | TACTGTAAAAAAGACAGCA |
| Shewanella piezotolerans WP3 | swp_0832 | -105 | 4.2 | AACAGTATATTTGACACTG |
| -72 | 4.9 | TAATGTCAAAAAGACAAAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_3823 | -160 | 4.1 | TTTTGTATTTATGACAGCA |
| -136 | 5.2 | AAATGTCAATATGACAAGC | ||
| Shewanella woodyi ATCC 51908 | Swoo_0760 | -62 | 5.2 | GATTGTCAAAATGACATAC |
| -37 | 4.1 | TATGGTCATATTCAAACCA | ||
|
Position: -157
Score: 4.6 Sequence: CGGTGTCATTTTTACACTT
Position: -132
Score: 5.9 Sequence: GATTGTCATTATGACAATT
Locus tag: Shew_0657
|
||||
| Shew_0657 | -157 | 4.6 | CGGTGTCATTTTTACACTT | |
| -132 | 5.9 | GATTGTCATTATGACAATT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: norB | ||||
| Ortholog function: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_3072 | -190 | 3.9 | GATTGTTTTAAAGACACAA |
| -162 | 4.9 | TAGTGTCATAAAAACAATA | ||
| -144 | 5.7 | AATTGTCATTATGACACTT | ||
| -120 | 4.1 | ACGTATCAAAAAGACACTC | ||
| Shewanella sp W3-18-1 | Sputw3181_0873 | -190 | 3.9 | GATTGTTTTAAAGACACAA |
| -162 | 4.9 | TAGTGTCATAAAAACAATA | ||
| -144 | 5.7 | AATTGTCATTATGACACTT | ||
| -120 | 4.1 | ACGTATCAAAAAGACACTC | ||
| Shewanella sp ANA-3 | Shewana3_0846 | -203 | 3.6 | CATTGTGTTATCGACATAC |
| -174 | 4.9 | AGCTGTCATAAAGACAATC | ||
| -156 | 4.5 | CACTGTCATATCAACAATC | ||
| -131 | 4.6 | CAGTATCAAAAAGACAATC | ||
| Shewanella sp MR-4 | Shewmr4_3089 | -203 | 4 | CATTGTGTTATCGACATTC |
| -174 | 4.5 | AGCTGTCACAAAGACAATA | ||
| -156 | 5.4 | AACTGTCATATCGACAATA | ||
| -131 | 4.6 | CAGTATCAAAAAGACAATT | ||
| -33 | 3.6 | ACGTATCAAAATGACGTTG | ||
| Shewanella sp MR-7 | Shewmr7_0883 | -203 | 4 | CATTGTGTTATCGACATTC |
| -174 | 5 | AGCTGTCATAAAGACAATA | ||
| -156 | 5 | AGCTGTCATATCGACAACA | ||
| -131 | 4.7 | CAGTATCAAAAAGACAATA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3253 | -181 | 4.7 | CGCTGTCATTTCGACATTA |
| -162 | 4.7 | AATAGTCTTATTGACACAT | ||
| -138 | 4.7 | ATGTGTCAATAAGACTATT | ||
| Shewanella amazonensis SB2B | Sama_0728 | -169 | 4.8 | TAGTGTCATTTATACAATT |
| -149 | 4.5 | AAATGTCTTTATGACATCA | ||
| Shewanella loihica PV-4 | Shew_0657 | -204 | 4.2 | AAGTATCAAATCGACACAG |
| -175 | 4.5 | CACTGTCTTTTTGACACGC | ||
| -157 | 4.6 | CGGTGTCATTTTTACACTT | ||
| -132 | 5.9 | GATTGTCATTATGACAATT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3554 | -186 | 4.5 | AGATGTCAATTCGACAAAG |
| -165 | 4.1 | CGTTATCAAATAGACAGCT | ||
| -142 | 5.3 | CACAGTCAAAATGACAACA | ||
| Shewanella piezotolerans WP3 | swp_0833 | -173 | 5.2 | CATTGTCAAAAAGACACTT |
| -155 | 4.8 | TAGTGTCATATGGACACAC | ||
| -131 | 5.1 | CATTGTCTTTATGACAACC | ||
| Shewanella sediminis HAW-EB3 | Ssed_3822 | -171 | 4.9 | AAGTGTAAAAATGACACTG |
| -153 | 4.3 | GGCTGTTATTAAGACACTA | ||
| -129 | 4.5 | GGGTGTCCTAATGACACAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0761 | -199 | 4 | ATCAGTCATATTGATATTC |
| -172 | 4.9 | AGCTGTCATTTAGACACTA | ||
| -154 | 5.1 | AACTGTCATTTTTACAATA | ||
| -130 | 5 | CATAGTCATAATGACACAT | ||