Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SO4705 - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: XRE
Regulation mode: repressor
Biological process:
Effector:
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 32 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 2 2
Shewanella putrefaciens CN-32 2 2
Shewanella sp W3-18-1 2 2
Shewanella sp ANA-3 2 2
Shewanella sp MR-4 2 2
Shewanella sp MR-7 2 2
Shewanella baltica OS155 2 2
Shewanella denitrificans OS217 2 2
Shewanella frigidimarina NCIMB 400 2 2
Shewanella amazonensis SB2B 2 2
Shewanella loihica PV-4 2 2
Shewanella pealeana ATCC 700345 2 2
Shewanella halifaxensis HAW-EB4 2 2
Shewanella piezotolerans WP3 2 2
Shewanella sediminis HAW-EB3 2 2
Shewanella woodyi ATCC 51908 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
SO4706
*
Shewanella oneidensis MR-1

Site:
position = -174
score = 7.39987
sequence = TTGTAGTAAAAAATACACTAGACTACAA

Gene: SO_4706: Malate synthase-related protein
*
Shewanella putrefaciens CN-32

Site:
position = -216
score = 7.31123
sequence = TTGTAGTCAAAAAAAGACTAGACTACAA

Gene: Sputcn32_3867: Malate synthase-related protein
*
Shewanella sp W3-18-1

Site:
position = -216
score = 7.31123
sequence = TTGTAGTCAAAAAAAGACTAGACTACAA

Gene: Sputw3181_0086: Malate synthase-related protein
*
Shewanella sp ANA-3

Site:
position = -171
score = 7.31123
sequence = TTGTAGTCAAAAAAAGACTAGACTACAA

Gene: Shewana3_4060: Malate synthase-related protein
*
Shewanella sp MR-4

Site:
position = -172
score = 7.04315
sequence = TTGTAGCCAAAAAAAGACTAGACTACAA

Gene: Shewmr4_3852: Malate synthase-related protein
*
Shewanella sp MR-7

Site:
position = -171
score = 7.31123
sequence = TTGTAGTCAAAAAAAGACTAGACTACAA

Gene: Shewmr7_3945: Malate synthase-related protein
*
Shewanella baltica OS155

Site:
position = -214
score = 7.31123
sequence = TTGTAGTCAAAAAAAGACTAGACTACAA

Gene: Sbal_0105: Malate synthase-related protein
*
Shewanella denitrificans OS217

Site:
position = -128
score = 6.97245
sequence = TTGTAGCGAAAATTGTTTTAGACTACAA

Gene: Sden_0217: Malate synthase-related protein
*
Shewanella frigidimarina NCIMB 400

Site:
position = -111
score = 4.78716
sequence = TTGTttgtAAAAATAgcaTAGACTAaAA

Gene: Sfri_3904: Malate synthase-related protein
*
Shewanella amazonensis SB2B

Site:
position = -119
score = 6.62375
sequence = TTGTAGTAAAAAATAACATAGACTAAAA

Gene: Sama_0681: Malate synthase-related protein
*
Shewanella loihica PV-4

Site:
position = -144
score = 6.60647
sequence = TTGTAATGAAAAAGCCGCTAGACTACAA

Gene: Shew_2559: Malate synthase-related protein
*
Shewanella pealeana ATCC 700345

Site:
position = -112
score = 7.0157
sequence = TTGTAATGAAAATTACACTAGACTACAA

Gene: Spea_2005: Malate synthase-related protein
*
Shewanella halifaxensis HAW-EB4

Site:
position = -113
score = 6.9014
sequence = TTGTAATAAAATTTACACTAGACTACAA

Gene: Shal_2296: Malate synthase-related protein
*
Shewanella piezotolerans WP3

Site:
position = -120
score = 5.6935
sequence = TTGTAGCGGTTTTTACACTAGACTACAA

Gene: swp_2677: Malate synthase-related protein
*
Shewanella sediminis HAW-EB3

Site:
position = -170
score = 7.14345
sequence = TTGTAGTAAAAAATTCGCTAGACTACAA

Gene: Ssed_1609: Malate synthase-related protein
*
Shewanella woodyi ATCC 51908

Site:
position = -137
score = 6.83728
sequence = TTGTAATGAAAAATTAGCTAGACTACAA

Gene: Swoo_3043: Malate synthase-related protein
Malate synthase-related protein
 
CRON 2.
SO4705
*
Shewanella oneidensis MR-1

Site:
position = -86
score = 7.39987
sequence = TTGTAGTCTAGTGTATTTTTTACTACAA

Gene: SO_4705: transcriptional regulator, XRE family
*
Shewanella putrefaciens CN-32

Site:
position = -65
score = 7.31123
sequence = TTGTAGTCTAGTCTTTTTTTGACTACAA

Gene: Sputcn32_3866: transcriptional regulator, XRE family
*
Shewanella sp W3-18-1

Site:
position = -65
score = 7.31123
sequence = TTGTAGTCTAGTCTTTTTTTGACTACAA

Gene: Sputw3181_0087: transcriptional regulator, XRE family
*
Shewanella sp ANA-3

Site:
position = -65
score = 7.31123
sequence = TTGTAGTCTAGTCTTTTTTTGACTACAA

Gene: Shewana3_4059: transcriptional regulator, XRE family
*
Shewanella sp MR-4

Site:
position = -65
score = 7.04315
sequence = TTGTAGTCTAGTCTTTTTTTGGCTACAA

Gene: Shewmr4_3851: transcriptional regulator, XRE family
*
Shewanella sp MR-7

Site:
position = -65
score = 7.31123
sequence = TTGTAGTCTAGTCTTTTTTTGACTACAA

Gene: Shewmr7_3944: transcriptional regulator, XRE family
*
Shewanella baltica OS155

Site:
position = -65
score = 7.31123
sequence = TTGTAGTCTAGTCTTTTTTTGACTACAA

Gene: Sbal_0106: transcriptional regulator, XRE family
*
Shewanella denitrificans OS217

Site:
position = -65
score = 6.97245
sequence = TTGTAGTCTAAAACAATTTTCGCTACAA

Gene: Sden_0218: transcriptional regulator, XRE family
*
Shewanella frigidimarina NCIMB 400

Site:
position = -64
score = 4.78716
sequence = TTtTAGTCTAtgcTATTTTTacaaACAA

Gene: Sfri_3903: transcriptional regulator, XRE family
*
Shewanella amazonensis SB2B

Site:
position = -65
score = 6.62375
sequence = TTTTAGTCTATGTTATTTTTTACTACAA

Gene: Sama_0680: transcriptional regulator, XRE family
*
Shewanella loihica PV-4

Site:
position = -65
score = 6.60647
sequence = TTGTAGTCTAGCGGCTTTTTCATTACAA

Gene: Shew_2560: transcriptional regulator, XRE family
*
Shewanella pealeana ATCC 700345

Site:
position = -65
score = 7.0157
sequence = TTGTAGTCTAGTGTAATTTTCATTACAA

Gene: Spea_2004: transcriptional regulator, XRE family
*
Shewanella halifaxensis HAW-EB4

Site:
position = -65
score = 6.9014
sequence = TTGTAGTCTAGTGTAAATTTTATTACAA

Gene: Shal_2297: transcriptional regulator, XRE family
*
Shewanella piezotolerans WP3

Site:
position = -65
score = 5.6935
sequence = TTGTAGTCTAGTGTAAAAACCGCTACAA

Gene: swp_2678: transcriptional regulator, XRE family
*
Shewanella sediminis HAW-EB3

Site:
position = -65
score = 7.14345
sequence = TTGTAGTCTAGCGAATTTTTTACTACAA

Gene: Ssed_1608: transcriptional regulator, XRE family
*
Shewanella woodyi ATCC 51908

Site:
position = -84
score = 6.83728
sequence = TTGTAGTCTAGCTAATTTTTCATTACAA

Gene: Swoo_3044: transcriptional regulator, XRE family
transcriptional regulator, XRE family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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