Propagation of MalR regulog to Shewanella loihica PV-4
| Source regulog: | MalR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Maltodextrin utilization |
| Effector: | Maltose |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella loihica PV-4 |
| Orthologous TF(s) | Shew_1870 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -316
Score: 5.6 Sequence: GATGAATACGTATGTAAT
Locus tag: Shew_1874
|
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| Shew_1874 | -316 | 5.6 | GATGAATACGTATGTAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malT | ||||
| Ortholog function: Predicted maltose transporter MalT | ||||
| Shewanella sp MR-4 | Shewmr4_1870 | -378 | 5.6 | GATGAATACGTATGTAAG |
| Shewanella sp MR-7 | Shewmr7_2108 | -378 | 5.6 | GATGAATACGTATGTAAG |
| Shewanella loihica PV-4 | Shew_1874 | -316 | 5.6 | GATGAATACGTATGTAAT |
|
Position: -164
Score: 5.9 Sequence: GGTGAATACGTATGCAGC
Locus tag: Shew_1876
|
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| Shew_1876 | -164 | 5.9 | GGTGAATACGTATGCAGC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: susB | ||||
| Ortholog function: Alpha-glucosidase (EC 3.2.1.20) | ||||
| Shewanella oneidensis MR-1 | SO_2450 | -90 | 5.4 | GTGGAATACGTATGCAAG |
| Shewanella sp ANA-3 | Shewana3_1931 | -90 | 6 | GGTGAATACGTATGCAAA |
| Shewanella sp MR-4 | Shewmr4_1876 | -90 | 6 | GGTGAATACGTATGCAAA |
| Shewanella sp MR-7 | Shewmr7_2102 | -90 | 6 | GGTGAATACGTATGCAAA |
| Shewanella baltica OS155 | Sbal_2329 | -90 | 5.9 | GGTGAATACGTATGCAGG |
| Shewanella denitrificans OS217 | Sden_2002 | -100 | 5.7 | CCTGAATACGTATGTAGT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1777 | -92 | 6.1 | ACTGAATACGTATGCAAA |
| Shewanella amazonensis SB2B | Sama_1108 | -89 | 6 | GCTGAATACGTATGCAGC |
| Shewanella loihica PV-4 | Shew_1876 | -164 | 5.9 | GGTGAATACGTATGCAGC |
| Shewanella piezotolerans WP3 | swp_2676 | -111 | 6.1 | TTTGAATACGTATGCAAG |
|
Position: -343
Score: 6.2 Sequence: ACTGCATACGTATGCAAA
Position: -192
Score: 6.1 Sequence: TTTGAATACGTATGCATA
Locus tag: Shew_1888
|
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| Shew_1888 | -343 | 6.2 | ACTGCATACGTATGCAAA | |
| -192 | 6.1 | TTTGAATACGTATGCATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp(Mal) | ||||
| Ortholog function: Predicted maltose-specific TonB-dependent receptor | ||||
| Shewanella oneidensis MR-1 | SO_2162 | -351 | 6.2 | CCTGCATACGTATGCAAA |
| -202 | 6.1 | ATTGAATACGTATGCACA | ||
| Shewanella sp ANA-3 | Shewana3_2312 | -353 | 6.2 | CCTGCATACGTATGCAAA |
| -204 | 6.1 | ATTGAATACGTATGCACA | ||
| Shewanella sp MR-4 | Shewmr4_2134 | -353 | 6.2 | CCTGCATACGTATGCAAA |
| -204 | 6.1 | ATTGAATACGTATGCACA | ||
| Shewanella sp MR-7 | Shewmr7_2210 | -353 | 6.2 | CCTGCATACGTATGCAAA |
| -204 | 6.1 | ATTGAATACGTATGCACA | ||
| Shewanella baltica OS155 | Sbal_2288 | -350 | 6.2 | CCTGCATACGTATGCAGA |
| -201 | 6 | ATTGAATACGTATGCACT | ||
| Shewanella amazonensis SB2B | Sama_1661 | -356 | 6.1 | GCTGCATACGTATGCACA |
| -206 | 6.1 | TTTGAATACGTATGCACT | ||
| Shewanella loihica PV-4 | Shew_1888 | -343 | 6.2 | ACTGCATACGTATGCAAA |
| -192 | 6.1 | TTTGAATACGTATGCATA | ||
| Shewanella piezotolerans WP3 | swp_2671 | -336 | 5.9 | TCTGCATACGTATGTAAT |
| -187 | 6.1 | ATTGAATACGTATGCATA | ||
|
Position: -311
Score: 6.1 Sequence: TATGCATACGTATTCAAA
Position: -160
Score: 6.2 Sequence: TTTGCATACGTATGCAGT
Locus tag: Shew_1889
|
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| Shew_1889 | -311 | 6.1 | TATGCATACGTATTCAAA | |
| -160 | 6.2 | TTTGCATACGTATGCAGT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: malZ | ||||
| Ortholog function: Maltodextrin glucosidase (EC 3.2.1.20) | ||||
| Shewanella sp ANA-3 | Shewana3_2311 | -312 | 6.1 | TGTGCATACGTATTCAAT |
| -163 | 6.2 | TTTGCATACGTATGCAGG | ||
| Shewanella sp MR-4 | Shewmr4_2133 | -312 | 6.1 | TGTGCATACGTATTCAAT |
| -163 | 6.2 | TTTGCATACGTATGCAGG | ||
| Shewanella sp MR-7 | Shewmr7_2209 | -312 | 6.1 | TGTGCATACGTATTCAAT |
| -163 | 6.2 | TTTGCATACGTATGCAGG | ||
| Shewanella baltica OS155 | Sbal_2287 | -312 | 6 | AGTGCATACGTATTCAAT |
| -163 | 6.2 | TCTGCATACGTATGCAGG | ||
| Shewanella denitrificans OS217 | Sden_2028 | -292 | 6.1 | TATGCATACGTATTCAAT |
| -143 | 6.2 | TTTGCATACGTATGCAGT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1788 | -296 | 6 | TATGCATACGTATTCAAC |
| -147 | 6.2 | TTTGCATACGTATGCAGG | ||
| Shewanella amazonensis SB2B | Sama_1662 | -317 | 6.1 | AGTGCATACGTATTCAAA |
| -167 | 6.1 | TGTGCATACGTATGCAGC | ||
| Shewanella loihica PV-4 | Shew_1889 | -311 | 6.1 | TATGCATACGTATTCAAA |
| -160 | 6.2 | TTTGCATACGTATGCAGT | ||
| Shewanella piezotolerans WP3 | swp_2670 | -303 | 6.1 | TATGCATACGTATTCAAT |
| -154 | 5.9 | ATTACATACGTATGCAGA | ||
| Shewanella woodyi ATCC 51908 | Swoo_2210 | -198 | 6.1 | TATGCATACGTATTCAAA |
| -47 | 6.2 | TATGCATACGTATGCAGA | ||