Propagation of GlmR regulog to Shewanella loihica PV-4
| Source regulog: | GlmR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | DeoR |
| Regulation mode: | repressor |
| Biological process: | Lipopolysaccharide biosynthesis |
| Effector: | Glucosamine-6-phosphate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella loihica PV-4 |
| Orthologous TF(s) | Shew_3840 |
| Regulated genes | 1 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -33
Score: 6.4 Sequence: ATCTTTCGAAACGAAACTT
Locus tag: Shew_3840
|
||||
| Shew_3840 | -33 | 6.4 | ATCTTTCGAAACGAAACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glmR | ||||
| Ortholog function: Transcriptional regulator of glmS gene, DeoR family | ||||
| Shewanella oneidensis MR-1 | SO_4742 | -33 | 6.6 | ACCTTTCGAATCGAAAGTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3952 | -33 | 6.6 | ATCTTTCGAATCGAAACTT |
| Shewanella sp W3-18-1 | Sputw3181_4049 | -33 | 6.6 | ATCTTTCGAATCGAAACTT |
| Shewanella sp ANA-3 | Shewana3_4126 | -33 | 6.9 | AACTTTCGAATCGAAAGTT |
| Shewanella sp MR-4 | Shewmr4_3921 | -21 | 6.9 | AACTTTCGAATCGAAAGTT |
| Shewanella sp MR-7 | Shewmr7_4013 | -33 | 6.9 | AACTTTCGAATCGAAAGTT |
| Shewanella baltica OS155 | Sbal_4362 | -33 | 6.6 | ATCTTTCGAATCGAAACTT |
| Shewanella denitrificans OS217 | Sden_3744 | -40 | 6.2 | ATCTTTCGCTTCGAAACTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_4041 | -41 | 6.4 | ATCTTTCGTTTCGAAACTT |
| Shewanella amazonensis SB2B | Sama_3640 | -35 | 6.8 | ATCTTTCGATTCGAAAGTT |
| Shewanella loihica PV-4 | Shew_3840 | -33 | 6.4 | ATCTTTCGAAACGAAACTT |
| Shewanella pealeana ATCC 700345 | Spea_4235 | 4 | 6.2 | ATCTTTCGAACCGAAACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4286 | -32 | 6.1 | TTCTTTCGAATCGAAACTT |
| Shewanella piezotolerans WP3 | swp_5149 | -32 | 6.4 | ATCTTTCGAAACGAAACTT |
| Shewanella sediminis HAW-EB3 | Ssed_4482 | -33 | 6.2 | ACCTTTCGAAACGAAACTT |
| Shewanella woodyi ATCC 51908 | Swoo_4893 | -33 | 6.4 | ATCTTTCGAAACGAAACTT |