Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog GlmR - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: DeoR
Regulation mode: repressor
Biological process: Lipopolysaccharide biosynthesis
Effector: Glucosamine-6-phosphate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 16 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 2 1
Shewanella putrefaciens CN-32 2 1
Shewanella sp W3-18-1 2 1
Shewanella sp ANA-3 2 1
Shewanella sp MR-4 2 1
Shewanella sp MR-7 2 1
Shewanella baltica OS155 2 1
Shewanella denitrificans OS217 2 1
Shewanella frigidimarina NCIMB 400 2 1
Shewanella amazonensis SB2B 2 1
Shewanella loihica PV-4 2 1
Shewanella pealeana ATCC 700345 2 1
Shewanella halifaxensis HAW-EB4 2 1
Shewanella piezotolerans WP3 2 1
Shewanella sediminis HAW-EB3 2 1
Shewanella woodyi ATCC 51908 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glmR
*
Shewanella oneidensis MR-1

Site:
position = -33
score = 6.58226
sequence = ACCTTTCGAATCGAAAGTT

Gene: SO_4742: Transcriptional regulator of glmS gene, DeoR family
*
Shewanella putrefaciens CN-32

Site:
position = -33
score = 6.6447
sequence = ATCTTTCGAATCGAAACTT

Gene: Sputcn32_3952: Transcriptional regulator of glmS gene, DeoR family
*
Shewanella sp W3-18-1

Site:
position = -33
score = 6.6447
sequence = ATCTTTCGAATCGAAACTT

Gene: Sputw3181_4049: Transcriptional regulator of glmS gene, DeoR family
*
Shewanella sp ANA-3

Site:
position = -33
score = 6.86896
sequence = AACTTTCGAATCGAAAGTT

Gene: Shewana3_4126: Transcriptional regulator of glmS gene, DeoR family
*
Shewanella sp MR-4

Site:
position = -21
score = 6.86896
sequence = AACTTTCGAATCGAAAGTT

Gene: Shewmr4_3921: Transcriptional regulator of glmS gene, DeoR family
*
Shewanella sp MR-7

Site:
position = -33
score = 6.86896
sequence = AACTTTCGAATCGAAAGTT

Gene: Shewmr7_4013: Transcriptional regulator of glmS gene, DeoR family
*
Shewanella baltica OS155

Site:
position = -33
score = 6.6447
sequence = ATCTTTCGAATCGAAACTT

Gene: Sbal_4362: Transcriptional regulator of glmS gene, DeoR family
*
Shewanella denitrificans OS217

Site:
position = -40
score = 6.24507
sequence = ATCTTTCGCTTCGAAACTT

Gene: Sden_3744: Transcriptional regulator of glmS gene, DeoR family
*
Shewanella frigidimarina NCIMB 400

Site:
position = -41
score = 6.36559
sequence = ATCTTTCGTTTCGAAACTT

Gene: Sfri_4041: Transcriptional regulator of glmS gene, DeoR family
*
Shewanella amazonensis SB2B

Site:
position = -35
score = 6.7658
sequence = ATCTTTCGATTCGAAAGTT

Gene: Sama_3640: Transcriptional regulator of glmS gene, DeoR family
*
Shewanella loihica PV-4

Site:
position = -33
score = 6.36559
sequence = ATCTTTCGAAACGAAACTT

Gene: Shew_3840: Transcriptional regulator of glmS gene, DeoR family
*
Shewanella pealeana ATCC 700345

Site:
position = 4
score = 6.24507
sequence = ATCTTTCGAACCGAAACTT

Gene: Spea_4235: Transcriptional regulator of glmS gene, DeoR family
*
Shewanella halifaxensis HAW-EB4

Site:
position = -32
score = 6.07917
sequence = TTCTTTCGAATCGAAACTT

Gene: Shal_4286: Transcriptional regulator of glmS gene, DeoR family
*
Shewanella piezotolerans WP3

Site:
position = -32
score = 6.36559
sequence = ATCTTTCGAAACGAAACTT

Gene: swp_5149: Transcriptional regulator of glmS gene, DeoR family
*
Shewanella sediminis HAW-EB3

Site:
position = -33
score = 6.18206
sequence = ACCTTTCGAAACGAAACTT

Gene: Ssed_4482: Transcriptional regulator of glmS gene, DeoR family
*
Shewanella woodyi ATCC 51908

Site:
position = -33
score = 6.36559
sequence = ATCTTTCGAAACGAAACTT

Gene: Swoo_4893: Transcriptional regulator of glmS gene, DeoR family
Transcriptional regulator of glmS gene, DeoR family
glmS
 
Shewanella oneidensis MR-1

Gene: SO_4741: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_3951: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
 
Shewanella sp W3-18-1

Gene: Sputw3181_4048: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
 
Shewanella sp ANA-3

Gene: Shewana3_4125: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
 
Shewanella sp MR-4

Gene: Shewmr4_3920: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
 
Shewanella sp MR-7

Gene: Shewmr7_4012: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
 
Shewanella baltica OS155

Gene: Sbal_4361: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
 
Shewanella denitrificans OS217

Gene: Sden_3743: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_4040: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
 
Shewanella amazonensis SB2B

Gene: Sama_3639: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
 
Shewanella loihica PV-4

Gene: Shew_3839: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
 
Shewanella pealeana ATCC 700345

Gene: Spea_4234: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_4285: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
 
Shewanella piezotolerans WP3

Gene: swp_5148: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_4481: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_4892: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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