Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of TyrR regulog to Shewanella loihica PV-4

Reference regulog properties
Source regulog: TyrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella loihica PV-4
Orthologous TF(s) Shew_1437
Regulated genes 17
Built upon 312 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

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© 2009-2020 RegPrecise
Predicted regulatory interactions in Shewanella loihica PV-4
Locus tag Position Score Sequence
Position: -102
Score: 4.6
Sequence: GTGTAATAAGAAGTTTACAC
Locus tag: Shew_0769
Shew_0769 -102 4.6 GTGTAATAAGAAGTTTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: brnQ
Ortholog function: Branched-chain amino acid transport system carrier protein
Shewanella oneidensis MR-1 SO_0949 -121 5 GTGTAAACATAGGTTTGCAC
Shewanella putrefaciens CN-32 Sputcn32_0889 -107 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp W3-18-1 Sputw3181_3284 -107 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp ANA-3 Shewana3_3332 -106 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp MR-4 Shewmr4_0794 -106 5.1 GTGTAAACATAGATTTGCAC
Shewanella sp MR-7 Shewmr7_3229 -106 5.1 GTGTAAACATAGATTTGCAC
Shewanella baltica OS155 Sbal_0842 -107 5.1 GTGTAAACAAAGATTTGCAC
Shewanella denitrificans OS217 Sden_0746 -229 4.1 GAGTATCGAAAAGTTTACAC
Shewanella frigidimarina NCIMB 400 Sfri_0662 -122 4.8 GTGTATTTTTAACTTTACAA
Shewanella amazonensis SB2B Sama_2740 -109 4.5 CTGTAATTCTGGCGTTACAC
Shewanella loihica PV-4 Shew_0769 -102 4.6 GTGTAATAAGAAGTTTACAC
Shewanella pealeana ATCC 700345 Spea_0804 -90 5.2 GTGTAAAGTAATAATTACAC
Shewanella halifaxensis HAW-EB4 Shal_0859 -94 5.1 GTGTAAACTAATCATTACAC
Shewanella piezotolerans WP3 swp_4229 -153 5 GTGTAAACCAAATATTACAC
Shewanella sediminis HAW-EB3 Ssed_0892 -106 4.6 GTGTAATTGAAAGTTTACAC
Shewanella woodyi ATCC 51908 Swoo_0894 -67 5.1 GTGTAATCTAAAGTTTACAC
Position: -101
Score: 3.3
Sequence: GTTTCAAGCTGTATGGCCAT
Position: -93
Score: 3.9
Sequence: CTGTATGGCCATCATTACAA
Locus tag: Shew_1275
Shew_1275 -101 3.3 GTTTCAAGCTGTATGGCCAT
-93 3.9 CTGTATGGCCATCATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: Malate synthase (EC 2.3.3.9)
Shewanella oneidensis MR-1 SO_1483 -372 3.7 GTGTAATCATTGTTTTTCGA
Shewanella putrefaciens CN-32 Sputcn32_1238 -304 4.7 GTGTAATTATAAATTTACGT
Shewanella sp W3-18-1 Sputw3181_2866 -303 4.5 GTGTAATTATAAATTTACTT
Shewanella sp ANA-3 Shewana3_2943 -372 4.3 CTGTATATTTAAATTTTCAA
Shewanella sp MR-4 Shewmr4_2767 -372 4.3 CTGTATAGTTAAATTTTCAA
Shewanella sp MR-7 Shewmr7_2845 -372 3.8 CTGTACATTTAAATTTTCAG
Shewanella baltica OS155 Sbal_1316 -380 3.6 CTGTATTAATATATTTACTG
Shewanella denitrificans OS217 Sden_1245 -324 4 TTGTAAGTTATTATTTACTG
Shewanella frigidimarina NCIMB 400 Sfri_1101 -458 4.4 tgGTAAAGaaAtATTTACAg
Shewanella amazonensis SB2B Sama_2381 -450 4.1 TTGTAAATTAAATATTAAAT
-364 3.7 GTGTATTAAAAATCTTACAG
Shewanella loihica PV-4 Shew_1275 -393 3.4 CTGTATCGACAAAATTACTA
Shewanella pealeana ATCC 700345 Spea_1290 -415 3.9 GTGGCAATAATTGTTAACGA
Shewanella halifaxensis HAW-EB4 Shal_1352 -458 4.1 aTGTAAAagTAtATTgACgC
Shewanella piezotolerans WP3 swp_1433 -412 4.2 CTGTATTTATAATATTACAC
Shewanella sediminis HAW-EB3 Ssed_1414 -371 4.2 CTGTAAGTTTATTTTTACGC
Shewanella woodyi ATCC 51908 Swoo_1528 -401 3.9 GTGTATCATTAAGTTTACTT
-341 3.6 TTGGTAAATTTGTCTGACAA
Position: -87
Score: 4.7
Sequence: ATGTAAATTTGAGGTTACAT
Locus tag: Shew_1435
Shew_1435 -87 4.7 ATGTAAATTTGAGGTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: phhA
Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Shewanella oneidensis MR-1 SO_1666 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella putrefaciens CN-32 Sputcn32_1386 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp W3-18-1 Sputw3181_2715 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp ANA-3 Shewana3_2781 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella sp MR-4 Shewmr4_2607 -122 4.4 TTGTAATATTTACTTTACGT
Shewanella sp MR-7 Shewmr7_2674 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella baltica OS155 Sbal_1484 -122 4.4 TTGTAATATTTGCTTTACGT
Shewanella denitrificans OS217 Sden_2595 -127 4.4 TTGTATGCTTAAGTTTACAA
Shewanella frigidimarina NCIMB 400 Sfri_1328 -121 4.1 TTGTATTTATTTGTTTACGA
Shewanella amazonensis SB2B Sama_2222 -123 4.3 TTGTAATAAAAGCTTTACGA
Shewanella loihica PV-4 Shew_1435 -87 4.7 ATGTAAATTTGAGGTTACAT
Shewanella pealeana ATCC 700345 Spea_1448 -239 4.3 GTGTCAATTTCTATATACGC
-173 4.8 GTGTAACATTAGCATTACAC
Shewanella halifaxensis HAW-EB4 Shal_1531 -133 4.3 GTGTAACAACTTCGTTACAC
Shewanella piezotolerans WP3 swp_1650 -188 4.6 CTGTAAATTATGGCTTACAA
-123 4.5 ATGTAAACTTATGGTTACGC
Shewanella sediminis HAW-EB3 Ssed_2930 -188 3.7 TCGTCAATAAATGGTGACGA
-122 4.2 TTGTAAGCAAATTGTTACAC
Shewanella woodyi ATCC 51908 Swoo_1715 -186 3.8 TTGGCAATAATTCAATACGA
-121 4.6 GTGTAACTTTTTGGTTACAA
Position: -162
Score: 4.7
Sequence: GTGTAAACAACTCTTGCCAC
Locus tag: Shew_1437
Shew_1437 -162 4.7 GTGTAAACAACTCTTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: tyrR
Ortholog function: Transcriptional regulator of aromatic amino acid biosynthesis
Shewanella oneidensis MR-1 SO_1669 -190 4.7 CTGTAAACTAGGCTTGCCAC
Shewanella putrefaciens CN-32 Sputcn32_1388 -188 4.8 CTGTAAACTTGACTTGCCAC
Shewanella sp W3-18-1 Sputw3181_2713 -188 4.8 CTGTAAACTTGACTTGCCAC
Shewanella sp ANA-3 Shewana3_2779 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella sp MR-4 Shewmr4_2605 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella sp MR-7 Shewmr7_2672 -205 4.7 CTGTAAACTAGACTTGCCAC
Shewanella baltica OS155 Sbal_1486 -196 4.7 CTGTAAACTAGGCTTGCCAC
Shewanella denitrificans OS217 Sden_2593 -155 4.6 CTGTAAACAAGACTTGCCAC
Shewanella frigidimarina NCIMB 400 Sfri_1330 -92 4.7 CTGTAAACTTCACTTGCCAC
Shewanella amazonensis SB2B Sama_2220 -134 4.6 CTGTAAACAAGACTTGCCAC
Shewanella loihica PV-4 Shew_1437 -162 4.7 GTGTAAACAACTCTTGCCAC
Shewanella pealeana ATCC 700345 Spea_1450 -158 4.6 CTGTAAACAAGTCTTGCCAC
Shewanella halifaxensis HAW-EB4 Shal_1533 -159 4.1 CTGTAAACAAGCCTTGCCAC
Shewanella piezotolerans WP3 swp_1652 -309 4.6 cTGTAAAcaagtCTTgcCAC
Shewanella sediminis HAW-EB3 Ssed_2928 -151 4.6 CTGTAAACAAGACTTGCCAC
Shewanella woodyi ATCC 51908 Swoo_1717 -161 4.6 CTGTAAACAAGACTTGCCAC
Position: -169
Score: 4.5
Sequence: CTGTCATGAATTGTTTACAA
Locus tag: Shew_1438
Shew_1438 -169 4.5 CTGTCATGAATTGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmgC
Ortholog function: Fumarylacetoacetase (EC 3.7.1.2)
Shewanella oneidensis MR-1 SO_1670 -323 3.8 ATGTAACAGTATCGTTCCAC
-239 4.3 ACGTAATGATTAGTTTACAG
Shewanella putrefaciens CN-32 Sputcn32_1389 -352 3.9 ATGTAACCGTATCGTTCCAC
-268 4 ACGTAATGATTAGTTTACGA
Shewanella sp W3-18-1 Sputw3181_2712 -352 3.9 ATGTAACCGTATCGTTCCAC
-268 4 ACGTAATGATTAGTTTACGA
Shewanella sp ANA-3 Shewana3_2778 -320 3.8 ATGTAACAGTATCGTTCCAC
-236 4.4 ACGTAATGATTAGTTTACAA
Shewanella sp MR-4 Shewmr4_2604 -319 3.8 ATGTAACAGTATCGTTCCAC
-235 4.4 ACGTAATGATTAGTTTACAA
Shewanella sp MR-7 Shewmr7_2671 -319 3.8 ATGTAACAGTATCGTTCCAC
-235 4.4 ACGTAATGATTAGTTTACAA
Shewanella baltica OS155 Sbal_1487 -358 3.8 ATGTAACAGTATCGTTCCAC
-274 4 ACGTAATGATTAGTTTACGA
Shewanella denitrificans OS217 Sden_2592 -228 4.1 ATGTAACGAATTAGTGCCAT
-146 4.1 TTGTACTGAAAAGTTTACAG
Shewanella frigidimarina NCIMB 400 Sfri_1331 -155 4.9 TTGTAACGAATAATTTACAA
Shewanella amazonensis SB2B Sama_2219 -234 4.3 GTGTAAAAAGAATTTGCCAG
-150 4.4 CTGTATTTAAAAGTTTACAA
Shewanella loihica PV-4 Shew_1438 -169 4.5 CTGTCATGAATTGTTTACAA
Shewanella pealeana ATCC 700345 Spea_1451 -197 4.8 GTGTATCTATAAGTTTACAC
Shewanella halifaxensis HAW-EB4 Shal_1534 -183 4.7 CTGTAAGTATAAGTTTACAA
Shewanella piezotolerans WP3 swp_1653 -179 4.8 CTGTAATTATATGTTTACAA
Shewanella sediminis HAW-EB3 Ssed_2927 -238 4 ATGTAAAAGCTTGTTGCCAC
-155 4 GTGTAACTGTTTATTTACGT
Shewanella woodyi ATCC 51908 Swoo_1718 -256 4.2 ATGTAACAAGAGATTGCCAC
-172 4.8 CTGTAATTATTTATTTACAA
Position: -157
Score: 5.1
Sequence: GTGGAAAGCAAAATTGCCAC
Locus tag: Shew_1555
Shew_1555 -157 5.1 GTGGAAAGCAAAATTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: Leucine dehydrogenase (EC 1.4.1.9)
Shewanella oneidensis MR-1 SO_2638 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella putrefaciens CN-32 Sputcn32_2238 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp W3-18-1 Sputw3181_1771 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp ANA-3 Shewana3_1742 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-4 Shewmr4_1598 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-7 Shewmr7_1673 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella baltica OS155 Sbal_2483 -134 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella denitrificans OS217 Sden_1823 -140 4.9 GTGGCAAGCAAAATTGCCAC
Shewanella frigidimarina NCIMB 400 Sfri_2265 -178 5.2 GTGGCAAGCTAAATTTCCAC
Shewanella amazonensis SB2B Sama_2067 -147 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella loihica PV-4 Shew_1555 -157 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella pealeana ATCC 700345 Spea_2543 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella halifaxensis HAW-EB4 Shal_1711 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella piezotolerans WP3 swp_1857 -158 4.8 GTGGAAAGCAGAATTGCCAC
Shewanella sediminis HAW-EB3 Ssed_1877 -156 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella woodyi ATCC 51908 Swoo_2710 -157 5.1 GTGGAAAGCAAAATTGCCAC
Position: -168
Score: 4.4
Sequence: CTGTAAATTCAGCCTGACAA
Locus tag: Shew_1667
Shew_1667 -168 4.4 CTGTAAATTCAGCCTGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ivdA
Ortholog function: 3-ketoacyl-CoA thiolase [isoleucine degradation] (EC 2.3.1.16)
Shewanella oneidensis MR-1 SO_1677 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella putrefaciens CN-32 Sputcn32_1397 -167 4.3 CTGTAAATCCTTACTGACAA
Shewanella sp W3-18-1 Sputw3181_2704 -167 4.3 CTGTAAATCCTTACTGACAA
Shewanella sp ANA-3 Shewana3_2771 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella sp MR-4 Shewmr4_2597 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella sp MR-7 Shewmr7_2664 -159 4.4 CTGTAAATCCTGACTGACAA
Shewanella baltica OS155 Sbal_1495 -162 4.3 CTGTAAATCCTTACTGACAT
Shewanella denitrificans OS217 Sden_1943 -159 4.4 GTGTAAATCTTCAGTGACAA
Shewanella frigidimarina NCIMB 400 Sfri_1338 -140 4.1 CTGTAAATCTTCACTGACAA
Shewanella amazonensis SB2B Sama_1375 -195 3.8 GTGTCAATCTCAGTTCCCGC
-173 4.6 CTGTAAATCCAGAGTGACAA
Shewanella loihica PV-4 Shew_1667 -168 4.4 CTGTAAATTCAGCCTGACAA
Shewanella pealeana ATCC 700345 Spea_2783 -231 4.5 GTGTAAATTCTATGTGACAA
Shewanella halifaxensis HAW-EB4 Shal_2878 -231 4.4 GTGTAAATCCTTTGTGACAT
Shewanella piezotolerans WP3 swp_3387 -75 3.8 TTTTAAGTTGATGTTTACAC
Shewanella sediminis HAW-EB3 Ssed_1473 -185 4.5 CTGTAAATCCTGAGTGACAT
Shewanella woodyi ATCC 51908 Swoo_3202 -173 4.7 CTGTAAATCTTGAGTGACAT
Position: -175
Score: 4.7
Sequence: TTGTAAAGCTAGCGATACAT
Locus tag: Shew_1925
Shew_1925 -175 4.7 TTGTAAAGCTAGCGATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bkdA1
Ortholog function: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Shewanella oneidensis MR-1 SO_2339 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella putrefaciens CN-32 Sputcn32_1885 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella sp W3-18-1 Sputw3181_2123 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella sp ANA-3 Shewana3_2131 -160 4.8 TTGTAAAGCATTATATACAT
Shewanella sp MR-4 Shewmr4_2028 -160 4.8 TTGTAAAGCATTATATACAT
Shewanella sp MR-7 Shewmr7_1947 -160 4.8 TTGTAAAGCATTATATACAT
Shewanella baltica OS155 Sbal_4508 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella denitrificans OS217 Sden_1786 -153 4.5 GCGTAAAGCAAATTATACAA
Shewanella frigidimarina NCIMB 400 Sfri_1935 -156 4.5 TCGTAAAGCAATATATACAT
Shewanella amazonensis SB2B Sama_1709 -150 4.3 CTGTAAAGCAATTAATACAT
Shewanella loihica PV-4 Shew_1925 -175 4.7 TTGTAAAGCTAGCGATACAT
Shewanella pealeana ATCC 700345 Spea_2246 -161 4.8 ATGTAAACCAATATATACAT
Shewanella halifaxensis HAW-EB4 Shal_2234 -161 4.8 ATGTAAACCAATATATACAT
Shewanella piezotolerans WP3 swp_2606 -162 4.8 ATGTAAACCAATATATACAT
Shewanella sediminis HAW-EB3 Ssed_2329 -172 4.4 TTGTAAAGCTAAAGATACGC
Shewanella woodyi ATCC 51908 Swoo_2278 -171 4 ATGTAAAGCTAAACATACGG
Position: -141
Score: 4
Sequence: CTGGCATGAAAATTTGCCAA
Locus tag: Shew_1951
Shew_1951 -141 4 CTGGCATGAAAATTTGCCAA
Supported by regulated orthologs from reference regulons