Propagation of SO4705 regulog to Shewanella loihica PV-4
| Source regulog: | SO4705 - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | XRE |
| Regulation mode: | repressor |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella loihica PV-4 |
| Orthologous TF(s) | Shew_2560 |
| Regulated genes | 2 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -144
Score: 6.6 Sequence: TTGTAATGAAAAAGCCGCTAGACTACAA
Locus tag: Shew_2559
|
||||
| Shew_2559 | -144 | 6.6 | TTGTAATGAAAAAGCCGCTAGACTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4706 | ||||
| Ortholog function: Malate synthase-related protein | ||||
| Shewanella loihica PV-4 | Shew_2559 | -144 | 6.6 | TTGTAATGAAAAAGCCGCTAGACTACAA |
|
Position: -65
Score: 6.6 Sequence: TTGTAGTCTAGCGGCTTTTTCATTACAA
Locus tag: Shew_2560
|
||||
| Shew_2560 | -65 | 6.6 | TTGTAGTCTAGCGGCTTTTTCATTACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4705 | ||||
| Ortholog function: transcriptional regulator, XRE family | ||||
| Shewanella oneidensis MR-1 | SO_4705 | -86 | 7.4 | TTGTAGTCTAGTGTATTTTTTACTACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3866 | -65 | 7.3 | TTGTAGTCTAGTCTTTTTTTGACTACAA |
| Shewanella sp W3-18-1 | Sputw3181_0087 | -65 | 7.3 | TTGTAGTCTAGTCTTTTTTTGACTACAA |
| Shewanella sp ANA-3 | Shewana3_4059 | -65 | 7.3 | TTGTAGTCTAGTCTTTTTTTGACTACAA |
| Shewanella sp MR-4 | Shewmr4_3851 | -65 | 7 | TTGTAGTCTAGTCTTTTTTTGGCTACAA |
| Shewanella sp MR-7 | Shewmr7_3944 | -65 | 7.3 | TTGTAGTCTAGTCTTTTTTTGACTACAA |
| Shewanella baltica OS155 | Sbal_0106 | -65 | 7.3 | TTGTAGTCTAGTCTTTTTTTGACTACAA |
| Shewanella denitrificans OS217 | Sden_0218 | -65 | 7 | TTGTAGTCTAAAACAATTTTCGCTACAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3903 | -64 | 4.8 | TTtTAGTCTAtgcTATTTTTacaaACAA |
| Shewanella amazonensis SB2B | Sama_0680 | -65 | 6.6 | TTTTAGTCTATGTTATTTTTTACTACAA |
| Shewanella loihica PV-4 | Shew_2560 | -65 | 6.6 | TTGTAGTCTAGCGGCTTTTTCATTACAA |
| Shewanella pealeana ATCC 700345 | Spea_2004 | -65 | 7 | TTGTAGTCTAGTGTAATTTTCATTACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2297 | -65 | 6.9 | TTGTAGTCTAGTGTAAATTTTATTACAA |
| Shewanella piezotolerans WP3 | swp_2678 | -65 | 5.7 | TTGTAGTCTAGTGTAAAAACCGCTACAA |
| Shewanella sediminis HAW-EB3 | Ssed_1608 | -65 | 7.1 | TTGTAGTCTAGCGAATTTTTTACTACAA |
| Shewanella woodyi ATCC 51908 | Swoo_3044 | -84 | 6.8 | TTGTAGTCTAGCTAATTTTTCATTACAA |