Regulog NorR - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrosative stress response |
| Effector: | Nitric oxide |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NorR
- By TF family - Fis
- By effector - Nitric oxide
- By pathway - Nitrosative stress response
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | ||
| Shewanella putrefaciens CN-32 | 2 | 2 |
| Shewanella sp W3-18-1 | 2 | 2 |
| Shewanella sp ANA-3 | 2 | 2 |
| Shewanella sp MR-4 | 2 | 2 |
| Shewanella sp MR-7 | 2 | 2 |
| Shewanella baltica OS155 | ||
| Shewanella denitrificans OS217 | ||
| Shewanella frigidimarina NCIMB 400 | 4 | 3 |
| Shewanella amazonensis SB2B | 2 | 2 |
| Shewanella loihica PV-4 | 2 | 2 |
| Shewanella pealeana ATCC 700345 | 3 | 2 |
| Shewanella halifaxensis HAW-EB4 | 4 | 3 |
| Shewanella piezotolerans WP3 | 8 | 5 |
| Shewanella sediminis HAW-EB3 | 4 | 3 |
| Shewanella woodyi ATCC 51908 | 5 | 4 |
| Genes | Function | ||||||||||||||||
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| CRON 1. | |||||||||||||||||
| swp_4283 |
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Shewanella piezotolerans WP3 Site: position = -131 score = 5.0821 sequence = CGTAGTCATTATGACTACA Site: position = -156 score = 4.84049 sequence = ATGAGTCATAATGACTACA Gene: swp_4283: hypothetical protein |
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hypothetical protein |
| nnrS2 |
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Gene: swp_4284: NnrS protein involved in response to NO |
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Shewanella woodyi ATCC 51908 Site: position = -525 score = 5.46292 sequence = TAGAGTCAATATGACTACA Site: position = -499 score = 4.9493 sequence = TGTAGTCATATTGACTCAC Gene: Swoo_0686: NnrS protein involved in response to NO |
NnrS protein involved in response to NO |
| hmp2 |
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Gene: swp_4285: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
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Gene: Swoo_0685: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) |
| CRON 2. | |||||||||||||||||
| norR |
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Shewanella putrefaciens CN-32 Site: position = -50 score = 4.59571 sequence = CTGTGTCAATATCACAATT Gene: Sputcn32_3073: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Shewanella sp W3-18-1 Site: position = -50 score = 4.59571 sequence = CTGTGTCAATATCACAATT Gene: Sputw3181_0872: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Shewanella sp ANA-3 Site: position = -166 score = 3.72087 sequence = AGGTGTCGTTTAGGCACCT Site: position = -58 score = 4.63253 sequence = CTGTGTCAATATAACAATC Gene: Shewana3_0845: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Shewanella sp MR-4 Site: position = -167 score = 3.72087 sequence = AGGTGTCGTTTAGGCACCT Site: position = -58 score = 4.63253 sequence = CTGTGTCAATATAACAATC Gene: Shewmr4_3090: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Shewanella sp MR-7 Site: position = -58 score = 4.63253 sequence = CTGTGTCAATATAACAATC Site: position = -166 score = 3.72087 sequence = AGGTGTCGTTTAGGCACCT Gene: Shewmr7_0882: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Shewanella frigidimarina NCIMB 400 Site: position = -58 score = 4.38444 sequence = TGTTGTTATATTCACACTT Site: position = -43 score = 4.96936 sequence = ACTTGTCATAATGACATCA Gene: Sfri_3254: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Shewanella amazonensis SB2B Site: position = -76 score = 5.01437 sequence = CCATGTCAAAATGACAATT Gene: Sama_0727: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Shewanella loihica PV-4 Site: position = -120 score = 5.25223 sequence = AAGTGTAAAAATGACAATA Site: position = -96 score = 4.3845 sequence = TACTGTTAAATTGACATAT Gene: Shew_0656: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Shewanella pealeana ATCC 700345 Site: position = -154 score = 4.69552 sequence = AAGTGTAAAATTGACATTG Site: position = -119 score = 4.13362 sequence = TACTGTTAAAAAGACACAC Gene: Spea_3444: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Shewanella halifaxensis HAW-EB4 Site: position = -86 score = 4.28713 sequence = TACTGTAAAAAAGACAGCA Gene: Shal_3555: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Shewanella piezotolerans WP3 Site: position = -105 score = 4.15652 sequence = AACAGTATATTTGACACTG Site: position = -72 score = 4.94906 sequence = TAATGTCAAAAAGACAAAA Gene: swp_0832: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Shewanella sediminis HAW-EB3 Site: position = -136 score = 5.15727 sequence = AAATGTCAATATGACAAGC Site: position = -160 score = 4.0983 sequence = TTTTGTATTTATGACAGCA Gene: Ssed_3823: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Shewanella woodyi ATCC 51908 Site: position = -62 score = 5.19409 sequence = GATTGTCAAAATGACATAC Site: position = -37 score = 4.11024 sequence = TATGGTCATATTCAAACCA Gene: Swoo_0760: anaerobic nitric oxide reductase transcription regulator, Fis family |
anaerobic nitric oxide reductase transcription regulator, Fis family |
| CRON 3. | |||||||||||||||||
| norR2 |
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Shewanella piezotolerans WP3 Site: position = -118 score = 5.0821 sequence = TGTAGTCATAATGACTACG Site: position = -93 score = 4.84049 sequence = TGTAGTCATTATGACTCAT Gene: swp_4282: anaerobic nitric oxide reductase transcription regulator, Fis family |
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Shewanella woodyi ATCC 51908 Site: position = -118 score = 4.9493 sequence = GTGAGTCAATATGACTACA Site: position = -92 score = 5.46292 sequence = TGTAGTCATATTGACTCTA Gene: Swoo_0688: anaerobic nitric oxide reductase transcription regulator, Fis family |
anaerobic nitric oxide reductase transcription regulator, Fis family |
| CRON 4. | |||||||||||||||||
| norV |
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Shewanella frigidimarina NCIMB 400 Site: position = -195 score = 4.84132 sequence = CAAAGTCATAATGACACCC Site: position = -176 score = 4.35117 sequence = GATAGTCATAAAGACATAG Site: position = -152 score = 4.86172 sequence = AATTGTTATAATGACACCC Gene: Sfri_1583: Anaerobic nitric oxide reductase flavorubredoxin |
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Shewanella pealeana ATCC 700345 Site: position = -145 score = 3.79873 sequence = CGCTATCAAAAAGACAGTG Site: position = -169 score = 4.25024 sequence = ATATGTCACTTTGACATTT Site: position = -188 score = 4.58715 sequence = AGGTGTCTTATTGACAGCT Site: position = -237 score = 3.98633 sequence = TATAGTCGTTTGGTCACTG Gene: Spea_3652: Anaerobic nitric oxide reductase flavorubredoxin |
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Shewanella halifaxensis HAW-EB4 Site: position = -144 score = 3.95391 sequence = TGCTATCAAAAAGACATTG Site: position = -188 score = 4.75448 sequence = GACTGTCTTAATGACATTT Site: position = -168 score = 4.87172 sequence = TACGGTCATTTTGACTGTT Gene: Shal_3740: Anaerobic nitric oxide reductase flavorubredoxin |
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Shewanella piezotolerans WP3 Site: position = -138 score = 5.1156 sequence = TGTTGTCATTATTACAATT Site: position = -162 score = 4.47872 sequence = GAGTGTCTTTATGATACTT Site: position = -182 score = 4.16177 sequence = GGGTGTCTTAATGACATAG Site: position = -207 score = 4.02788 sequence = CTTTGTCATAAAGACTCGG Gene: swp_1079: Anaerobic nitric oxide reductase flavorubredoxin |
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Shewanella sediminis HAW-EB3 Site: position = -133 score = 4.03593 sequence = GCATGTCTTTATGACATCT Site: position = -157 score = 4.06276 sequence = CAATGTCTTTTGGACAGTT Site: position = -176 score = 4.63496 sequence = TAGTGTTGATATGACACTG Site: position = -213 score = 4.06163 sequence = TCCTGTTATTAAGACACTC Gene: Ssed_4053: Anaerobic nitric oxide reductase flavorubredoxin |
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Anaerobic nitric oxide reductase flavorubredoxin |
| norW |
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Gene: Sfri_1582: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
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Gene: Spea_3651: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
Gene: Shal_3739: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
Gene: swp_1080: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
Gene: Ssed_4052: Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
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Nitric oxide reductase FlRd-NAD(+) reductase (EC 1.18.1.-) |
| CRON 5. | |||||||||||||||||
| norB |
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Shewanella putrefaciens CN-32 Site: position = -120 score = 4.1384 sequence = ACGTATCAAAAAGACACTC Site: position = -144 score = 5.6927 sequence = AATTGTCATTATGACACTT Site: position = -162 score = 4.87073 sequence = TAGTGTCATAAAAACAATA Site: position = -190 score = 3.90948 sequence = GATTGTTTTAAAGACACAA Gene: Sputcn32_3072: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
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Shewanella sp W3-18-1 Site: position = -120 score = 4.1384 sequence = ACGTATCAAAAAGACACTC Site: position = -144 score = 5.6927 sequence = AATTGTCATTATGACACTT Site: position = -190 score = 3.90948 sequence = GATTGTTTTAAAGACACAA Site: position = -162 score = 4.87073 sequence = TAGTGTCATAAAAACAATA Gene: Sputw3181_0873: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
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Shewanella sp ANA-3 Site: position = -131 score = 4.59722 sequence = CAGTATCAAAAAGACAATC Site: position = -156 score = 4.54334 sequence = CACTGTCATATCAACAATC Site: position = -174 score = 4.92177 sequence = AGCTGTCATAAAGACAATC Site: position = -203 score = 3.59437 sequence = CATTGTGTTATCGACATAC Gene: Shewana3_0846: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
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Shewanella sp MR-4 Site: position = -156 score = 5.40131 sequence = AACTGTCATATCGACAATA Site: position = -131 score = 4.5604 sequence = CAGTATCAAAAAGACAATT Site: position = -174 score = 4.53737 sequence = AGCTGTCACAAAGACAATA Site: position = -203 score = 4.00669 sequence = CATTGTGTTATCGACATTC Site: position = -33 score = 3.6257 sequence = ACGTATCAAAATGACGTTG Gene: Shewmr4_3089: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
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Shewanella sp MR-7 Site: position = -203 score = 4.00669 sequence = CATTGTGTTATCGACATTC Site: position = -174 score = 5.02308 sequence = AGCTGTCATAAAGACAATA Site: position = -156 score = 4.96688 sequence = AGCTGTCATATCGACAACA Site: position = -131 score = 4.69852 sequence = CAGTATCAAAAAGACAATA Gene: Shewmr7_0883: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
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Shewanella frigidimarina NCIMB 400 Site: position = -138 score = 4.72435 sequence = ATGTGTCAATAAGACTATT Site: position = -162 score = 4.72435 sequence = AATAGTCTTATTGACACAT Site: position = -181 score = 4.69351 sequence = CGCTGTCATTTCGACATTA Gene: Sfri_3253: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
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Shewanella amazonensis SB2B Site: position = -169 score = 4.8046 sequence = TAGTGTCATTTATACAATT Site: position = -149 score = 4.54955 sequence = AAATGTCTTTATGACATCA Gene: Sama_0728: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
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Shewanella loihica PV-4 Site: position = -132 score = 5.88209 sequence = GATTGTCATTATGACAATT Site: position = -157 score = 4.63823 sequence = CGGTGTCATTTTTACACTT Site: position = -175 score = 4.54 sequence = CACTGTCTTTTTGACACGC Site: position = -204 score = 4.15652 sequence = AAGTATCAAATCGACACAG Gene: Shew_0657: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
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Shewanella halifaxensis HAW-EB4 Site: position = -165 score = 4.05507 sequence = CGTTATCAAATAGACAGCT Site: position = -186 score = 4.51054 sequence = AGATGTCAATTCGACAAAG Site: position = -142 score = 5.25622 sequence = CACAGTCAAAATGACAACA Gene: Shal_3554: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
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Shewanella piezotolerans WP3 Site: position = -173 score = 5.21098 sequence = CATTGTCAAAAAGACACTT Site: position = -155 score = 4.75391 sequence = TAGTGTCATATGGACACAC Site: position = -131 score = 5.11117 sequence = CATTGTCTTTATGACAACC Gene: swp_0833: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
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Shewanella sediminis HAW-EB3 Site: position = -129 score = 4.4647 sequence = GGGTGTCCTAATGACACAA Site: position = -171 score = 4.85545 sequence = AAGTGTAAAAATGACACTG Site: position = -153 score = 4.25673 sequence = GGCTGTTATTAAGACACTA Gene: Ssed_3822: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
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Shewanella woodyi ATCC 51908 Site: position = -130 score = 4.9939 sequence = CATAGTCATAATGACACAT Site: position = -154 score = 5.10933 sequence = AACTGTCATTTTTACAATA Site: position = -172 score = 4.94249 sequence = AGCTGTCATTTAGACACTA Site: position = -199 score = 4.03081 sequence = ATCAGTCATATTGATATTC Gene: Swoo_0761: Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
Nitric-oxide reductase (EC 1.7.99.7), quinol-dependent |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |