Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing topB gene

Properties
Regulog: LexA - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Proteobacteria/gamma
Built upon 192 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Shewanella amazonensis SB2B
Position: 29
Score: 5.29769
Sequence: TACTGTAAATTCATCCAGTG
Locus tag: Sama_2145
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB 29 5.3 TACTGTAAATTCATCCAGTG Sama_2145
Shewanella baltica OS155
Position: -32
Score: 5.57115
Sequence: TACTGTAATTATATCCAGTG
Locus tag: Sbal_2736
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB -32 5.6 TACTGTAATTATATCCAGTG Sbal_2736
Shewanella denitrificans OS217
Position: -41
Score: 5.63254
Sequence: CACTGTAATTACATACAGTG
Locus tag: Sden_2400
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB -41 5.6 CACTGTAATTACATACAGTG Sden_2400
Shewanella frigidimarina NCIMB 400
Position: -67
Score: 5.753
Sequence: TACTGTAAATTTATACAGTT
Locus tag: Sfri_1401
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB -67 5.8 TACTGTAAATTTATACAGTT Sfri_1401
Shewanella halifaxensis HAW-EB4
Position: -36
Score: 5.90981
Sequence: TACTGTTAATTTATACAGTA
Locus tag: Shal_2636
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB -36 5.9 TACTGTTAATTTATACAGTA Shal_2636
Shewanella loihica PV-4
Position: -32
Score: 5.90981
Sequence: TACTGTTAATTTATACAGTA
Locus tag: Shew_2299
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB -32 5.9 TACTGTTAATTTATACAGTA Shew_2299
Shewanella oneidensis MR-1
Position: -32
Score: 5.70393
Sequence: TACTGTAATTATATCCAGTA
Locus tag: SO_3061
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB -32 5.7 TACTGTAATTATATCCAGTA SO_3061
Shewanella pealeana ATCC 700345
Position: -36
Score: 5.90981
Sequence: TACTGTTAATTTATACAGTA
Locus tag: Spea_1625
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB -36 5.9 TACTGTTAATTTATACAGTA Spea_1625
Shewanella piezotolerans WP3
Position: -36
Score: 5.77703
Sequence: TACTGTTAATTTATACAGTG
Locus tag: swp_3111
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB -36 5.8 TACTGTTAATTTATACAGTG swp_3111
Shewanella putrefaciens CN-32
Position: -32
Score: 5.57115
Sequence: TACTGTAATTATATCCAGTG
Locus tag: Sputcn32_2435
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB -32 5.6 TACTGTAATTATATCCAGTG Sputcn32_2435
Shewanella sediminis HAW-EB3
Position: -38
Score: 5.39258
Sequence: TACTGGTAATTTATACAGTG
Locus tag: Ssed_1658
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB -38 5.4 TACTGGTAATTTATACAGTG Ssed_1658
Shewanella sp ANA-3
Position: -32
Score: 5.43837
Sequence: CACTGTAATTATATCCAGTG
Locus tag: Shewana3_1486
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB -32 5.4 CACTGTAATTATATCCAGTG Shewana3_1486
Shewanella sp MR-4
Position: -32
Score: 5.57115
Sequence: CACTGTAATTATATCCAGTA
Locus tag: Shewmr4_1433
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB -32 5.6 CACTGTAATTATATCCAGTA Shewmr4_1433
Shewanella sp MR-7
Position: 30
Score: 5.57115
Sequence: CACTGTAATTATATCCAGTA
Locus tag: Shewmr7_1498
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB 30 5.6 CACTGTAATTATATCCAGTA Shewmr7_1498
Shewanella sp W3-18-1
Position: -32
Score: 5.57115
Sequence: TACTGTAATTATATCCAGTG
Locus tag: Sputw3181_1573
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB -32 5.6 TACTGTAATTATATCCAGTG Sputw3181_1573
Shewanella woodyi ATCC 51908
Position: -35
Score: 5.39258
Sequence: TACTGGTAATTTATACAGTG
Locus tag: Swoo_2976
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB -35 5.4 TACTGGTAATTTATACAGTG Swoo_2976