Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of NsrR regulog to Shewanella loihica PV-4

Reference regulog properties
Source regulog: NsrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: Rrf2
Regulation mode: repressor
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella loihica PV-4
Orthologous TF(s) Shew_3810
Regulated genes 3
Built upon 51 sites [see more]
Predicted regulatory interactions in Shewanella loihica PV-4
Locus tag Position Score Sequence
Position: -41
Score: 5.1
Sequence: ACGTGCAAATAAAAAGCATGA
Locus tag: Shew_1069
Shew_1069 -41 5.1 ACGTGCAAATAAAAAGCATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Shewanella oneidensis MR-1 SO_1363 -42 5.2 ACATGTAAAAATAAAGCATGA
Shewanella putrefaciens CN-32 Sputcn32_1174 -42 5.5 ACATGCATAAATAAAGCATGA
Shewanella sp W3-18-1 Sputw3181_2990 -42 5.5 ACATGCATAAATAAAGCATGA
Shewanella sp ANA-3 Shewana3_3011 -42 5.4 ACATGCAAAAATAAAGCATGA
Shewanella sp MR-4 Shewmr4_2832 -42 5.4 ACATGCAAAAATAAAGCATGA
Shewanella sp MR-7 Shewmr7_2914 -42 5.4 ACATGCAAAAATAAAGCATGA
Shewanella baltica OS155 Sbal_1216 -42 5.2 ACATGTAAAAATAAAGCATGA
Shewanella frigidimarina NCIMB 400 Sfri_3609 -43 5 ACATGTAAAACTTATACATGA
Shewanella amazonensis SB2B Sama_0895 -83 4.5 TGCTGCTTTTTAAATGCAGCA
-40 5.5 ACATGCATAAATAAAGCATGA
Shewanella loihica PV-4 Shew_1069 -41 5.1 ACGTGCAAATAAAAAGCATGA
Shewanella pealeana ATCC 700345 Spea_1055 -43 5.6 ACATGTAAATAATATGCATGA
Shewanella halifaxensis HAW-EB4 Shal_1103 -13 5.6 ACATGTAAATAATATGCATGA
Shewanella piezotolerans WP3 swp_3762 41 5.9 AGATGCAAATTATATGCATGT
Shewanella sediminis HAW-EB3 Ssed_1165 -42 5.4 ACATGCAAATAAAAAGCATGA
Shewanella woodyi ATCC 51908 Swoo_1260 -42 5.4 ACATGCAAATAAAAAGCATGA
Position: -64
Score: 5.2
Sequence: ACATGCATATAAATTACACCT
Locus tag: Shew_2322
Shew_2322 -64 5.2 ACATGCATATAAATTACACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nnrS
Ortholog function: NnrS protein involved in response to NO
Shewanella oneidensis MR-1 SO_2805 -59 5.4 ACATTCATTTAATTTGCAGCT
Shewanella sp ANA-3 Shewana3_2587 -58 5.4 ACATTCATTTTATTTGCAGCT
Shewanella sp MR-4 Shewmr4_2425 -58 5.4 ACATTCATTTTATTTGCAGCT
Shewanella sp MR-7 Shewmr7_2495 -58 5.4 ACATTCATTTTATTTGCAGCT
Shewanella baltica OS155 Sbal_1680 -63 5.3 ACATTCATTTTAATTGCAGCT
Shewanella amazonensis SB2B Sama_1288 -59 5.4 ACATGCATATTTTAAGCACCT
Shewanella loihica PV-4 Shew_2322 -64 5.2 ACATGCATATAAATTACACCT
Shewanella sediminis HAW-EB3 Ssed_2876 -13 4.5 ACTTGCATCTTAAATGCACCT
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