Regulog NhaR - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:	activator
Biological process:	Osmotic stress response
Effector:	Potassium ion
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 33 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - LysR
By effector - Potassium ion
By pathway - Osmotic stress response

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1	8	2
Shewanella putrefaciens CN-32	8	2
Shewanella sp W3-18-1	8	2
Shewanella sp ANA-3	9	3
Shewanella sp MR-4	9	3
Shewanella sp MR-7	9	3
Shewanella baltica OS155	8	2
Shewanella denitrificans OS217	3	1
Shewanella frigidimarina NCIMB 400	8	2
Shewanella amazonensis SB2B	3	1
Shewanella loihica PV-4	3	1
Shewanella pealeana ATCC 700345	8	2
Shewanella halifaxensis HAW-EB4	8	2
Shewanella piezotolerans WP3	8	2
Shewanella sediminis HAW-EB3	8	2
Shewanella woodyi ATCC 51908	5	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
nhaA	* Shewanella oneidensis MR-1 Site: position = -97 score = 5.55796 sequence = CCTCGGAATAGCCGAGG Gene: SO_1336: Na+/H+ antiporter NhaA	* Shewanella putrefaciens CN-32 Site: position = -96 score = 5.55796 sequence = CCTCGGAATAGCCGAGG Gene: Sputcn32_1147: Na+/H+ antiporter NhaA	* Shewanella sp W3-18-1 Site: position = -96 score = 5.55796 sequence = CCTCGGAATAGCCGAGG Gene: Sputw3181_3017: Na+/H+ antiporter NhaA	* Shewanella sp ANA-3 Site: position = -97 score = 6.0169 sequence = CCTCGGAATTATCGAGG Gene: Shewana3_3038: Na+/H+ antiporter NhaA	* Shewanella sp MR-4 Site: position = -96 score = 5.74843 sequence = CCTCGGAATTAACGAGG Gene: Shewmr4_2860: Na+/H+ antiporter NhaA	* Shewanella sp MR-7 Site: position = -96 score = 5.74843 sequence = CCTCGGAATTAACGAGG Gene: Shewmr7_2942: Na+/H+ antiporter NhaA	* Shewanella baltica OS155 Site: position = -96 score = 5.76554 sequence = CCTCGGAATAACCGAGG Gene: Sbal_1189: Na+/H+ antiporter NhaA	* Shewanella denitrificans OS217 Site: position = -93 score = 4.3504 sequence = TATCGGTATTATCGATA Gene: Sden_2778: Na+/H+ antiporter NhaA	* Shewanella frigidimarina NCIMB 400 Site: position = -94 score = 5.02399 sequence = CCTCGGTTAAACCGAGT Gene: Sfri_2941: Na+/H+ antiporter NhaA	* Shewanella amazonensis SB2B Site: position = -98 score = 5.94744 sequence = CCTCGGAAATTTCGAGG Gene: Sama_0868: Na+/H+ antiporter NhaA	* Shewanella loihica PV-4 Site: position = -97 score = 5.63548 sequence = CCTCGGAATTACCGATG Gene: Shew_1042: Na+/H+ antiporter NhaA	* Shewanella pealeana ATCC 700345 Site: position = -97 score = 4.60242 sequence = CTTCGGATATTCCGACG Site: position = -292 score = 4.68308 sequence = GCTCGTTATTTTCGATG Gene: Spea_1025: Na+/H+ antiporter NhaA	* Shewanella halifaxensis HAW-EB4 Site: position = -97 score = 4.6018 sequence = CTTCGGATATCCCGATG Site: position = -292 score = 4.65907 sequence = CTTCGATTTTTTCGAGT Gene: Shal_1071: Na+/H+ antiporter NhaA	* Shewanella piezotolerans WP3 Site: position = -174 score = 5.31465 sequence = CCTCGGATATTCCGATG Gene: swp_3792: Na+/H+ antiporter NhaA	* Shewanella sediminis HAW-EB3 Site: position = -96 score = 5.46945 sequence = CCTCGGGAATACCGATG Gene: Ssed_1136: Na+/H+ antiporter NhaA	Shewanella woodyi ATCC 51908	Na+/H+ antiporter NhaA
SO1337	Shewanella oneidensis MR-1 Gene: SO_1337: hypothetical protein	Shewanella putrefaciens CN-32 Gene: Sputcn32_1148: hypothetical protein	Shewanella sp W3-18-1 Gene: Sputw3181_3016: hypothetical protein	Shewanella sp ANA-3 Gene: Shewana3_3037: hypothetical protein	Shewanella sp MR-4 Gene: Shewmr4_2859: hypothetical protein	Shewanella sp MR-7 Gene: Shewmr7_2941: hypothetical protein	Shewanella baltica OS155 Gene: Sbal_1190: hypothetical protein	Shewanella denitrificans OS217 Gene: Sden_2777: hypothetical protein	Shewanella frigidimarina NCIMB 400 Gene: Sfri_2940: hypothetical protein	Shewanella amazonensis SB2B Gene: Sama_0869: hypothetical protein	Shewanella loihica PV-4 Gene: Shew_1043: hypothetical protein	Shewanella pealeana ATCC 700345 Gene: Spea_1026: hypothetical protein	Shewanella halifaxensis HAW-EB4 Gene: Shal_1072: hypothetical protein	Shewanella piezotolerans WP3 Gene: swp_3791: hypothetical protein	Shewanella sediminis HAW-EB3 Gene: Ssed_1137: hypothetical protein	Shewanella woodyi ATCC 51908 Gene: Swoo_1232: hypothetical protein	hypothetical protein
nhaR	Shewanella oneidensis MR-1 Gene: SO_1338: Transcriptional activator of sodium-proton antiporter, LysR family	Shewanella putrefaciens CN-32 Gene: Sputcn32_1149: Transcriptional activator of sodium-proton antiporter, LysR family	Shewanella sp W3-18-1 Gene: Sputw3181_3015: Transcriptional activator of sodium-proton antiporter, LysR family	Shewanella sp ANA-3 Gene: Shewana3_3036: Transcriptional activator of sodium-proton antiporter, LysR family	Shewanella sp MR-4 Gene: Shewmr4_2858: Transcriptional activator of sodium-proton antiporter, LysR family	Shewanella sp MR-7 Gene: Shewmr7_2940: Transcriptional activator of sodium-proton antiporter, LysR family	Shewanella baltica OS155 Gene: Sbal_1191: Transcriptional activator of sodium-proton antiporter, LysR family	Shewanella denitrificans OS217 Gene: Sden_2776: Transcriptional activator of sodium-proton antiporter, LysR family	Shewanella frigidimarina NCIMB 400 Gene: Sfri_2939: Transcriptional activator of sodium-proton antiporter, LysR family	Shewanella amazonensis SB2B Gene: Sama_0870: Transcriptional activator of sodium-proton antiporter, LysR family	Shewanella loihica PV-4 Gene: Shew_1044: Transcriptional activator of sodium-proton antiporter, LysR family	Shewanella pealeana ATCC 700345 Gene: Spea_1027: Transcriptional activator of sodium-proton antiporter, LysR family	Shewanella halifaxensis HAW-EB4 Gene: Shal_1073: Transcriptional activator of sodium-proton antiporter, LysR family	Shewanella piezotolerans WP3 Gene: swp_3790: Transcriptional activator of sodium-proton antiporter, LysR family	Shewanella sediminis HAW-EB3 Gene: Ssed_1138: Transcriptional activator of sodium-proton antiporter, LysR family	Shewanella woodyi ATCC 51908 Gene: Swoo_1233: Transcriptional activator of sodium-proton antiporter, LysR family	Transcriptional activator of sodium-proton antiporter, LysR family

CRON 2.
otr	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	* Shewanella sp ANA-3 Site: position = -30 score = 5.51799 sequence = CCTCGGTACTGCCGAGG Gene: Shewana3_3690: Octaheme tetrathionate reductase	* Shewanella sp MR-4 Site: position = -30 score = 5.87879 sequence = CCTCGGTATTGCCGAGG Gene: Shewmr4_3513: Octaheme tetrathionate reductase	* Shewanella sp MR-7 Site: position = -30 score = 5.62742 sequence = CCTCGGTATCGCCGAGG Gene: Shewmr7_0439: Octaheme tetrathionate reductase	Shewanella baltica OS155	Shewanella denitrificans OS217	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Octaheme tetrathionate reductase

CRON 3.
ccoH	* Shewanella oneidensis MR-1 Site: position = -88 score = 5.59951 sequence = CCTCGATAACCTCGAGG Gene: SO_2360: Cbb3-type cytochrome oxidase assembly protein	* Shewanella putrefaciens CN-32 Site: position = -86 score = 5.49008 sequence = CCTCGAGAGTATCGAGG Gene: Sputcn32_1955: Cbb3-type cytochrome oxidase assembly protein	* Shewanella sp W3-18-1 Site: position = -86 score = 5.49008 sequence = CCTCGAGAGTATCGAGG Gene: Sputw3181_2050: Cbb3-type cytochrome oxidase assembly protein	* Shewanella sp ANA-3 Site: position = -88 score = 5.62742 sequence = CCTCGATAACGTCGAGG Gene: Shewana3_2111: Cbb3-type cytochrome oxidase assembly protein	* Shewanella sp MR-4 Site: position = -88 score = 5.62742 sequence = CCTCGATAACGTCGAGG Gene: Shewmr4_2010: Cbb3-type cytochrome oxidase assembly protein	* Shewanella sp MR-7 Site: position = -88 score = 5.62742 sequence = CCTCGATAACGTCGAGG Gene: Shewmr7_1965: Cbb3-type cytochrome oxidase assembly protein	* Shewanella baltica OS155 Site: position = -88 score = 5.44471 sequence = CCTCGAAGACTTCGAGG Gene: Sbal_2205: Cbb3-type cytochrome oxidase assembly protein	Shewanella denitrificans OS217 Gene: Sden_1847: Cbb3-type cytochrome oxidase assembly protein	* Shewanella frigidimarina NCIMB 400 Site: position = -94 score = 5.85088 sequence = CCTCGAGATTATCGAGG Gene: Sfri_2014: Cbb3-type cytochrome oxidase assembly protein	Shewanella amazonensis SB2B Gene: Sama_1795: Cbb3-type cytochrome oxidase assembly protein	Shewanella loihica PV-4 Gene: Shew_1989: Cbb3-type cytochrome oxidase assembly protein	* Shewanella pealeana ATCC 700345 Site: position = -115 score = 5.29804 sequence = CCTCGTTAACAACGAGG Gene: Spea_2218: Cbb3-type cytochrome oxidase assembly protein	* Shewanella halifaxensis HAW-EB4 Site: position = -114 score = 5.34183 sequence = CCTCGTCATTAACGAGG Gene: Shal_2201: Cbb3-type cytochrome oxidase assembly protein	* Shewanella piezotolerans WP3 Site: position = -103 score = 4.91157 sequence = CCTCGTCACTTACGAGG Gene: swp_2576: Cbb3-type cytochrome oxidase assembly protein	* Shewanella sediminis HAW-EB3 Site: position = -88 score = 5.58451 sequence = CCTCGATCTTATCGAGG Gene: Ssed_2215: Cbb3-type cytochrome oxidase assembly protein	* Shewanella woodyi ATCC 51908 Site: position = -88 score = 5.22371 sequence = CCTCGATCGTATCGAGG Gene: Swoo_2421: Cbb3-type cytochrome oxidase assembly protein	Cbb3-type cytochrome oxidase assembly protein
ccoI	Shewanella oneidensis MR-1 Gene: SO_2359: Cbb3-type cytochrome oxidase, copper translocating P-ATPase	Shewanella putrefaciens CN-32 Gene: Sputcn32_1954: Cbb3-type cytochrome oxidase, copper translocating P-ATPase	Shewanella sp W3-18-1 Gene: Sputw3181_2051: Cbb3-type cytochrome oxidase, copper translocating P-ATPase	Shewanella sp ANA-3 Gene: Shewana3_2112: Cbb3-type cytochrome oxidase, copper translocating P-ATPase	Shewanella sp MR-4 Gene: Shewmr4_2011: Cbb3-type cytochrome oxidase, copper translocating P-ATPase	Shewanella sp MR-7 Gene: Shewmr7_1964: Cbb3-type cytochrome oxidase, copper translocating P-ATPase	Shewanella baltica OS155 Gene: Sbal_2206: Cbb3-type cytochrome oxidase, copper translocating P-ATPase	Shewanella denitrificans OS217 Gene: Sden_1846: Cbb3-type cytochrome oxidase, copper translocating P-ATPase	Shewanella frigidimarina NCIMB 400 Gene: Sfri_2015: Cbb3-type cytochrome oxidase, copper translocating P-ATPase	Shewanella amazonensis SB2B Gene: Sama_1796: Cbb3-type cytochrome oxidase, copper translocating P-ATPase	Shewanella loihica PV-4 Gene: Shew_1990: Cbb3-type cytochrome oxidase, copper translocating P-ATPase	Shewanella pealeana ATCC 700345 Gene: Spea_2219: Cbb3-type cytochrome oxidase, copper translocating P-ATPase	Shewanella halifaxensis HAW-EB4 Gene: Shal_2202: Cbb3-type cytochrome oxidase, copper translocating P-ATPase	Shewanella piezotolerans WP3 Gene: swp_2577: Cbb3-type cytochrome oxidase, copper translocating P-ATPase	Shewanella sediminis HAW-EB3 Gene: Ssed_2216: Cbb3-type cytochrome oxidase, copper translocating P-ATPase	Shewanella woodyi ATCC 51908 Gene: Swoo_2420: Cbb3-type cytochrome oxidase, copper translocating P-ATPase	Cbb3-type cytochrome oxidase, copper translocating P-ATPase
ccoS	Shewanella oneidensis MR-1 Gene: SO_2358: Cbb3-type cytochrome oxidase assembly protein	Shewanella putrefaciens CN-32 Gene: Sputcn32_1953: Cbb3-type cytochrome oxidase assembly protein	Shewanella sp W3-18-1 Gene: Sputw3181_2052: Cbb3-type cytochrome oxidase assembly protein	Shewanella sp ANA-3 Gene: Shewana3_2113: Cbb3-type cytochrome oxidase assembly protein	Shewanella sp MR-4 Gene: Shewmr4_2012: Cbb3-type cytochrome oxidase assembly protein	Shewanella sp MR-7 Gene: Shewmr7_1963: Cbb3-type cytochrome oxidase assembly protein	Shewanella baltica OS155 Gene: Sbal_2207: Cbb3-type cytochrome oxidase assembly protein	Shewanella denitrificans OS217 Gene: Sden_1845: Cbb3-type cytochrome oxidase assembly protein	Shewanella frigidimarina NCIMB 400 Gene: Sfri_2016: Cbb3-type cytochrome oxidase assembly protein	Shewanella amazonensis SB2B Gene: Sama_1797: Cbb3-type cytochrome oxidase assembly protein	Shewanella loihica PV-4 Gene: Shew_1991: Cbb3-type cytochrome oxidase assembly protein	Shewanella pealeana ATCC 700345 Gene: Spea_2220: Cbb3-type cytochrome oxidase assembly protein	Shewanella halifaxensis HAW-EB4 Gene: Shal_2203: Cbb3-type cytochrome oxidase assembly protein	Shewanella piezotolerans WP3 Gene: swp_2578: Cbb3-type cytochrome oxidase assembly protein	Shewanella sediminis HAW-EB3 Gene: Ssed_2217: Cbb3-type cytochrome oxidase assembly protein	Shewanella woodyi ATCC 51908 Gene: Swoo_2419: Cbb3-type cytochrome oxidase assembly protein	Cbb3-type cytochrome oxidase assembly protein
SO2357	Shewanella oneidensis MR-1 Gene: SO_2357: Integral membrane protein	Shewanella putrefaciens CN-32 Gene: Sputcn32_1952: Integral membrane protein	Shewanella sp W3-18-1 Gene: Sputw3181_2053: Integral membrane protein	Shewanella sp ANA-3 Gene: Shewana3_2114: Integral membrane protein	Shewanella sp MR-4 Gene: Shewmr4_2013: Integral membrane protein	Shewanella sp MR-7 Gene: Shewmr7_1962: Integral membrane protein	Shewanella baltica OS155 Gene: Sbal_2208: Integral membrane protein	Shewanella denitrificans OS217 Gene: Sden_1844: Integral membrane protein	Shewanella frigidimarina NCIMB 400 Gene: Sfri_2017: Integral membrane protein	Shewanella amazonensis SB2B Gene: Sama_1798: Integral membrane protein	Shewanella loihica PV-4 Gene: Shew_1992: Integral membrane protein	Shewanella pealeana ATCC 700345 Gene: Spea_2221: Integral membrane protein	Shewanella halifaxensis HAW-EB4 Gene: Shal_2204: Integral membrane protein	Shewanella piezotolerans WP3 Gene: swp_2579: Integral membrane protein	Shewanella sediminis HAW-EB3 Gene: Ssed_2218: Integral membrane protein	Shewanella woodyi ATCC 51908 Gene: Swoo_2418: Integral membrane protein	Integral membrane protein
fnr	Shewanella oneidensis MR-1 Gene: SO_2356: Fumarate and nitrate reduction regulatory protein, Crp family	Shewanella putrefaciens CN-32 Gene: Sputcn32_1951: Fumarate and nitrate reduction regulatory protein, Crp family	Shewanella sp W3-18-1 Gene: Sputw3181_2054: Fumarate and nitrate reduction regulatory protein, Crp family	Shewanella sp ANA-3 Gene: Shewana3_2115: Fumarate and nitrate reduction regulatory protein, Crp family	Shewanella sp MR-4 Gene: Shewmr4_2014: Fumarate and nitrate reduction regulatory protein, Crp family	Shewanella sp MR-7 Gene: Shewmr7_1961: Fumarate and nitrate reduction regulatory protein, Crp family	Shewanella baltica OS155 Gene: Sbal_2209: Fumarate and nitrate reduction regulatory protein, Crp family	Shewanella denitrificans OS217 Gene: Sden_1843: Fumarate and nitrate reduction regulatory protein, Crp family	Shewanella frigidimarina NCIMB 400 Gene: Sfri_2018: Fumarate and nitrate reduction regulatory protein, Crp family	Shewanella amazonensis SB2B Gene: Sama_1799: Fumarate and nitrate reduction regulatory protein, Crp family	Shewanella loihica PV-4 Gene: Shew_1993: Fumarate and nitrate reduction regulatory protein, Crp family	Shewanella pealeana ATCC 700345 Gene: Spea_2222: Fumarate and nitrate reduction regulatory protein, Crp family	Shewanella halifaxensis HAW-EB4 Gene: Shal_2205: Fumarate and nitrate reduction regulatory protein, Crp family	Shewanella piezotolerans WP3 Gene: swp_2580: Fumarate and nitrate reduction regulatory protein, Crp family	Shewanella sediminis HAW-EB3 Gene: Ssed_2219: Fumarate and nitrate reduction regulatory protein, Crp family	Shewanella woodyi ATCC 51908 Gene: Swoo_2417: Fumarate and nitrate reduction regulatory protein, Crp family	Fumarate and nitrate reduction regulatory protein, Crp family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NhaR - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --