Propagation of MalR regulog to Shewanella loihica PV-4

Reference regulog properties
Source regulog:	MalR - Shewanellaceae
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Maltodextrin utilization
Effector:	Maltose
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Shewanella loihica PV-4
Orthologous TF(s)	Shew_1870
Regulated genes	4

Built upon 67 sites [see more]

Predicted regulatory interactions in *Shewanella loihica PV-4*
	Locus tag	Position	Score	Sequence
Position: -316 Score: 5.6 Sequence: GATGAATACGTATGTAAT Locus tag: Shew_1874
	Shew_1874	-316	5.6	GATGAATACGTATGTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malT
Ortholog function: Predicted maltose transporter MalT
Shewanella sp MR-4	Shewmr4_1870	-378	5.6	GATGAATACGTATGTAAG
Shewanella sp MR-7	Shewmr7_2108	-378	5.6	GATGAATACGTATGTAAG
Shewanella loihica PV-4	Shew_1874	-316	5.6	GATGAATACGTATGTAAT

Position: -164 Score: 5.9 Sequence: GGTGAATACGTATGCAGC Locus tag: Shew_1876
	Shew_1876	-164	5.9	GGTGAATACGTATGCAGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: susB
Ortholog function: Alpha-glucosidase (EC 3.2.1.20)
Shewanella oneidensis MR-1	SO_2450	-90	5.4	GTGGAATACGTATGCAAG
Shewanella sp ANA-3	Shewana3_1931	-90	6	GGTGAATACGTATGCAAA
Shewanella sp MR-4	Shewmr4_1876	-90	6	GGTGAATACGTATGCAAA
Shewanella sp MR-7	Shewmr7_2102	-90	6	GGTGAATACGTATGCAAA
Shewanella baltica OS155	Sbal_2329	-90	5.9	GGTGAATACGTATGCAGG
Shewanella denitrificans OS217	Sden_2002	-100	5.7	CCTGAATACGTATGTAGT
Shewanella frigidimarina NCIMB 400	Sfri_1777	-92	6.1	ACTGAATACGTATGCAAA
Shewanella amazonensis SB2B	Sama_1108	-89	6	GCTGAATACGTATGCAGC
Shewanella loihica PV-4	Shew_1876	-164	5.9	GGTGAATACGTATGCAGC
Shewanella piezotolerans WP3	swp_2676	-111	6.1	TTTGAATACGTATGCAAG

Position: -343 Score: 6.2 Sequence: ACTGCATACGTATGCAAA Position: -192 Score: 6.1 Sequence: TTTGAATACGTATGCATA Locus tag: Shew_1888
	Shew_1888	-343	6.2	ACTGCATACGTATGCAAA
		-192	6.1	TTTGAATACGTATGCATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp(Mal)
Ortholog function: Predicted maltose-specific TonB-dependent receptor
Shewanella oneidensis MR-1	SO_2162	-351	6.2	CCTGCATACGTATGCAAA
		-202	6.1	ATTGAATACGTATGCACA
Shewanella sp ANA-3	Shewana3_2312	-353	6.2	CCTGCATACGTATGCAAA
		-204	6.1	ATTGAATACGTATGCACA
Shewanella sp MR-4	Shewmr4_2134	-353	6.2	CCTGCATACGTATGCAAA
		-204	6.1	ATTGAATACGTATGCACA
Shewanella sp MR-7	Shewmr7_2210	-353	6.2	CCTGCATACGTATGCAAA
		-204	6.1	ATTGAATACGTATGCACA
Shewanella baltica OS155	Sbal_2288	-350	6.2	CCTGCATACGTATGCAGA
		-201	6	ATTGAATACGTATGCACT
Shewanella amazonensis SB2B	Sama_1661	-356	6.1	GCTGCATACGTATGCACA
		-206	6.1	TTTGAATACGTATGCACT
Shewanella loihica PV-4	Shew_1888	-343	6.2	ACTGCATACGTATGCAAA
		-192	6.1	TTTGAATACGTATGCATA
Shewanella piezotolerans WP3	swp_2671	-336	5.9	TCTGCATACGTATGTAAT
		-187	6.1	ATTGAATACGTATGCATA

Position: -311 Score: 6.1 Sequence: TATGCATACGTATTCAAA Position: -160 Score: 6.2 Sequence: TTTGCATACGTATGCAGT Locus tag: Shew_1889
	Shew_1889	-311	6.1	TATGCATACGTATTCAAA
		-160	6.2	TTTGCATACGTATGCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: malZ
Ortholog function: Maltodextrin glucosidase (EC 3.2.1.20)
Shewanella sp ANA-3	Shewana3_2311	-312	6.1	TGTGCATACGTATTCAAT
		-163	6.2	TTTGCATACGTATGCAGG
Shewanella sp MR-4	Shewmr4_2133	-312	6.1	TGTGCATACGTATTCAAT
		-163	6.2	TTTGCATACGTATGCAGG
Shewanella sp MR-7	Shewmr7_2209	-312	6.1	TGTGCATACGTATTCAAT
		-163	6.2	TTTGCATACGTATGCAGG
Shewanella baltica OS155	Sbal_2287	-312	6	AGTGCATACGTATTCAAT
		-163	6.2	TCTGCATACGTATGCAGG
Shewanella denitrificans OS217	Sden_2028	-292	6.1	TATGCATACGTATTCAAT
		-143	6.2	TTTGCATACGTATGCAGT
Shewanella frigidimarina NCIMB 400	Sfri_1788	-296	6	TATGCATACGTATTCAAC
		-147	6.2	TTTGCATACGTATGCAGG
Shewanella amazonensis SB2B	Sama_1662	-317	6.1	AGTGCATACGTATTCAAA
		-167	6.1	TGTGCATACGTATGCAGC
Shewanella loihica PV-4	Shew_1889	-311	6.1	TATGCATACGTATTCAAA
		-160	6.2	TTTGCATACGTATGCAGT
Shewanella piezotolerans WP3	swp_2670	-303	6.1	TATGCATACGTATTCAAT
		-154	5.9	ATTACATACGTATGCAGA
Shewanella woodyi ATCC 51908	Swoo_2210	-198	6.1	TATGCATACGTATTCAAA
		-47	6.2	TATGCATACGTATGCAGA

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of MalR regulog to Shewanella loihica PV-4

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --