Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NhaR regulog to Shewanella loihica PV-4

Reference regulog properties
Source regulog: NhaR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator
Biological process: Osmotic stress response
Effector: Potassium ion
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella loihica PV-4
Orthologous TF(s) Shew_1044
Regulated genes 1
Built upon 33 sites [see more]
Predicted regulatory interactions in Shewanella loihica PV-4
Locus tag Position Score Sequence
Position: -97
Score: 5.6
Sequence: CCTCGGAATTACCGATG
Locus tag: Shew_1042
Shew_1042 -97 5.6 CCTCGGAATTACCGATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nhaA
Ortholog function: Na+/H+ antiporter NhaA
Shewanella oneidensis MR-1 SO_1336 -97 5.6 CCTCGGAATAGCCGAGG
Shewanella putrefaciens CN-32 Sputcn32_1147 -96 5.6 CCTCGGAATAGCCGAGG
Shewanella sp W3-18-1 Sputw3181_3017 -96 5.6 CCTCGGAATAGCCGAGG
Shewanella sp ANA-3 Shewana3_3038 -97 6 CCTCGGAATTATCGAGG
Shewanella sp MR-4 Shewmr4_2860 -96 5.7 CCTCGGAATTAACGAGG
Shewanella sp MR-7 Shewmr7_2942 -96 5.7 CCTCGGAATTAACGAGG
Shewanella baltica OS155 Sbal_1189 -96 5.8 CCTCGGAATAACCGAGG
Shewanella denitrificans OS217 Sden_2778 -93 4.4 TATCGGTATTATCGATA
Shewanella frigidimarina NCIMB 400 Sfri_2941 -94 5 CCTCGGTTAAACCGAGT
Shewanella amazonensis SB2B Sama_0868 -98 5.9 CCTCGGAAATTTCGAGG
Shewanella loihica PV-4 Shew_1042 -97 5.6 CCTCGGAATTACCGATG
Shewanella pealeana ATCC 700345 Spea_1025 -292 4.7 GCTCGTTATTTTCGATG
-97 4.6 CTTCGGATATTCCGACG
Shewanella halifaxensis HAW-EB4 Shal_1071 -292 4.7 CTTCGATTTTTTCGAGT
-97 4.6 CTTCGGATATCCCGATG
Shewanella piezotolerans WP3 swp_3792 -174 5.3 CCTCGGATATTCCGATG
Shewanella sediminis HAW-EB3 Ssed_1136 -96 5.5 CCTCGGGAATACCGATG
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