Propagation of SO3393 regulog to Shewanella loihica PV-4

Reference regulog properties
Source regulog:	SO3393 - Shewanellaceae
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Drug resistance
Effector:
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Shewanella loihica PV-4
Orthologous TF(s)	Shew_3099
Regulated genes	2

Built upon 78 sites [see more]

Predicted regulatory interactions in *Shewanella loihica PV-4*
	Locus tag	Position	Score	Sequence
Position: -33 Score: 6.7 Sequence: TCTTGAACGCTCATTCAAGA Locus tag: Shew_3098
	Shew_3098	-33	6.7	TCTTGAACGCTCATTCAAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3392
Ortholog function: NADH-dependent flavin oxidoreductase, Oye family
Shewanella oneidensis MR-1	SO_3392	-85	5.5	TATTGAACAAACATTCAAAA
		-61	5.8	TCTTGAATGATCATTCAAAT
		-34	7	TCTTGAACGTACATTCAAGA
Shewanella putrefaciens CN-32	Sputcn32_2720	-85	5.5	TTTTGAACAAACATTCAAAA
		-61	5.4	ACTTGAATGTTCATTCAAAT
		-34	7.2	TCTTGAATGCACATTCAAGA
Shewanella sp W3-18-1	Sputw3181_1292	-85	5.5	TTTTGAACAAACATTCAAAA
		-61	5.4	ACTTGAATGTTCATTCAAAT
		-34	7.2	TCTTGAATGCACATTCAAGA
Shewanella sp ANA-3	Shewana3_1159	-85	5.5	TTTTGAACAAACATTCAAAA
		-61	5.5	TCTTGAATGATCGTTCAAAT
		-34	7.2	TCTTGAATGCACATTCAAGA
Shewanella sp MR-4	Shewmr4_1158	-85	5.5	TTTTGAACAAACATTCAAAA
		-61	5.5	TCTTGAATGATCGTTCAAAT
		-34	7.2	TCTTGAATGCACATTCAAGA
Shewanella sp MR-7	Shewmr7_1229	-85	5.5	TTTTGAACAAACATTCAAAA
		-61	5.5	TCTTGAATGATCGTTCAAAT
		-34	7	TCTTGAATGCATATTCAAGA
Shewanella baltica OS155	Sbal_1249	-85	6	TTTTGAATGAACATTCAAAA
		-61	5	ACTTGAATGATCGTTCAAAT
		-34	7	TCTTGAATGCATATTCAAGA
Shewanella denitrificans OS217	Sden_1230	-59	5	ACTTGAATGAATGTTCAAAT
		-32	7.2	TCTTGAATGCACATTCAAGA
Shewanella frigidimarina NCIMB 400	Sfri_1089	-62	5.6	ACTTGAATGTGCATTCAATT
		-34	7	TCTTGAATGCATATTCAAGA
Shewanella amazonensis SB2B	Sama_2407	-86	5.7	TTTTGAATGTATGTTCAAAA
		-62	6.8	TCTTGAATGTATGTTCAAGA
		-35	5.2	TTTTGAATGCCTGTTCAAAA
Shewanella loihica PV-4	Shew_3098	-84	5.8	TTTTGAATGAACGTTCAAAA
		-33	6.7	TCTTGAACGCTCATTCAAGA
Shewanella piezotolerans WP3	swp_0975	-84	5.5	TTTTGAATGTTTGTTCAAAA
		-60	5	ACTTGAATGATTATTCAAAT
		-33	7	TCTTGAATGTTCATTCAAGA
Shewanella sediminis HAW-EB3	Ssed_3644	-84	5.5	TTTTGAATGTTTGTTCAAAA
		-60	5	ACTTGAATGATCGTTCAAAT
		-33	7	TCTTGAATGAACATTCAAGA
Shewanella woodyi ATCC 51908	Swoo_4055	-84	5.5	TTTTGAATGTTTGTTCAAAA
		-60	5	ACTTGAATGATCGTTCAAAT
		-33	7	TCTTGAATGAACATTCAAGA

Position: -118 Score: 6.7 Sequence: TCTTGAATGAGCGTTCAAGA Locus tag: Shew_3099
	Shew_3099	-118	6.7	TCTTGAATGAGCGTTCAAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3393
Ortholog function: Transcriptional regulator, TetR family
Shewanella oneidensis MR-1	SO_3393	-115	7	TCTTGAATGTACGTTCAAGA
		-88	5.8	ATTTGAATGATCATTCAAGA
		-64	5.5	TTTTGAATGTTTGTTCAATA
Shewanella putrefaciens CN-32	Sputcn32_2721	-119	7.2	TCTTGAATGTGCATTCAAGA
		-92	5.4	ATTTGAATGAACATTCAAGT
		-68	5.5	TTTTGAATGTTTGTTCAAAA
Shewanella sp W3-18-1	Sputw3181_1291	-119	7.2	TCTTGAATGTGCATTCAAGA
		-92	5.4	ATTTGAATGAACATTCAAGT
		-68	5.5	TTTTGAATGTTTGTTCAAAA
Shewanella sp ANA-3	Shewana3_1158	-114	7.2	TCTTGAATGTGCATTCAAGA
		-87	5.5	ATTTGAACGATCATTCAAGA
		-63	5.5	TTTTGAATGTTTGTTCAAAA
Shewanella sp MR-4	Shewmr4_1157	-115	7.2	TCTTGAATGTGCATTCAAGA
		-88	5.5	ATTTGAACGATCATTCAAGA
		-64	5.5	TTTTGAATGTTTGTTCAAAA
Shewanella sp MR-7	Shewmr7_1228	-115	7	TCTTGAATATGCATTCAAGA
		-88	5.5	ATTTGAACGATCATTCAAGA
		-64	5.5	TTTTGAATGTTTGTTCAAAA
Shewanella baltica OS155	Sbal_1248	-119	7	TCTTGAATATGCATTCAAGA
		-92	5	ATTTGAACGATCATTCAAGT
		-68	6	TTTTGAATGTTCATTCAAAA
Shewanella denitrificans OS217	Sden_1229	14	7.2	TCTTGAATGTGCATTCAAGA
		41	5	ATTTGAACATTCATTCAAGT
Shewanella frigidimarina NCIMB 400	Sfri_1088	-131	7	TCTTGAATATGCATTCAAGA
		-103	5.6	AATTGAATGCACATTCAAGT
Shewanella amazonensis SB2B	Sama_2408	-113	5.2	TTTTGAACAGGCATTCAAAA
		-86	6.8	TCTTGAACATACATTCAAGA
		-62	5.7	TTTTGAACATACATTCAAAA
Shewanella loihica PV-4	Shew_3099	-118	6.7	TCTTGAATGAGCGTTCAAGA
		-67	5.8	TTTTGAACGTTCATTCAAAA
Shewanella piezotolerans WP3	swp_0976	-2	7	TCTTGAATGAACATTCAAGA
		25	5	ATTTGAATAATCATTCAAGT
		49	5.5	TTTTGAACAAACATTCAAAA
Shewanella sediminis HAW-EB3	Ssed_3643	-128	7	TCTTGAATGTTCATTCAAGA
		-101	5	ATTTGAACGATCATTCAAGT
		-77	5.5	TTTTGAACAAACATTCAAAA
Shewanella woodyi ATCC 51908	Swoo_4056	-113	7	TCTTGAATGTTCATTCAAGA
		-86	5	ATTTGAACGATCATTCAAGT
		-62	5.5	TTTTGAACAAACATTCAAAA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of SO3393 regulog to Shewanella loihica PV-4

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --