Propagation of NagR regulog to Shewanella loihica PV-4
| Source regulog: | NagR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | N-acetylglucosamine utilization |
| Effector: | N-acetylglucosamine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella loihica PV-4 |
| Orthologous TF(s) | Shew_1111 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -119
Score: 6.4 Sequence: AATGACAACGCTGTCATT
Locus tag: Shew_0815
|
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| Shew_0815 | -119 | 6.4 | AATGACAACGCTGTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagB | ||||
| Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6) | ||||
| Shewanella loihica PV-4 | Shew_0815 | -119 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella pealeana ATCC 700345 | Spea_0760 | -182 | 6.4 | AATGACAGCGTTGTCATT |
| Shewanella halifaxensis HAW-EB4 | Shal_0813 | -84 | 6.4 | AATGACAGCGTTGTCATT |
| Shewanella piezotolerans WP3 | swp_4289 | -91 | 6.4 | AATGACAGCGTTGTCATT |
| Shewanella sediminis HAW-EB3 | Ssed_0844 | -84 | 6.4 | AATGACAGCGTTGTCATT |
| Shewanella woodyi ATCC 51908 | Swoo_0943 | -190 | 6.4 | AATGACAGCGTTGTCATT |
|
Position: -76
Score: 6.2 Sequence: CATGACAGCGTTGTCATT
Locus tag: Shew_1112
|
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| Shew_1112 | -76 | 6.2 | CATGACAGCGTTGTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp_nag | ||||
| Ortholog function: N-acetylglucosamine-regulated TonB-dependent outer membrane receptor | ||||
| Shewanella oneidensis MR-1 | SO_3514 | -74 | 6.2 | CATGACAGCGTTGTCATT |
| Shewanella putrefaciens CN-32 | Sputcn32_1074 | -75 | 6.2 | CATGACAGCGTTGTCATT |
| Shewanella sp W3-18-1 | Sputw3181_3091 | -75 | 6.2 | CATGACAGCGTTGTCATT |
| Shewanella sp MR-7 | Shewmr7_3024 | -348 | 5.1 | GCCGACAGCGTTGTCAGC |
| -74 | 6.2 | CATGACAGCGTTGTCATT | ||
| Shewanella loihica PV-4 | Shew_1112 | -76 | 6.2 | CATGACAGCGTTGTCATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1145 | -78 | 6.2 | CATGACAGCGTTGTCATT |
|
Position: -106
Score: 6.4 Sequence: AATGACAGCGTTGTCATT
Locus tag: Shew_1116
|
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| Shew_1116 | -106 | 6.4 | AATGACAGCGTTGTCATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagK | ||||
| Ortholog function: N-acetylglucosamine kinase of eukaryotic type (EC 2.7.1.59) | ||||
| Shewanella oneidensis MR-1 | SO_3507 | -115 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella putrefaciens CN-32 | Sputcn32_1076 | -90 | 6.4 | AATGACAACGCTGTCATC |
| Shewanella sp W3-18-1 | Sputw3181_3089 | -90 | 6.4 | AATGACAACGCTGTCATC |
| Shewanella sp ANA-3 | Shewana3_3114 | -114 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella sp MR-4 | Shewmr4_2935 | -114 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella sp MR-7 | Shewmr7_3017 | -114 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella baltica OS155 | Sbal_1084 | -113 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella denitrificans OS217 | Sden_2706 | -101 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella amazonensis SB2B | Sama_0944 | -105 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella loihica PV-4 | Shew_1116 | -106 | 6.4 | AATGACAGCGTTGTCATT |
| Shewanella pealeana ATCC 700345 | Spea_1101 | -123 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1149 | -124 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella piezotolerans WP3 | swp_3703 | -106 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella sediminis HAW-EB3 | Ssed_1212 | -106 | 6.4 | AATGACAACGCTGTCATT |
| Shewanella woodyi ATCC 51908 | Swoo_1312 | -108 | 6.4 | AATGACAACGCTGTCATT |
|
Position: -186
Score: 6.1 Sequence: AATGACAGCGTTGTCTTT
Locus tag: Shew_1119
|
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| Shew_1119 | -186 | 6.1 | AATGACAGCGTTGTCTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nagP | ||||
| Ortholog function: N-acetylglucosamine transporter, NagP | ||||
| Shewanella oneidensis MR-1 | SO_3503 | -175 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1080 | -179 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella sp W3-18-1 | Sputw3181_3084 | -179 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella sp ANA-3 | Shewana3_3110 | -177 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella sp MR-4 | Shewmr4_2931 | -178 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella sp MR-7 | Shewmr7_3013 | -178 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella baltica OS155 | Sbal_1088 | -179 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella denitrificans OS217 | Sden_2702 | -138 | 5.6 | AATGACAGCGTTGTCTTA |
| Shewanella amazonensis SB2B | Sama_0948 | -167 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella loihica PV-4 | Shew_1119 | -186 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella pealeana ATCC 700345 | Spea_1104 | -198 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1152 | -199 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella piezotolerans WP3 | swp_3698 | -177 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella sediminis HAW-EB3 | Ssed_1215 | -168 | 6.1 | AATGACAGCGTTGTCTTT |
| Shewanella woodyi ATCC 51908 | Swoo_1315 | -172 | 6.1 | AATGACAGCGTTGTCTTT |