Propagation of SO3277 regulog to Shewanella loihica PV-4
| Source regulog: | SO3277 - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Multidrug resistance |
| Effector: | |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella loihica PV-4 |
| Orthologous TF(s) | Shew_1313 |
| Regulated genes | 2 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -92
Score: 6.5 Sequence: ACTAGACTAGACAGTCCAGT
Locus tag: Shew_1312
|
||||
| Shew_1312 | -92 | 6.5 | ACTAGACTAGACAGTCCAGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3278 | ||||
| Ortholog function: RND family efflux transporter MFP subunit | ||||
| Shewanella oneidensis MR-1 | SO_3278 | -88 | 6.1 | AATGGACTAGACAGTCCAGT |
| -60 | 6.5 | ACTAGACTAGCAAGTCTAGT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2635 | -88 | 6.7 | AATAGACTAGACAGTCTAGT |
| -60 | 5.6 | TCTAGACTAACAAGTCTAGT | ||
| Shewanella sp W3-18-1 | Sputw3181_1372 | -88 | 6.7 | AATAGACTAGACAGTCTAGT |
| -60 | 5.6 | TCTAGACTAACAAGTCTAGT | ||
| Shewanella sp ANA-3 | Shewana3_1296 | -88 | 6.7 | AATAGACTAGACAGTCTAGT |
| -60 | 6.5 | ACTAGACTAGCAAGTCTAGT | ||
| Shewanella sp MR-4 | Shewmr4_1246 | -87 | 6.7 | AATAGACTAGACAGTCTAGT |
| -59 | 6.5 | ACTAGACTAGCAAGTCTAGT | ||
| Shewanella sp MR-7 | Shewmr7_1316 | -88 | 6.7 | AATAGACTAGACAGTCTAGT |
| -60 | 6.5 | ACTAGACTAGCAAGTCTAGT | ||
| Shewanella baltica OS155 | Sbal_2973 | -89 | 6.7 | AATAGACTAGACAGTCTAGT |
| -61 | 6.5 | ACTAGACTAGCAAGTCTAGT | ||
| Shewanella denitrificans OS217 | Sden_1278 | -134 | 6.8 | AATAGACTGGACAGTCTAGT |
| -106 | 6 | AATAGACTTGGTAGTCTAGT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1148 | -165 | 6.8 | AATAGACTGGACAGTCTAGT |
| -137 | 5.5 | ACTAGACTACTGAGTCTAGT | ||
| Shewanella amazonensis SB2B | Sama_2342 | -101 | 6.4 | AATAGACTAGACAGTCCAGT |
| -73 | 6.4 | AATAGACTAGACAGTCCAGT | ||
| Shewanella loihica PV-4 | Shew_1312 | -92 | 6.5 | ACTAGACTAGACAGTCCAGT |
| -64 | 5.6 | ATTAGACTAACAAGTCTAGT | ||
| Shewanella pealeana ATCC 700345 | Spea_1325 | -104 | 7 | ACTAGACTGGACAGTCTAGT |
| -76 | 6 | ACTAGACTAGACAGTCCAGC | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1388 | -105 | 6.5 | AATGGACTGGACAGTCTAGT |
| -77 | 6.4 | ACTAGACTAGGCAGTCTAGT | ||
| Shewanella piezotolerans WP3 | swp_1475 | -105 | 6.5 | AATGGACTGGACAGTCTAGT |
| -77 | 6.7 | AATAGACTAGACAGTCTAGT | ||
| Shewanella sediminis HAW-EB3 | Ssed_3112 | -93 | 7 | ACTAGACTGGACAGTCTAGT |
| -65 | 6.3 | AATAGACTAGGCAGTCTAGT | ||
| Shewanella woodyi ATCC 51908 | Swoo_1570 | -92 | 7 | ACTAGACTGGACAGTCTAGT |
| -64 | 6.7 | AATAGACTAGACAGTCTAGT | ||
|
Position: -70
Score: 6.5 Sequence: ACTGGACTGTCTAGTCTAGT
Locus tag: Shew_1313
|
||||
| Shew_1313 | -70 | 6.5 | ACTGGACTGTCTAGTCTAGT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3277 | ||||
| Ortholog function: Transcriptional regulator, TetR family | ||||
| Shewanella oneidensis MR-1 | SO_3277 | -150 | 6.5 | ACTAGACTTGCTAGTCTAGT |
| -122 | 6.1 | ACTGGACTGTCTAGTCCATT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2634 | -98 | 5.6 | ACTAGACTTGTTAGTCTAGA |
| -70 | 6.7 | ACTAGACTGTCTAGTCTATT | ||
| Shewanella sp W3-18-1 | Sputw3181_1373 | -98 | 5.6 | ACTAGACTTGTTAGTCTAGA |
| -70 | 6.7 | ACTAGACTGTCTAGTCTATT | ||
| Shewanella sp ANA-3 | Shewana3_1297 | -97 | 6.5 | ACTAGACTTGCTAGTCTAGT |
| -69 | 6.7 | ACTAGACTGTCTAGTCTATT | ||
| Shewanella sp MR-4 | Shewmr4_1247 | -97 | 6.5 | ACTAGACTTGCTAGTCTAGT |
| -69 | 6.7 | ACTAGACTGTCTAGTCTATT | ||
| Shewanella sp MR-7 | Shewmr7_1317 | -97 | 6.5 | ACTAGACTTGCTAGTCTAGT |
| -69 | 6.7 | ACTAGACTGTCTAGTCTATT | ||
| Shewanella baltica OS155 | Sbal_2972 | -74 | 6.5 | ACTAGACTTGCTAGTCTAGT |
| -46 | 6.7 | ACTAGACTGTCTAGTCTATT | ||
| Shewanella denitrificans OS217 | Sden_1279 | -123 | 6 | ACTAGACTACCAAGTCTATT |
| -95 | 6.8 | ACTAGACTGTCCAGTCTATT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1149 | -97 | 5.5 | ACTAGACTCAGTAGTCTAGT |
| -69 | 6.8 | ACTAGACTGTCCAGTCTATT | ||
| Shewanella amazonensis SB2B | Sama_2341 | -100 | 6.4 | ACTGGACTGTCTAGTCTATT |
| -72 | 6.4 | ACTGGACTGTCTAGTCTATT | ||
| Shewanella loihica PV-4 | Shew_1313 | -98 | 5.6 | ACTAGACTTGTTAGTCTAAT |
| -70 | 6.5 | ACTGGACTGTCTAGTCTAGT | ||
| Shewanella pealeana ATCC 700345 | Spea_1326 | -130 | 6 | GCTGGACTGTCTAGTCTAGT |
| -102 | 7 | ACTAGACTGTCCAGTCTAGT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1389 | -137 | 6.4 | ACTAGACTGCCTAGTCTAGT |
| -109 | 6.5 | ACTAGACTGTCCAGTCCATT | ||
| Shewanella piezotolerans WP3 | swp_1476 | -100 | 6.7 | ACTAGACTGTCTAGTCTATT |
| -72 | 6.5 | ACTAGACTGTCCAGTCCATT | ||
| Shewanella sediminis HAW-EB3 | Ssed_3111 | -100 | 6.3 | ACTAGACTGCCTAGTCTATT |
| -72 | 7 | ACTAGACTGTCCAGTCTAGT | ||
| Shewanella woodyi ATCC 51908 | Swoo_1571 | -103 | 6.7 | ACTAGACTGTCTAGTCTATT |
| -75 | 7 | ACTAGACTGTCCAGTCTAGT | ||