Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of HexR regulog to Shewanella loihica PV-4

Reference regulog properties
Source regulog: HexR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella loihica PV-4
Orthologous TF(s) Shew_2049
Regulated genes 16
Built upon 316 sites [see more]
Predicted regulatory interactions in Shewanella loihica PV-4
Locus tag Position Score Sequence
Position: -105
Score: 4.6
Sequence: CTGTAATTTTTTTTCAT
Locus tag: Shew_1089
Shew_1089 -105 4.6 CTGTAATTTTTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tal
Ortholog function: transaldolase
Shewanella oneidensis MR-1 SO_3546 -104 5.3 TTGTAATTTTTTTACAT
Shewanella putrefaciens CN-32 Sputcn32_1049 -103 5.3 TTGTAATTTTTTTACAT
Shewanella sp W3-18-1 Sputw3181_3116 -103 5.3 TTGTAATTTTTTTACAT
Shewanella sp ANA-3 Shewana3_3147 -104 5.3 TTGTAATTTTTTTACAT
Shewanella sp MR-4 Shewmr4_2967 -104 5.3 TTGTAATTTTTTTACAT
Shewanella sp MR-7 Shewmr7_3049 -104 5.3 TTGTAATTTTTTTACAT
Shewanella baltica OS155 Sbal_1044 -103 5.3 TTGTAATTTTTTTACAT
Shewanella denitrificans OS217 Sden_2734 -94 5 TGGTAATTTATTTACAA
Shewanella frigidimarina NCIMB 400 Sfri_2900 -96 5 TCGTAATTTTTTTACAA
Shewanella amazonensis SB2B Sama_0913 -105 4.8 TTGTAATTTTTTTTCAT
Shewanella loihica PV-4 Shew_1089 -105 4.6 CTGTAATTTTTTTTCAT
Shewanella pealeana ATCC 700345 Spea_1074 -160 4.3 ACGTAGTTAGATTACAA
-109 4.4 GTGTAATTTTTTTTCAT
Shewanella halifaxensis HAW-EB4 Shal_1122 -108 4.4 GTGTAATTTTTTTTCAT
Shewanella piezotolerans WP3 swp_3741 -157 4.2 TGGTAGCAATATTACCA
-106 4.6 CTGTAATTTTTTTTCAT
Shewanella sediminis HAW-EB3 Ssed_1185 -105 4.6 CTGTAATTTTTTTTCAT
Shewanella woodyi ATCC 51908 Swoo_1280 -104 4.6 CTGTAATTTTTTTTCAT
Position: -75
Score: 5.8
Sequence: TTGTAATAAAATTACAA
Locus tag: Shew_1091
Shew_1091 -75 5.8 TTGTAATAAAATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: phk
Ortholog function: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Shewanella oneidensis MR-1 SO_3542 -73 5.4 TTGTAAGAAAATTACAA
Shewanella putrefaciens CN-32 Sputcn32_1051 -73 5.5 TTGTAATAAAACTACAA
Shewanella sp W3-18-1 Sputw3181_3114 -73 5.5 TTGTAATAAAACTACAA
Shewanella sp ANA-3 Shewana3_3145 -73 5.4 TTGTAAGAAAATTACAA
Shewanella sp MR-4 Shewmr4_2965 -73 5.4 TTGTAAGAAAATTACAA
Shewanella sp MR-7 Shewmr7_3047 -73 5.4 TTGTAAGAAAATTACAA
Shewanella baltica OS155 Sbal_1046 -74 5.5 TTGTAATAAAACTACAA
Shewanella denitrificans OS217 Sden_2731 -72 5.3 TCGTAATTAAATTACAA
Shewanella frigidimarina NCIMB 400 Sfri_2898 -167 4.5 TCGTTATTAAATTTCAA
-73 5.6 TTGTAATTAAATTACAG
Shewanella amazonensis SB2B Sama_0915 -77 5.5 TTGTAATAAATTTACAA
Shewanella loihica PV-4 Shew_1091 -75 5.8 TTGTAATAAAATTACAA
Shewanella pealeana ATCC 700345 Spea_1076 -74 5.3 TCGTAATAAAATTACAA
Shewanella halifaxensis HAW-EB4 Shal_1124 -74 5.8 TTGTAATAAAATTACAA
Shewanella piezotolerans WP3 swp_3738 -137 4.6 ATCTAGTTTTACTACAT
-74 5.8 TTGTAATAAAATTACAA
Shewanella sediminis HAW-EB3 Ssed_1186 -75 5.8 TTGTAATAAAATTACAA
Shewanella woodyi ATCC 51908 Swoo_1282 -75 5.8 TTGTAATAAAATTACAA
Position: -168
Score: 4.8
Sequence: TTGTCATAAATTTACAA
Locus tag: Shew_1166
Shew_1166 -168 4.8 TTGTCATAAATTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhB
Ortholog function: alcohol dehydrogenase II
Shewanella putrefaciens CN-32 Sputcn32_1244 -59 4.4 TGGTAGTTTAGTAACAA
Shewanella sp W3-18-1 Sputw3181_2860 -59 4.4 TGGTAGTTTAGTAACAA
Shewanella frigidimarina NCIMB 400 Sfri_2798 -253 4.2 CGGTAATATTATTTGAA
-127 4 TGGTAATAAAACAACCT
Shewanella loihica PV-4 Shew_1166 -168 4.8 TTGTCATAAATTTACAA
Shewanella pealeana ATCC 700345 Spea_1152 -167 5 ATGTCATAAAATTACAA
-61 4.2 TGGTACTTTAATTACCA
Shewanella halifaxensis HAW-EB4 Shal_1196 -166 4.2 ACGTCATAAAACTACAA
Shewanella piezotolerans WP3 swp_1311 -165 4.5 ATGTCGTAAAATTACAG
-60 4.2 TGGTACTTTAATTACCA
Shewanella sediminis HAW-EB3 Ssed_1258 -163 4.1 TGGTCATAAATTTACAG
Position: -114
Score: 5.5
Sequence: TAGTAATAAAATTACAA
Locus tag: Shew_1549
Shew_1549 -114 5.5 TAGTAATAAAATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsA
Ortholog function: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Shewanella oneidensis MR-1 SO_2644 -113 5.5 TAGTAATAAAATTACAA
Shewanella putrefaciens CN-32 Sputcn32_2243 -112 5.5 TAGTAATAAAATTACAA
Shewanella sp W3-18-1 Sputw3181_1765 -112 5.5 TAGTAATAAAATTACAA
Shewanella sp ANA-3 Shewana3_1736 -112 5.5 TAGTAATAAAATTACAA
Shewanella sp MR-4 Shewmr4_1592 -112 5.5 TAGTAATAAAATTACAA
Shewanella baltica OS155 Sbal_2488 -112 5.5 TAGTAATAAAATTACAA
Shewanella denitrificans OS217 Sden_2009 -112 5.5 TAGTAATAAAATTACAA
Shewanella frigidimarina NCIMB 400 Sfri_2297 -57 5.5 TAGTAATAAAATTACAA
Shewanella amazonensis SB2B Sama_2072 -112 5.5 TAGTAATAAAATTACAA
Shewanella loihica PV-4 Shew_1549 -114 5.5 TAGTAATAAAATTACAA
Shewanella pealeana ATCC 700345 Spea_2549 -114 5.5 TAGTAATAAAATTACAA
Shewanella halifaxensis HAW-EB4 Shal_1705 -114 5.5 TAGTAATAAAATTACAA
Shewanella piezotolerans WP3 swp_1851 -150 5.5 TAGTAATAAAATTACAA
Shewanella sediminis HAW-EB3 Ssed_1871 -114 5.5 TAGTAATAAAATTACAA
Shewanella woodyi ATCC 51908 Swoo_2715 -114 5.5 TAGTAATAAAATTACAA
Position: -57
Score: 4.3
Sequence: TGGTAACTTAGTTACTA
Locus tag: Shew_1610
Shew_1610 -57 4.3 TGGTAACTTAGTTACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cdd
Ortholog function: cytidine deaminase
Shewanella oneidensis MR-1 SO_2791 -57 4.9 CTGTAACAAAATTACTA
Shewanella putrefaciens CN-32 Sputcn32_1568 -57 5.1 TTGTAACAAAATTACTA
Shewanella sp W3-18-1 Sputw3181_2531 -57 5.1 TTGTAACAAAATTACTA
Shewanella sp ANA-3 Shewana3_2573 -57 4.4 CCGTAACAAAATTACTA
Shewanella sp MR-4 Shewmr4_2411 -57 4.4 CCGTAACAAAATTACTA
Shewanella sp MR-7 Shewmr7_2481 -57 4.9 CTGTAACAAAATTACTA
Shewanella baltica OS155 Sbal_1694 -57 5.1 TTGTAACAAAATTACTA
Shewanella denitrificans OS217 Sden_2288 -150 4.2 ATGTAATCAAACTAGAG
Shewanella loihica PV-4 Shew_1610 -57 4.3 TGGTAACTTAGTTACTA
Shewanella piezotolerans WP3 swp_3037 -57 4.3 ATGTAATAAGCTTACTA
Position: -136
Score: 5.1
Sequence: ATGTTATTTTATTACAT
Locus tag: Shew_1910
Shew_1910 -136 5.1 ATGTTATTTTATTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1)
Shewanella putrefaciens CN-32 Sputcn32_1811 -135 5.5 TTGTAGTTTTATTACAA
Shewanella sp W3-18-1 Sputw3181_2214 -135 5.5 TTGTAGTTTTATTACAA
Shewanella sp ANA-3 Shewana3_1788 -134 4.8 CTGTATTTTTATTACAT
Shewanella sp MR-4 Shewmr4_1683 -134 4.8 CTGTATTTTTATTACAT
Shewanella sp MR-7 Shewmr7_1758 -134 4.8 CTGTATTTTTATTACAT
Shewanella baltica OS155 Sbal_1922 -135 5 GTGTAGTTTTATTACAT
Shewanella denitrificans OS217 Sden_2000 -136 5.4 CTGTAATTAAATTACAG
Shewanella frigidimarina NCIMB 400 Sfri_1898 -131 5.4 CTGTAATAAAATTACAT
-67 4.2 TTGTAATTTTATTTACA
Shewanella amazonensis SB2B Sama_1693 -142 4.3 CTGTTGTTTTATTTCAG
Shewanella loihica PV-4 Shew_1910 -136 5.1 ATGTTATTTTATTACAT
-72 4.1 GTGTAATTTTCCTTCAT
Shewanella pealeana ATCC 700345 Spea_2044 -153 4.6 TGGTTATAAAATTACAC
Shewanella halifaxensis HAW-EB4 Shal_2250 -153 4.8 TGGTTATAAAATTACAG
-89 4.2 GTGTAATTTTTCTTCAT
Shewanella piezotolerans WP3 swp_2623 -150 4.9 TAGTTATTTTATTACAG
Shewanella sediminis HAW-EB3 Ssed_2349 -137 4.8 TCGTTATTTTATTACAT
Shewanella woodyi ATCC 51908 Swoo_2241 -146 4.6 ACGTTATTTAATTACAT
Position: -181
Score: 4.9
Sequence: ATCTAATAAAATTACAC
Locus tag: Shew_2000
Shew_2000 -181 4.9 ATCTAATAAAATTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gapB
Ortholog function: NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13)
Shewanella oneidensis MR-1 SO_2347 -182 5 CTCTAATAAAATTACAG
Shewanella putrefaciens CN-32 Sputcn32_1891 -181 5.2 TTCTAATAAAATTACAT
Shewanella sp W3-18-1 Sputw3181_2117 -181 5.2 TTCTAATAAAATTACAT
Shewanella sp ANA-3 Shewana3_2122 -183 5 CTCTAATAAAATTACAG
Shewanella sp MR-4 Shewmr4_2021 -183 5 CTCTAATAAAATTACAG
Shewanella sp MR-7 Shewmr7_1954 -183 5 CTCTAATAAAATTACAG
Shewanella baltica OS155 Sbal_2216 -181 5.2 TTCTAATAAAATTACAG
Shewanella denitrificans OS217 Sden_1793 -181 5.1 ATCTAATAAAATTACAT
Shewanella frigidimarina NCIMB 400 Sfri_1942 -178 4.6 GTCTAATAAAATTACAC
Shewanella amazonensis SB2B Sama_1806 -181 5.2 CTCTAATAAAATTACAA
Shewanella loihica PV-4 Shew_2000 -181 4.9 ATCTAATAAAATTACAC
Shewanella pealeana ATCC 700345 Spea_2106 -182 5 ATCTAATAAAATTACAG
Shewanella halifaxensis HAW-EB4 Shal_2078 -182 5.2 TTCTAATAAAATTACAT
Shewanella piezotolerans WP3 swp_2537 -347 5.1 ATCTAATTAAATTACAT
Shewanella sediminis HAW-EB3 Ssed_2226 -182 4.9 TGCTAATAAAATTACAA
Shewanella woodyi ATCC 51908 Swoo_2395 -179 4.9 TGCTAATAAAATTACAA
Position: -175
Score: 4.3
Sequence: TAGTATTTTTTTTACAG
Position: -50
Score: 4.6
Sequence: TGGTAATTTTACTACCA
Locus tag: Shew_2002
Shew_2002 -175 4.3 TAGTATTTTTTTTACAG
-50 4.6 TGGTAATTTTACTACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gapA2
Ortholog function: glyceraldehyde-3-phosphate dehydrogenase, type I
Shewanella oneidensis MR-1 SO_2345 -49 4.6 TGGTAATTTTACTACCA
Shewanella putrefaciens CN-32 Sputcn32_1889 -49 4.6 TGGTAATTTTACTACCA
Shewanella sp W3-18-1 Sputw3181_2119 -49 4.6 TGGTAATTTTACTACCA
Shewanella sp ANA-3 Shewana3_2124 -49 4.6 TGGTAATTTTACTACCA
Shewanella sp MR-4 Shewmr4_2023 -49 4.6 TGGTAATTTTACTACCA
Shewanella sp MR-7 Shewmr7_1952 -49 4.6 TGGTAATTTTACTACCA
Shewanella baltica OS155 Sbal_2218 -49 4.6 TGGTAATTTTACTACCA
Shewanella denitrificans OS217 Sden_1791 -63 4.4 TGGTAATTTTACAACTA
Shewanella frigidimarina NCIMB 400 Sfri_1940 -136 4.7 ATGTAAAAAAAATACAA
-62 4.2 TGGTAATTTTACAACCA
Shewanella amazonensis SB2B Sama_1808 -122 4.4 ATGTAAAAATATAACGA
-48 4.6 TGGTAATTTTACTACCA
Shewanella loihica PV-4 Shew_2002 -175 4.3 TAGTATTTTTTTTACAG
-50 4.6 TGGTAATTTTACTACCA
Shewanella pealeana ATCC 700345 Spea_2104 -126 4.6 ATGTAAAAAAATTACCT
-51 4.2 TGGTAATTTTACAACCA
Shewanella halifaxensis HAW-EB4 Shal_2076 -128 4.4 GTGTAAAAAAATTACCG
-53 4.6 TGGTAATTTTACTACCA
Shewanella piezotolerans WP3 swp_2533 -126 4.6 ATGTAAAAAAATTACCT
-51 4.6 TGGTAATTTTACTACCA
Shewanella sediminis HAW-EB3 Ssed_2228 -51 4.6 TGGTAATTTTACTACCA
Shewanella woodyi ATCC 51908 Swoo_2393 -51 4.6 TGGTAATTTTACTACCA
Position: -76
Score: 5
Sequence: CTGTTGTTATATTACAA
Locus tag: Shew_2048
Shew_2048 -76 5 CTGTTGTTATATTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: zwf
Ortholog function: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Shewanella oneidensis MR-1 SO_2489 -78 5 CTGTTGTTATATTACAA
Shewanella putrefaciens CN-32 Sputcn32_1866 -78 5 CTGTTGTTATATTACAA
Shewanella sp W3-18-1 Sputw3181_2142 -78 5 CTGTTGTTATATTACAA
Shewanella sp ANA-3 Shewana3_2151 -79 5 CTGTTGTTATATTACAA
Shewanella sp MR-4 Shewmr4_2046 -79 5 CTGTTGTTATATTACAA
Shewanella sp MR-7 Shewmr7_1929 -79 5 CTGTTGTTATATTACAA
Shewanella baltica OS155 Sbal_2241 -79 5 CTGTTGTTATATTACAA
Shewanella denitrificans OS217 Sden_2079 -260 4.2 TAGTTGTTTTATTACCT
-88 5 CTGTTGTTATATTACAA
Shewanella frigidimarina NCIMB 400 Sfri_1892 -232 4.5 CTGTAGTTATTTTTCAA
-88 5 CTGTTGTTATATTACAA
Shewanella amazonensis SB2B Sama_1812 -78 5 CTGTTGTTATATTACAA
Shewanella loihica PV-4 Shew_2048 -174 4.8 TAGTAATTTAATCACAA
-76 5 CTGTTGTTATATTACAA
Shewanella pealeana ATCC 700345 Spea_2335 -54 5 CTGTTGTTATATTACAA
Shewanella halifaxensis HAW-EB4 Shal_1949 -175 4.8 TAGTAATTTTATCACAA
-78 5 CTGTTGTTATATTACAA
Shewanella piezotolerans WP3 swp_2390 -175 4.3 TAGTAATTTTATCACGA
-78 5 CTGTTGTTATATTACAA
Shewanella sediminis HAW-EB3 Ssed_2070 -176 4.3 TAGTAATTTAATCACGA
-78 5 CTGTTGTTATATTACAA
Shewanella woodyi ATCC 51908 Swoo_2539 -175 4.8 TAGTAATTTAATCACAA
-77 5 CTGTTGTTATATTACAA
Position: -249
Score: 5
Sequence: TTGTAATATAACAACAG
Locus tag: Shew_2049
Shew_2049 -249 5 TTGTAATATAACAACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: hexR
Ortholog function: Central carbohydrate metabolism transcription regulator HexR, RpiR family
Shewanella oneidensis MR-1 SO_2490 -249 5 TTGTAATATAACAACAG
Shewanella putrefaciens CN-32 Sputcn32_1865 -252 4.8 TTGTTGTAATATAACAA
-249 5 TTGTAATATAACAACAG
Shewanella sp W3-18-1 Sputw3181_2143 -249 5 TTGTAATATAACAACAG
Shewanella sp ANA-3 Shewana3_2152 -250 5 TTGTAATATAACAACAG
Shewanella sp MR-4 Shewmr4_2047 -250 5 TTGTAATATAACAACAG
Shewanella sp MR-7 Shewmr7_1928 -250 5 TTGTAATATAACAACAG
Shewanella baltica OS155 Sbal_2242 -250 5 TTGTAATATAACAACAG
Shewanella denitrificans OS217 Sden_2080 -249 5 TTGTAATATAACAACAG
Shewanella frigidimarina NCIMB 400 Sfri_1891 -266 5 TTGTAATATAACAACAG
-122 4.5 TTGAAAAATAACTACAG
-54 4.6 ATGATATAAAATTACAT
Shewanella amazonensis SB2B Sama_1813 -251 5 TTGTAATATAACAACAG
Shewanella loihica PV-4 Shew_2049 -249 5 TTGTAATATAACAACAG
-151 4.8 TTGTGATTAAATTACTA
Shewanella pealeana ATCC 700345 Spea_2336 -254 5 TTGTAATATAACAACAG
-157 4.3 TCGTGATAAAATTACTA
-40 4.5 ATATAATAAAACTACAT
Shewanella halifaxensis HAW-EB4 Shal_1948 -252 5 TTGTAATATAACAACAG
-155 4.8 TTGTGATAAAATTACTA
Shewanella piezotolerans WP3 swp_2389 -252 5 TTGTAATATAACAACAG
-155 4.3 TCGTGATAAAATTACTA
-40 4.5 ATATAATAAAACTACAT
Shewanella sediminis HAW-EB3 Ssed_2069 -248 5 TTGTAATATAACAACAG
-150 4.3 TCGTGATTAAATTACTA
Shewanella woodyi ATCC 51908 Swoo_2540 -248 5 TTGTAATATAACAACAG
-150 4.8 TTGTGATTAAATTACTA
Position: -75
Score: 5.1
Sequence: TTGTAATTTTCCTACAA
Locus tag: Shew_2050
Shew_2050 -75 5.1 TTGTAATTTTCCTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykA
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Shewanella oneidensis MR-1 SO_2491 -76 5 TTGTAACTTTACTACAT
Shewanella putrefaciens CN-32 Sputcn32_1864 -75 5 TTGTAACTTTACTACAT
Shewanella sp W3-18-1 Sputw3181_2144 -75 5 TTGTAACTTTACTACAT
Shewanella sp ANA-3 Shewana3_2153 -76 5 TTGTAACTTTACTACAT
Shewanella sp MR-4 Shewmr4_2048 -75 5 TTGTAACTTTACTACAT
Shewanella sp MR-7 Shewmr7_1927 -75 5 TTGTAACTTTACTACAT
Shewanella baltica OS155 Sbal_2243 -77 5 TTGTAACTTTACTACAT
Shewanella denitrificans OS217 Sden_2081 -163 5 TTGTAACTTTACTACAT
Shewanella frigidimarina NCIMB 400 Sfri_1890 -134 4.5 TGGTAACTTTACTACAT
Shewanella amazonensis SB2B Sama_1814 -77 4.6 TTGTAACTTTCCTACAT
Shewanella loihica PV-4 Shew_2050 -75 5.1 TTGTAATTTTCCTACAA
Shewanella pealeana ATCC 700345 Spea_2337 -76 4.7 TCGTAAATTTACTACAA
Shewanella halifaxensis HAW-EB4 Shal_1947 -76 4.7 TCGTAATTTTACTACAC
Shewanella piezotolerans WP3 swp_2388 -76 4.9 TCGTAATTTTACTACAT
Shewanella sediminis HAW-EB3 Ssed_2068 -76 5.1 TTGTAATTTTCCTACAA
Shewanella woodyi ATCC 51908 Swoo_2541 -76 5.1 TTGTAATTTTCCTACAA
Position: -172
Score: 4.6
Sequence: TAGTAATTAACTTACCA
Locus tag: Shew_2561
Shew_2561 -172 4.6 TAGTAATTAACTTACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gnd
Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Shewanella oneidensis MR-1 SO_1902 -82 5 TGGTAATTAAGTTACAA
Shewanella putrefaciens CN-32 Sputcn32_1723 -82 5 TGGTAATTAAGTTACAA
Shewanella sp W3-18-1 Sputw3181_2302 -82 5 TGGTAATTAAGTTACAA
Shewanella sp ANA-3 Shewana3_1677 -82 5 TGGTAATTAAGTTACAA
Shewanella sp MR-4 Shewmr4_1609 -82 5 TGGTAATTAAGTTACAA
Shewanella sp MR-7 Shewmr7_1684 -82 5 TGGTAATTAAGTTACAA
Shewanella baltica OS155 Sbal_2824 -82 5 TGGTAATTAAGTTACAA
Shewanella frigidimarina NCIMB 400 Sfri_2724 -90 5 TGGTAATTTAGTTACAA
Shewanella amazonensis SB2B Sama_1365 -74 4.2 CTGTAATTCAGTTACCA
Shewanella loihica PV-4 Shew_2561 -172 4.6 TAGTAATTAACTTACCA
Shewanella pealeana ATCC 700345 Spea_2794 -127 4.6 TAGTAATTAAGTTACCA
Shewanella halifaxensis HAW-EB4 Shal_2899 -134 4.6 TAGTAATTAAGTTACCA
Shewanella piezotolerans WP3 swp_3432 -177 4.6 TAGTAATTTAGTTACCA
Shewanella woodyi ATCC 51908 Swoo_3220 -239 4.6 TAGTAATTAACTTACCA
Position: -171
Score: 5
Sequence: TTGTTATAAAACTACAT
Position: -99
Score: 4.6
Sequence: CTGTAGCTAAGTTACAA
Locus tag: Shew_2709
Shew_2709 -171 5 TTGTTATAAAACTACAT
-99 4.6 CTGTAGCTAAGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nqrA
Ortholog function: NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit
Shewanella oneidensis MR-1 SO_0902 -181 5 TTGTTATAAAACTACAT
Shewanella putrefaciens CN-32 Sputcn32_0849 -182 5 TTGTTATAAAACTACAT
Shewanella sp W3-18-1 Sputw3181_3324 -182 5 TTGTTATAAAACTACAT
Shewanella sp ANA-3 Shewana3_3378 -181 5 TTGTTATAAAACTACAT
Shewanella sp MR-4 Shewmr4_0748 -181 5 TTGTTATAAAACTACAT
Shewanella sp MR-7 Shewmr7_3272 -181 5 TTGTTATAAAACTACAT
Shewanella baltica OS155 Sbal_0754 -182 5 TTGTTATAAAACTACAT
Shewanella frigidimarina NCIMB 400 Sfri_3211 -67 4 TAGTTACTATATTAGTA
Shewanella amazonensis SB2B Sama_2981 -180 4.6 ATGTAACTTTATGACAA
-109 4.9 TTGTAGTTAAATTTCAT
Shewanella loihica PV-4 Shew_2709 -171 5 TTGTTATAAAACTACAT
-99 4.6 CTGTAGCTAAGTTACAA
Shewanella pealeana ATCC 700345 Spea_1573 -108 4.7 TTGTAGGTAACTTACAA
Shewanella halifaxensis HAW-EB4 Shal_1644 -108 4.4 TTGTTGGTAACTTACAA
Shewanella piezotolerans WP3 swp_2889 -178 4.5 TCGTTGTAAAATTACAT
-96 4.4 TTGTATGTAAGTTACAA
Shewanella sediminis HAW-EB3 Ssed_3582 -178 5 TTGTTATAAAACTACAT
-106 4.6 ATGTTACTAAGTTACAA
Position: -85
Score: 4.6
Sequence: TCGTAATTAAATTACGG
Locus tag: Shew_2814
Shew_2814 -85 4.6 TCGTAATTAAATTACGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoA
Ortholog function: Thymidine phosphorylase (EC 2.4.2.4)
Shewanella oneidensis MR-1 SO_1218 -85 4.9 TTGTAATATTGCTACAG
Shewanella putrefaciens CN-32 Sputcn32_2821 -86 4.9 TTGTAATATTGCTACAG
Shewanella sp W3-18-1 Sputw3181_1190 -86 4.9 TTGTAATATTGCTACAG
Shewanella sp ANA-3 Shewana3_1042 -85 4.9 TTGTAATATTGCTACAG
Shewanella sp MR-4 Shewmr4_1038 -85 4.9 TTGTAATATTGCTACAG
Shewanella sp MR-7 Shewmr7_1103 -85 4.9 TTGTAATATTGCTACAG
Shewanella baltica OS155 Sbal_3226 -86 4.9 TTGTAATATTGCTACAG
Shewanella amazonensis SB2B Sama_0974 -85 5 CTGTAATATTTTTACAG
Shewanella loihica PV-4 Shew_2814 -85 4.6 TCGTAATTAAATTACGG
Shewanella pealeana ATCC 700345 Spea_3047 -94 4.7 ATGTAACAATATTACGA
Shewanella halifaxensis HAW-EB4 Shal_3135 -94 4.5 ATGTAACAATATTACGG
Shewanella piezotolerans WP3 swp_1230 -103 4 CCGTTATTATGTAACAA
-95 4.5 ATGTAACAATATTACGG
Shewanella sediminis HAW-EB3 Ssed_3377 -85 5.2 TTGTAATTAAATTACGT
Shewanella woodyi ATCC 51908 Swoo_3548 -108 4.9 ATGTAGTAAATTTACAT
Position: -125
Score: 4.6
Sequence: TTGAAATAAAACTTCAA
Locus tag: Shew_2817
Shew_2817 -125 4.6 TTGAAATAAAACTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC
Ortholog function: nucleoside transporter, NupC family
Shewanella oneidensis MR-1 SO_1214 -125 4.4 TTGAAATTAAACTCCAA
Shewanella putrefaciens CN-32 Sputcn32_2824 -125 4.4 TTGAAATTAAACTCCAA
Shewanella sp W3-18-1 Sputw3181_1187 -125 4.4 TTGAAATTAAACTCCAA
Shewanella sp ANA-3 Shewana3_1039 -125 4.4 TTGAAATTAAACTCCAA
Shewanella sp MR-4 Shewmr4_1035 -125 4.4 TTGAAATTAAACTCCAA
Shewanella sp MR-7 Shewmr7_1100 -125 4.4 TTGAAATTAAACTCCAA
Shewanella baltica OS155 Sbal_3229 -125 4.4 TTGAAATTAAACTCCAA
Shewanella denitrificans OS217 Sden_1023 -148 4.2 TTGCAATTATTTTTCAT
Shewanella amazonensis SB2B Sama_0971 -125 4.3 TTGAAATTTAAGTTCAA
Shewanella loihica PV-4 Shew_2817 -125 4.6 TTGAAATAAAACTTCAA
Shewanella piezotolerans WP3 swp_1227 -125 4.6 TTGAAATAAAACTTCAA
Shewanella woodyi ATCC 51908 Swoo_3551 -124 4.4 CTGAAATTAAACTTCAA
Position: -240
Score: 5.2
Sequence: ATGTAGTAAAATTACAG
Position: -188
Score: 5.4
Sequence: TTGTAATAAAACTACAT
Locus tag: Shew_2850
Shew_2850 -240 5.2 ATGTAGTAAAATTACAG
-188 5.4 TTGTAATAAAACTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1118
Ortholog function: hypothetical protein
Shewanella putrefaciens CN-32 Sputcn32_0956 -176 5.3 GTGTAATTTAATTACAT
-124 5.5 TTGTAATAAAACTACAA
Shewanella sp W3-18-1 Sputw3181_3220 -176 5.3 GTGTAATTTAATTACAT
-124 5.5 TTGTAATAAAACTACAA
Shewanella baltica OS155 Sbal_0942 -176 5.3 GTGTAATTTAATTACAT
-148 4.3 AATTAAAAAAATTACAA
-124 5.5 TTGTAATAAAACTACAA
Shewanella frigidimarina NCIMB 400 Sfri_0964 -168 4.7 TTGTAATTAAATCACTT
-116 5.6 TTGTAATTAAATTACAG
Shewanella loihica PV-4 Shew_2850 -240 5.2 ATGTAGTAAAATTACAG
-188 5.4 TTGTAATAAAACTACAT
Shewanella pealeana ATCC 700345 Spea_3089 -232 4.5 TTGTTGTTAAATTACGT
-179 5.6 TTGTAATAAAATTACAG
Shewanella halifaxensis HAW-EB4 Shal_3174 -244 4.3 TTGTAGTTGAATTACCT
-191 5.6 TTGTAATAAAATTACAG
Shewanella sediminis HAW-EB3 Ssed_3418 -254 4.6 GTGTTGTAAAATTACAG
-202 5.6 TTGTAATAAAATTACAT
-37 5.1 GAGTAATTTTATTACAA
Shewanella sediminis HAW-EB3 Ssed_3419 -202 5.6 TTGTAATAAAATTACAT
-38 5.1 GAGTAATTTTATTACAA
Shewanella woodyi ATCC 51908 Swoo_3601 -195 4.7 TTGTAATAAACTTTCAG
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