Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LiuR regulog to Shewanella loihica PV-4

Reference regulog properties
Source regulog: LiuR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella loihica PV-4
Orthologous TF(s) Shew_2569
Regulated genes 6
Built upon 134 sites [see more]
Predicted regulatory interactions in Shewanella loihica PV-4
Locus tag Position Score Sequence
Position: -178
Score: 5.8
Sequence: GTTGACGTTAACGTAAGG
Locus tag: Shew_1032
Shew_1032 -178 5.8 GTTGACGTTAACGTAAGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltB
Ortholog function: glutamate synthase, large subunit
Shewanella oneidensis MR-1 SO_1325 -188 5.9 GTTGACGTTAACGTCAAG
Shewanella putrefaciens CN-32 Sputcn32_1136 -187 5.8 GTTGACGTTAACGTAACG
Shewanella sp W3-18-1 Sputw3181_3028 -187 5.9 GTTGACGTTAACGTAATG
Shewanella sp ANA-3 Shewana3_3050 -189 5.7 GTTAACGTTAACGTCAAG
Shewanella sp MR-4 Shewmr4_2872 -188 5.7 GTTAACGTTAACGTCAAG
Shewanella sp MR-7 Shewmr7_2954 -188 5.7 GTTAACGTTAACGTCAAG
Shewanella baltica OS155 Sbal_1178 -189 6.2 GTTGACGTTAACGTAAAG
Shewanella denitrificans OS217 Sden_2790 -188 6.2 GCTTACGTTAACGTAAAG
Shewanella frigidimarina NCIMB 400 Sfri_2951 -186 6.2 GTTTACGTTAACGTCAAG
Shewanella amazonensis SB2B Sama_0857 -191 5.8 GTTGACGTTAACGTAACC
Shewanella loihica PV-4 Shew_1032 -178 5.8 GTTGACGTTAACGTAAGG
Shewanella pealeana ATCC 700345 Spea_1013 -184 5.8 GTTTACGTTAAGGTAAGC
Shewanella halifaxensis HAW-EB4 Shal_1061 -185 6.2 GTTTACGTTAAGGTAAAC
Shewanella piezotolerans WP3 swp_3803 -185 6 GTTTACGTAAAGGTAAAC
Shewanella sediminis HAW-EB3 Ssed_1126 -177 6 GTTTACGTAAACGTCAAC
Shewanella woodyi ATCC 51908 Swoo_1221 -179 6.2 GTTTACGTTAACGTAATG
Position: -174
Score: 6.5
Sequence: CTTTACGTTAACGTAAAG
Locus tag: Shew_1555
Shew_1555 -174 6.5 CTTTACGTTAACGTAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: leucine dehydrogenase
Shewanella oneidensis MR-1 SO_2638 -171 6 CCTTACGTTTACGTAAAG
Shewanella putrefaciens CN-32 Sputcn32_2238 -172 6 GCTTACGTTTACGTAAAG
Shewanella sp W3-18-1 Sputw3181_1771 -172 6 GCTTACGTTTACGTAAAG
Shewanella sp ANA-3 Shewana3_1742 -171 6 CCTTACGTTTACGTAAAG
Shewanella sp MR-4 Shewmr4_1598 -171 6 CCTTACGTTTACGTAAAG
Shewanella sp MR-7 Shewmr7_1673 -171 6 CCTTACGTTTACGTAAAG
Shewanella baltica OS155 Sbal_2483 -151 6 GCTTACGTTTACGTAAAG
Shewanella denitrificans OS217 Sden_1823 -157 6.4 CTTTACGTTTACGTAAAG
Shewanella frigidimarina NCIMB 400 Sfri_2265 -195 6.4 CTTTACGTTTACGTAAAG
Shewanella amazonensis SB2B Sama_2067 -164 6 CTTTACGTTGACGTAAAG
Shewanella loihica PV-4 Shew_1555 -174 6.5 CTTTACGTTAACGTAAAG
Shewanella pealeana ATCC 700345 Spea_2543 -174 6.5 CTTTACGTTAACGTAAAG
Shewanella halifaxensis HAW-EB4 Shal_1711 -174 6.5 CTTTACGTTAACGTAAAG
Shewanella piezotolerans WP3 swp_1857 -175 6.5 CTTTACGTTAACGTAAAG
Shewanella sediminis HAW-EB3 Ssed_1877 -173 6.5 CTTTACGTTAACGTAAAG
Shewanella woodyi ATCC 51908 Swoo_2710 -174 5.8 ATTGACGTTAACGTAAAG
Position: -105
Score: 5.9
Sequence: CTTTACGTTCGCGTAAAC
Locus tag: Shew_1667
Shew_1667 -105 5.9 CTTTACGTTCGCGTAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ivdA
Ortholog function: 3-ketoacyl-CoA thiolase
Shewanella oneidensis MR-1 SO_1677 -96 5.9 CTTTACGTTCGCGTAAAC
Shewanella putrefaciens CN-32 Sputcn32_1397 -104 5.9 CTTTACGTTCGCGTAAAC
Shewanella sp W3-18-1 Sputw3181_2704 -104 5.9 CTTTACGTTCGCGTAAAC
Shewanella sp ANA-3 Shewana3_2771 -96 5.9 CTTTACGTTCGCGTAAAC
Shewanella sp MR-4 Shewmr4_2597 -96 5.9 CTTTACGTTCGCGTAAAC
Shewanella sp MR-7 Shewmr7_2664 -96 5.9 CTTTACGTTCGCGTAAAC
Shewanella baltica OS155 Sbal_1495 -100 5.9 CTTTACGTTCGCGTAAAC
Shewanella denitrificans OS217 Sden_1943 -97 6.2 CTTTACGTTAGCGTAAAC
Shewanella frigidimarina NCIMB 400 Sfri_1338 -78 5.6 CTTTACGTTCGCGTCAAC
Shewanella amazonensis SB2B Sama_1375 -110 5.9 CTTTACGTTCGCGTAAAC
Shewanella loihica PV-4 Shew_1667 -105 5.9 CTTTACGTTCGCGTAAAC
Shewanella pealeana ATCC 700345 Spea_2783 -168 5.9 CTTTACGTTCGCGTAAAC
Shewanella halifaxensis HAW-EB4 Shal_2878 -168 5.9 CTTTACGTTCGCGTAAAC
Shewanella piezotolerans WP3 swp_3387 -206 5.9 CTTTACGTTCGCGTAAAC
Shewanella sediminis HAW-EB3 Ssed_1473 -122 5.9 CTTTACGTTCGCGTAAAC
Shewanella woodyi ATCC 51908 Swoo_3202 -110 5.9 CTTTACGTTCGCGTAAAC
Position: -105
Score: 5.7
Sequence: GTTTACGTTAACGTAACT
Locus tag: Shew_1925
Shew_1925 -105 5.7 GTTTACGTTAACGTAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bkdA1
Ortholog function: 3-methyl-2-oxobutanoate dehydrogenase complex, E1 component, alpha subunit
Shewanella oneidensis MR-1 SO_2339 -90 6.2 GTTTACGTTAACGTAATG
Shewanella putrefaciens CN-32 Sputcn32_1885 -90 6.2 GTTTACGTTAACGTAATG
Shewanella sp W3-18-1 Sputw3181_2123 -90 6.2 GTTTACGTTAACGTAATG
Shewanella sp ANA-3 Shewana3_2131 -90 6.2 GTTTACGTTAACGTAATG
Shewanella sp MR-4 Shewmr4_2028 -90 6.2 GTTTACGTTAACGTAATG
Shewanella sp MR-7 Shewmr7_1947 -90 6.2 GTTTACGTTAACGTAATG
Shewanella baltica OS155 Sbal_2222 -90 6.2 GTTTACGTTAACGTAATG
Shewanella denitrificans OS217 Sden_1786 -83 6.2 GTTTACGTTAACGTAATG
Shewanella frigidimarina NCIMB 400 Sfri_1935 -86 6.2 GTTTACGTTAACGTAATG
Shewanella amazonensis SB2B Sama_1709 -81 6.2 GTTTACGTTAACGTAATG
Shewanella loihica PV-4 Shew_1925 -105 5.7 GTTTACGTTAACGTAACT
Shewanella pealeana ATCC 700345 Spea_2246 -91 6.2 GTTTACGTTAACGTAATG
Shewanella halifaxensis HAW-EB4 Shal_2234 -92 6.2 GTTTACGTTAACGTAATG
Shewanella piezotolerans WP3 swp_2606 -92 6.2 GTTTACGTTAACGTAATG
Shewanella sediminis HAW-EB3 Ssed_2329 -103 6.2 GTTTACGTTAACGTAATG
Shewanella woodyi ATCC 51908 Swoo_2278 -101 6.2 GTTTACGTTAACGTAATG
Position: -63
Score: 6
Sequence: CTTTACCTTTACGTAAAC
Locus tag: Shew_2569
Shew_2569 -63 6 CTTTACCTTTACGTAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: liuR
Ortholog function: branched chain amino acid metabolism regulator, MerR family
Shewanella oneidensis MR-1 SO_1898 -59 6 CTTTACCTTTACGTAAAC
Shewanella putrefaciens CN-32 Sputcn32_1720 -59 6 CTTTACCTTTACGTAAAC
Shewanella sp W3-18-1 Sputw3181_2305 -59 6 CTTTACCTTTACGTAAAC
Shewanella sp ANA-3 Shewana3_1673 -59 6 CTTTACCTTTACGTAAAC
Shewanella sp MR-4 Shewmr4_2321 -59 6 CTTTACCTTTACGTAAAC
Shewanella sp MR-7 Shewmr7_2393 -59 6 CTTTACCTTTACGTAAAC
Shewanella baltica OS155 Sbal_2827 -59 6 CTTTACCTTTACGTAAAC
Shewanella denitrificans OS217 Sden_2244 -58 6 CTTTACCTTTACGTAAAC
Shewanella frigidimarina NCIMB 400 Sfri_2726 -59 6 CTTTACCTTTACGTAAAC
Shewanella amazonensis SB2B Sama_1363 -65 6 CTTTACCTTTACGTAAAC
Shewanella loihica PV-4 Shew_2569 -63 6 CTTTACCTTTACGTAAAC
Shewanella pealeana ATCC 700345 Spea_2796 -63 6 CTTTACCTTTACGTAAAC
Shewanella halifaxensis HAW-EB4 Shal_2901 -62 6 CTTTACCTTTACGTAAAC
Shewanella piezotolerans WP3 swp_3441 -28 6 CTTTACCTTTACGTAAAC
Shewanella sediminis HAW-EB3 Ssed_1459 -60 6 CTTTACCTTTACGTAAAC
Shewanella woodyi ATCC 51908 Swoo_3222 -61 6 CTTTACCTTTACGTAAAC
Position: -100
Score: 5.9
Sequence: GTTGACGTTAACGTCAAC
Locus tag: Shew_2584
Shew_2584 -100 5.9 GTTGACGTTAACGTCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: etfB
Ortholog function: electron transfer flavoprotein, beta subunit
Shewanella oneidensis MR-1 SO_3145 -98 5.2 ATTGACGTTAACGTTAAC
Shewanella putrefaciens CN-32 Sputcn32_2511 -98 5.5 ATTGACGTTAACGTCAAC
Shewanella sp W3-18-1 Sputw3181_1497 -98 5.2 ATTGACGTTAACGTTAAC
Shewanella sp ANA-3 Shewana3_1405 -98 5.7 GTTGACGTTAACGTTAAC
Shewanella sp MR-4 Shewmr4_1352 -98 5.7 GTTGACGTTAACGTTAAC
Shewanella sp MR-7 Shewmr7_1417 -98 5.7 GTTGACGTTAACGTTAAC
Shewanella baltica OS155 Sbal_2847 -98 5.7 GTTGACGTTAACGTTAAC
Shewanella denitrificans OS217 Sden_2539 -97 5.9 GTTGACGTTAACGTCAAC
Shewanella frigidimarina NCIMB 400 Sfri_2748 -99 5.2 ATTGACGTTAACGTTAAC
Shewanella amazonensis SB2B Sama_1169 -106 5.5 GTTGACGTTTACGTTAAC
Shewanella loihica PV-4 Shew_2584 -100 5.9 GTTGACGTTAACGTCAAC
Shewanella pealeana ATCC 700345 Spea_2855 -121 5.7 GTTGACGTTAACGTTAAC
Shewanella halifaxensis HAW-EB4 Shal_2945 -120 5.7 GTTGACGTTAACGTTAAC
Shewanella piezotolerans WP3 swp_3472 -116 5.9 GTTGACGTTAACGTCAAC
Shewanella sediminis HAW-EB3 Ssed_1445 -96 5.7 GTTGACGTTAACGTTAAC
Shewanella woodyi ATCC 51908 Swoo_3236 -99 5.7 GTTGACGTTAACGTTAAC
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