Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of SO3277 regulog to Shewanella loihica PV-4

Reference regulog properties
Source regulog: SO3277 - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Multidrug resistance
Effector:
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella loihica PV-4
Orthologous TF(s) Shew_1313
Regulated genes 2
Built upon 64 sites [see more]
Predicted regulatory interactions in Shewanella loihica PV-4
Locus tag Position Score Sequence
Position: -92
Score: 6.5
Sequence: ACTAGACTAGACAGTCCAGT
Locus tag: Shew_1312
Shew_1312 -92 6.5 ACTAGACTAGACAGTCCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3278
Ortholog function: RND family efflux transporter MFP subunit
Shewanella oneidensis MR-1 SO_3278 -88 6.1 AATGGACTAGACAGTCCAGT
-60 6.5 ACTAGACTAGCAAGTCTAGT
Shewanella putrefaciens CN-32 Sputcn32_2635 -88 6.7 AATAGACTAGACAGTCTAGT
-60 5.6 TCTAGACTAACAAGTCTAGT
Shewanella sp W3-18-1 Sputw3181_1372 -88 6.7 AATAGACTAGACAGTCTAGT
-60 5.6 TCTAGACTAACAAGTCTAGT
Shewanella sp ANA-3 Shewana3_1296 -88 6.7 AATAGACTAGACAGTCTAGT
-60 6.5 ACTAGACTAGCAAGTCTAGT
Shewanella sp MR-4 Shewmr4_1246 -87 6.7 AATAGACTAGACAGTCTAGT
-59 6.5 ACTAGACTAGCAAGTCTAGT
Shewanella sp MR-7 Shewmr7_1316 -88 6.7 AATAGACTAGACAGTCTAGT
-60 6.5 ACTAGACTAGCAAGTCTAGT
Shewanella baltica OS155 Sbal_2973 -89 6.7 AATAGACTAGACAGTCTAGT
-61 6.5 ACTAGACTAGCAAGTCTAGT
Shewanella denitrificans OS217 Sden_1278 -134 6.8 AATAGACTGGACAGTCTAGT
-106 6 AATAGACTTGGTAGTCTAGT
Shewanella frigidimarina NCIMB 400 Sfri_1148 -165 6.8 AATAGACTGGACAGTCTAGT
-137 5.5 ACTAGACTACTGAGTCTAGT
Shewanella amazonensis SB2B Sama_2342 -101 6.4 AATAGACTAGACAGTCCAGT
-73 6.4 AATAGACTAGACAGTCCAGT
Shewanella loihica PV-4 Shew_1312 -92 6.5 ACTAGACTAGACAGTCCAGT
-64 5.6 ATTAGACTAACAAGTCTAGT
Shewanella pealeana ATCC 700345 Spea_1325 -104 7 ACTAGACTGGACAGTCTAGT
-76 6 ACTAGACTAGACAGTCCAGC
Shewanella halifaxensis HAW-EB4 Shal_1388 -105 6.5 AATGGACTGGACAGTCTAGT
-77 6.4 ACTAGACTAGGCAGTCTAGT
Shewanella piezotolerans WP3 swp_1475 -105 6.5 AATGGACTGGACAGTCTAGT
-77 6.7 AATAGACTAGACAGTCTAGT
Shewanella sediminis HAW-EB3 Ssed_3112 -93 7 ACTAGACTGGACAGTCTAGT
-65 6.3 AATAGACTAGGCAGTCTAGT
Shewanella woodyi ATCC 51908 Swoo_1570 -92 7 ACTAGACTGGACAGTCTAGT
-64 6.7 AATAGACTAGACAGTCTAGT
Position: -70
Score: 6.5
Sequence: ACTGGACTGTCTAGTCTAGT
Locus tag: Shew_1313
Shew_1313 -70 6.5 ACTGGACTGTCTAGTCTAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3277
Ortholog function: Transcriptional regulator, TetR family
Shewanella oneidensis MR-1 SO_3277 -150 6.5 ACTAGACTTGCTAGTCTAGT
-122 6.1 ACTGGACTGTCTAGTCCATT
Shewanella putrefaciens CN-32 Sputcn32_2634 -98 5.6 ACTAGACTTGTTAGTCTAGA
-70 6.7 ACTAGACTGTCTAGTCTATT
Shewanella sp W3-18-1 Sputw3181_1373 -98 5.6 ACTAGACTTGTTAGTCTAGA
-70 6.7 ACTAGACTGTCTAGTCTATT
Shewanella sp ANA-3 Shewana3_1297 -97 6.5 ACTAGACTTGCTAGTCTAGT
-69 6.7 ACTAGACTGTCTAGTCTATT
Shewanella sp MR-4 Shewmr4_1247 -97 6.5 ACTAGACTTGCTAGTCTAGT
-69 6.7 ACTAGACTGTCTAGTCTATT
Shewanella sp MR-7 Shewmr7_1317 -97 6.5 ACTAGACTTGCTAGTCTAGT
-69 6.7 ACTAGACTGTCTAGTCTATT
Shewanella baltica OS155 Sbal_2972 -74 6.5 ACTAGACTTGCTAGTCTAGT
-46 6.7 ACTAGACTGTCTAGTCTATT
Shewanella denitrificans OS217 Sden_1279 -123 6 ACTAGACTACCAAGTCTATT
-95 6.8 ACTAGACTGTCCAGTCTATT
Shewanella frigidimarina NCIMB 400 Sfri_1149 -97 5.5 ACTAGACTCAGTAGTCTAGT
-69 6.8 ACTAGACTGTCCAGTCTATT
Shewanella amazonensis SB2B Sama_2341 -100 6.4 ACTGGACTGTCTAGTCTATT
-72 6.4 ACTGGACTGTCTAGTCTATT
Shewanella loihica PV-4 Shew_1313 -98 5.6 ACTAGACTTGTTAGTCTAAT
-70 6.5 ACTGGACTGTCTAGTCTAGT
Shewanella pealeana ATCC 700345 Spea_1326 -130 6 GCTGGACTGTCTAGTCTAGT
-102 7 ACTAGACTGTCCAGTCTAGT
Shewanella halifaxensis HAW-EB4 Shal_1389 -137 6.4 ACTAGACTGCCTAGTCTAGT
-109 6.5 ACTAGACTGTCCAGTCCATT
Shewanella piezotolerans WP3 swp_1476 -100 6.7 ACTAGACTGTCTAGTCTATT
-72 6.5 ACTAGACTGTCCAGTCCATT
Shewanella sediminis HAW-EB3 Ssed_3111 -100 6.3 ACTAGACTGCCTAGTCTATT
-72 7 ACTAGACTGTCCAGTCTAGT
Shewanella woodyi ATCC 51908 Swoo_1571 -103 6.7 ACTAGACTGTCTAGTCTATT
-75 7 ACTAGACTGTCCAGTCTAGT
© 2009-2020 RegPrecise