Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LexA regulog to Shewanella loihica PV-4

Reference regulog properties
Source regulog: LexA - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella loihica PV-4
Orthologous TF(s) Shew_0127
Regulated genes 10
Built upon 192 sites [see more]
Predicted regulatory interactions in Shewanella loihica PV-4
Locus tag Position Score Sequence
Position: -45
Score: 4.9
Sequence: TACTGTATATACTGACAGGT
Locus tag: Shew_0127
Shew_0127 -45 4.9 TACTGTATATACTGACAGGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response repressor and protease LexA (EC 3.4.21.88)
Shewanella oneidensis MR-1 SO_4603 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella putrefaciens CN-32 Sputcn32_3780 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp W3-18-1 Sputw3181_0135 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp ANA-3 Shewana3_3989 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp MR-4 Shewmr4_3789 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella sp MR-7 Shewmr7_3862 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella baltica OS155 Sbal_0156 -45 5.9 TACTGTATATACTAACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella denitrificans OS217 Sden_3515 -45 5.1 TACTGTATATAATGACAGTC
-26 5.1 CACTGTATAAAAAGACAGGA
Shewanella frigidimarina NCIMB 400 Sfri_0260 -45 5 CACTGTATATAATGACAGTC
-26 5.1 CACTGTATAAAAAGACAGGA
Shewanella amazonensis SB2B Sama_3481 -45 5.6 TACTGTATATACTGACAGTA
-26 5 AACTGTATAGAAAAACAGGA
Shewanella loihica PV-4 Shew_0127 -45 4.9 TACTGTATATACTGACAGGT
-26 4.8 TACTGTATGGAAAGACAGGA
Shewanella pealeana ATCC 700345 Spea_3997 -45 5.2 TACTGTATATACTAACAGGT
-26 4.9 TACTGTATAGAAAGACAGGG
Shewanella halifaxensis HAW-EB4 Shal_0260 -45 4.9 TACTGTATATACTGACAGGT
-26 4.9 TACTGTATAGAAAGACAGGG
Shewanella piezotolerans WP3 swp_4821 -45 5.2 TACTGTATATACTAACAGGT
-26 5 TACTGTATAGAAAAACAGGT
Shewanella sediminis HAW-EB3 Ssed_0200 -45 5.6 TACTGTATATACTAACAGTT
-26 5 TACTGTATAGAAAGACAGGA
Shewanella woodyi ATCC 51908 Swoo_0180 -45 5.3 TACTGTATATACTGACAGTT
-26 5 TACTGTATAGAAAGACAGGA
Position: -62
Score: 5.7
Sequence: TACTGTATAAAAATTCAGTA
Locus tag: Shew_1196
Shew_1196 -62 5.7 TACTGTATAAAAATTCAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recN
Ortholog function: DNA repair protein RecN
Shewanella oneidensis MR-1 SO_3462 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella putrefaciens CN-32 Sputcn32_2771 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp W3-18-1 Sputw3181_1241 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp ANA-3 Shewana3_1104 -72 5.9 TACTGTATATAAATTCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp MR-4 Shewmr4_1104 -72 5.9 TACTGTATATAAATTCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella sp MR-7 Shewmr7_1170 -72 5.9 TACTGTATATAAATTCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella baltica OS155 Sbal_3153 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella denitrificans OS217 Sden_1151 -71 5.4 TACTGTATAAAAAACCAGTG
-49 5.6 TACTGTTTATCAATACAGTG
Shewanella frigidimarina NCIMB 400 Sfri_1043 -72 5.8 TACTGTATATAAAATCAGTA
-50 5.6 TACTGTTTATCAATACAGTG
Shewanella amazonensis SB2B Sama_1026 -73 5.4 TACTGTACAAAAAATCAGTA
-51 5.3 TACTGTGTATCAATACAGTA
Shewanella loihica PV-4 Shew_1196 -62 5.7 TACTGTATAAAAATTCAGTA
-40 4.9 TACTGTGCATGAATACAGTA
Shewanella pealeana ATCC 700345 Spea_1169 -62 5.9 TACTGTATGAATAAACAGTA
-40 5.3 TACTGTTTAACCATACAGTG
Shewanella halifaxensis HAW-EB4 Shal_1212 -62 5.8 TACTGTATAGATAAACAGTA
-40 5.5 TACTGTTTAACTATACAGTG
Shewanella piezotolerans WP3 swp_1346 -61 5.7 TACTGTATAGAAAAACAGTA
-39 5.6 TACTGTTTATCAATACAGTG
Shewanella sediminis HAW-EB3 Ssed_1281 -62 5.8 TACTGTATATAAAATCAGTA
-40 5.5 TACTGTTTAAAAACACAGTA
Shewanella woodyi ATCC 51908 Swoo_3359 -64 5.9 TACTGTATTTATGAACAGTA
-42 5.9 TACTGTTCATAAATACAGTA
Position: -127
Score: 5.6
Sequence: TACTGTATGATTGTACAGTA
Locus tag: Shew_1215
Shew_1215 -127 5.6 TACTGTATGATTGTACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombinase A
Shewanella oneidensis MR-1 SO_3430 -127 5.6 TACTGTATGATTGTACAGTA
Shewanella putrefaciens CN-32 Sputcn32_2747 -129 5.6 TACTGTATGATTGTACAGTA
Shewanella sp W3-18-1 Sputw3181_1265 -129 5.6 TACTGTATGATTGTACAGTA
Shewanella sp ANA-3 Shewana3_1126 -128 5.6 TACTGTATGATTGTACAGTA
Shewanella sp MR-4 Shewmr4_1125 -128 5.6 TACTGTATGATTGTACAGTA
Shewanella sp MR-7 Shewmr7_1196 -128 5.6 TACTGTATGATTGTACAGTA
Shewanella baltica OS155 Sbal_3117 -127 5.6 TACTGTATGATTGTACAGTA
Shewanella denitrificans OS217 Sden_1208 -203 5.8 TACTGTATGATTATACAGTA
Shewanella frigidimarina NCIMB 400 Sfri_1062 -113 5.5 TACTGTATGACTATACAGTA
Shewanella amazonensis SB2B Sama_1046 -115 5.6 TACTGTATGATTGTACAGTA
Shewanella loihica PV-4 Shew_1215 -127 5.6 TACTGTATGATTGTACAGTA
Shewanella pealeana ATCC 700345 Spea_1195 -124 5.6 TACTGTATGATTGTACAGTA
Shewanella halifaxensis HAW-EB4 Shal_1232 -124 5.6 TACTGTATGATTGTACAGTA
Shewanella piezotolerans WP3 swp_1366 -123 5.6 TACTGTATGATTGTACAGTA
Shewanella sediminis HAW-EB3 Ssed_1300 -135 5.6 TACTGTATGATTGTACAGTA
Shewanella woodyi ATCC 51908 Swoo_3340 -124 5.5 TACTGTATGACTATACAGTA
Position: -31
Score: 5.7
Sequence: AACTGTATATAAAAACAGTG
Locus tag: Shew_1799
Shew_1799 -31 5.7 AACTGTATATAAAAACAGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yebG
Ortholog function: SOS regulon DNA damage-inducible protein
Shewanella oneidensis MR-1 SO_2604 -31 6 TACTGTATATAAAAACAGTG
Shewanella putrefaciens CN-32 Sputcn32_2205 -30 6 TACTGTATATAAAAACAGTG
Shewanella sp W3-18-1 Sputw3181_1804 -30 6 TACTGTATATAAAAACAGTG
Shewanella sp ANA-3 Shewana3_1775 -31 6 TACTGTATATAAAAACAGTG
Shewanella sp MR-4 Shewmr4_1670 -31 6 TACTGTATATAAAAACAGTG
Shewanella sp MR-7 Shewmr7_1745 -31 6 TACTGTATATAAAAACAGTG
Shewanella baltica OS155 Sbal_2450 -31 6 TACTGTATATAAAAACAGTG
Shewanella denitrificans OS217 Sden_1719 -31 6 CACTGTATATAAAAACAGTA
Shewanella frigidimarina NCIMB 400 Sfri_2231 -31 5.9 CACTGTATATAAAAACAGTG
Shewanella amazonensis SB2B Sama_1582 -31 5.8 CACTGTATAAATAAACAGTG
Shewanella loihica PV-4 Shew_1799 -31 5.7 AACTGTATATAAAAACAGTG
Shewanella pealeana ATCC 700345 Spea_1932 -31 5.9 CACTGTATATAAAAACAGTG
Shewanella halifaxensis HAW-EB4 Shal_2367 -31 6 TACTGTATATAAAAACAGTG
Shewanella piezotolerans WP3 swp_2821 11 6 TACTGTATATAAAAACAGTG
Shewanella sediminis HAW-EB3 Ssed_2486 -31 5.9 AACTGTATATAAAAACAGTA
Shewanella woodyi ATCC 51908 Swoo_2130 -31 5.9 AACTGTATATAAAAACAGTA
Position: -145
Score: 6.1
Sequence: TACTGTATTTATATACAGTG
Locus tag: Shew_2102
Shew_2102 -145 6.1 TACTGTATTTATATACAGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: imuA
Ortholog function: Predicted RecA/RadA recombinase
Shewanella amazonensis SB2B Sama_1865 -66 5.9 TACTGTATAAATATACAGTT
Shewanella loihica PV-4 Shew_2102 -145 6.1 TACTGTATTTATATACAGTG
Position: -32
Score: 5.9
Sequence: TACTGTTAATTTATACAGTA
Locus tag: Shew_2299
Shew_2299 -32 5.9 TACTGTTAATTTATACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: topB
Ortholog function: DNA topoisomerase III (EC 5.99.1.2)
Shewanella oneidensis MR-1 SO_3061 -32 5.7 TACTGTAATTATATCCAGTA
Shewanella putrefaciens CN-32 Sputcn32_2435 -32 5.6 TACTGTAATTATATCCAGTG
Shewanella sp W3-18-1 Sputw3181_1573 -32 5.6 TACTGTAATTATATCCAGTG
Shewanella sp ANA-3 Shewana3_1486 -32 5.4 CACTGTAATTATATCCAGTG
Shewanella sp MR-4 Shewmr4_1433 -32 5.6 CACTGTAATTATATCCAGTA
Shewanella sp MR-7 Shewmr7_1498 30 5.6 CACTGTAATTATATCCAGTA
Shewanella baltica OS155 Sbal_2736 -32 5.6 TACTGTAATTATATCCAGTG
Shewanella denitrificans OS217 Sden_2400 -41 5.6 CACTGTAATTACATACAGTG
Shewanella frigidimarina NCIMB 400 Sfri_1401 -67 5.8 TACTGTAAATTTATACAGTT
Shewanella amazonensis SB2B Sama_2145 29 5.3 TACTGTAAATTCATCCAGTG
Shewanella loihica PV-4 Shew_2299 -32 5.9 TACTGTTAATTTATACAGTA
Shewanella pealeana ATCC 700345 Spea_1625 -36 5.9 TACTGTTAATTTATACAGTA
Shewanella halifaxensis HAW-EB4 Shal_2636 -36 5.9 TACTGTTAATTTATACAGTA
Shewanella piezotolerans WP3 swp_3111 -36 5.8 TACTGTTAATTTATACAGTG
Shewanella sediminis HAW-EB3 Ssed_1658 -38 5.4 TACTGGTAATTTATACAGTG
Shewanella woodyi ATCC 51908 Swoo_2976 -35 5.4 TACTGGTAATTTATACAGTG
Position: -43
Score: 5.4
Sequence: CACTGTTATTATGTACAGCA
Locus tag: Shew_2483
Shew_2483 -43 5.4 CACTGTTATTATGTACAGCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dinG
Ortholog function: ATP-dependent helicase DinG/Rad3
Shewanella oneidensis MR-1 SO_1819 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella putrefaciens CN-32 Sputcn32_1513 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella sp W3-18-1 Sputw3181_2587 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella sp ANA-3 Shewana3_2630 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella sp MR-4 Shewmr4_2470 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella sp MR-7 Shewmr7_2538 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella baltica OS155 Sbal_1629 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella denitrificans OS217 Sden_2429 -52 5.4 CACTGTTATTATGTACAGCA
Shewanella frigidimarina NCIMB 400 Sfri_2630 -51 5.4 CACTGTTATTATGTACAGCA
Shewanella amazonensis SB2B Sama_1249 -42 5.4 CACTGTTATTATGTACAGCA
Shewanella loihica PV-4 Shew_2483 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella pealeana ATCC 700345 Spea_2656 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella halifaxensis HAW-EB4 Shal_2730 -43 5.4 CACTGTTATTATGTACAGCA
Shewanella piezotolerans WP3 swp_3212 -10 5.4 CACTGTTATTATGTACAGCA
Shewanella sediminis HAW-EB3 Ssed_1566 -36 5.1 CACTGTTATTATGTACAGCT
Shewanella woodyi ATCC 51908 Swoo_3086 -37 5.1 CACTGTTATTATGTACAGCT
Position: -43
Score: 5.9
Sequence: TACTGTTTAAATGTACAGTA
Locus tag: Shew_2871
Shew_2871 -43 5.9 TACTGTTTAAATGTACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dinB
Ortholog function: DNA polymerase IV (EC 2.7.7.7)
Shewanella oneidensis MR-1 SO_1114 -44 5.9 AACTGTTTTTATATACAGTA
Shewanella putrefaciens CN-32 Sputcn32_0951 20 5.7 TACTGGTTTTATATACAGTA
Shewanella sp W3-18-1 Sputw3181_3225 -43 5.7 TACTGGTTTTATATACAGTA
Shewanella sp ANA-3 Shewana3_0949 -44 6.1 TACTGTTTTTATATACAGTA
Shewanella sp MR-4 Shewmr4_0947 -44 6.1 TACTGTTTTTATATACAGTA
Shewanella sp MR-7 Shewmr7_0985 -44 6.1 TACTGTTTTTATATACAGTA
Shewanella baltica OS155 Sbal_0935 -43 6.1 TACTGTTTTTATATACAGTA
Shewanella denitrificans OS217 Sden_1185 -52 5.8 CACTGTTTTTTTATACAGTA
Shewanella frigidimarina NCIMB 400 Sfri_0961 -57 6.1 TACTGTTTTTATATACAGTA
Shewanella amazonensis SB2B Sama_2527 -36 6.1 TACTGTTTTTATATACAGTA
Shewanella loihica PV-4 Shew_2871 -43 5.9 TACTGTTTAAATGTACAGTA
Shewanella pealeana ATCC 700345 Spea_3092 -44 6.1 TACTGTTTTTATATACAGTA
Shewanella halifaxensis HAW-EB4 Shal_3176 -44 6.1 TACTGTTTTTATATACAGTA
Shewanella piezotolerans WP3 swp_1179 -95 6.1 TACTGTTTTTATATACAGTA
Shewanella sediminis HAW-EB3 Ssed_3422 -56 6 TACTGTTTAAATATACAGTA
Shewanella woodyi ATCC 51908 Swoo_3604 -52 6 CACTGTTTTTATATACAGTA
Position: -299
Score: 5.5
Sequence: CGCTGTTTATTTATACAGTG
Locus tag: Shew_3147
Shew_3147 -299 5.5 CGCTGTTTATTTATACAGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: xerC
Ortholog function: Integron integrase IntI2
Shewanella loihica PV-4 Shew_3147 -299 5.5 CGCTGTTTATTTATACAGTG
Position: -71
Score: 5.1
Sequence: ATATGTATATATTTACAGTA
Locus tag: Shew_3507
Shew_3507 -71 5.1 ATATGTATATATTTACAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recG
Ortholog function: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
Shewanella oneidensis MR-1 SO_4364 -45 4.3 ATATGTATAAATTCACAGTG
Shewanella putrefaciens CN-32 Sputcn32_0450 -21 4.3 ATATGTATAAATTCACAGTG
Shewanella sp W3-18-1 Sputw3181_0304 -21 4.3 ATATGTATAAATTCACAGTG
Shewanella sp ANA-3 Shewana3_0348 -21 4.3 ATATGTATAAATTCACAGTG
Shewanella sp MR-4 Shewmr4_0354 -21 4.3 ATATGTATAAATTCACAGTG
Shewanella sp MR-7 Shewmr7_3672 -21 4.3 ATATGTATAAATTCACAGTG
Shewanella baltica OS155 Sbal_0346 -21 4.3 ATATGTATAAATTCACAGTG
Shewanella denitrificans OS217 Sden_3476 -36 4.8 ATATGTATAAATTTACAGTG
Shewanella frigidimarina NCIMB 400 Sfri_0356 -47 5.3 ATCTGTATATAATTACAGTG
Shewanella amazonensis SB2B Sama_3375 -36 4.4 ATATGTATAAATTCACAGTA
Shewanella loihica PV-4 Shew_3507 -71 5.1 ATATGTATATATTTACAGTA
Shewanella pealeana ATCC 700345 Spea_3884 -21 4.8 ATATGTATAAATTTACAGTG
Shewanella halifaxensis HAW-EB4 Shal_0385 -21 4.8 ATATGTATAAATTTACAGTG
Shewanella piezotolerans WP3 swp_0309 -21 4.8 ATATGTATAAATTTACAGTG
Shewanella sediminis HAW-EB3 Ssed_0329 -71 4.5 ATATGTATATAAACACAGTG
Shewanella woodyi ATCC 51908 Swoo_4592 -68 5 ATATGTATATAAATACAGTG
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