Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of GlmR regulog to Shewanella loihica PV-4

Reference regulog properties
Source regulog: GlmR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: DeoR
Regulation mode: repressor
Biological process: Lipopolysaccharide biosynthesis
Effector: Glucosamine-6-phosphate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella loihica PV-4
Orthologous TF(s) Shew_3840
Regulated genes 1
Built upon 16 sites [see more]
Predicted regulatory interactions in Shewanella loihica PV-4
Locus tag Position Score Sequence
Position: -33
Score: 6.4
Locus tag: Shew_3840
Supported by regulated orthologs from reference regulons
Ortholog gene name: glmR
Ortholog function: Transcriptional regulator of glmS gene, DeoR family
Shewanella oneidensis MR-1 SO_4742 -33 6.6 ACCTTTCGAATCGAAAGTT
Shewanella putrefaciens CN-32 Sputcn32_3952 -33 6.6 ATCTTTCGAATCGAAACTT
Shewanella sp W3-18-1 Sputw3181_4049 -33 6.6 ATCTTTCGAATCGAAACTT
Shewanella sp ANA-3 Shewana3_4126 -33 6.9 AACTTTCGAATCGAAAGTT
Shewanella sp MR-4 Shewmr4_3921 -21 6.9 AACTTTCGAATCGAAAGTT
Shewanella sp MR-7 Shewmr7_4013 -33 6.9 AACTTTCGAATCGAAAGTT
Shewanella baltica OS155 Sbal_4362 -33 6.6 ATCTTTCGAATCGAAACTT
Shewanella denitrificans OS217 Sden_3744 -40 6.2 ATCTTTCGCTTCGAAACTT
Shewanella frigidimarina NCIMB 400 Sfri_4041 -41 6.4 ATCTTTCGTTTCGAAACTT
Shewanella amazonensis SB2B Sama_3640 -35 6.8 ATCTTTCGATTCGAAAGTT
Shewanella loihica PV-4 Shew_3840 -33 6.4 ATCTTTCGAAACGAAACTT
Shewanella pealeana ATCC 700345 Spea_4235 4 6.2 ATCTTTCGAACCGAAACTT
Shewanella halifaxensis HAW-EB4 Shal_4286 -32 6.1 TTCTTTCGAATCGAAACTT
Shewanella piezotolerans WP3 swp_5149 -32 6.4 ATCTTTCGAAACGAAACTT
Shewanella sediminis HAW-EB3 Ssed_4482 -33 6.2 ACCTTTCGAAACGAAACTT
Shewanella woodyi ATCC 51908 Swoo_4893 -33 6.4 ATCTTTCGAAACGAAACTT