Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of SO1393 regulog to Shewanella loihica PV-4

Reference regulog properties
Source regulog: SO1393 - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process:
Effector:
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella loihica PV-4
Orthologous TF(s) Shew_1679
Regulated genes 2
Built upon 20 sites [see more]
Predicted regulatory interactions in Shewanella loihica PV-4
Locus tag Position Score Sequence
Position: -51
Score: 6.5
Sequence: AGTAGACAACTTGGTCTACC
Locus tag: Shew_1679
Shew_1679 -51 6.5 AGTAGACAACTTGGTCTACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1393
Ortholog function: Transcriptional regulator, TetR family
Shewanella oneidensis MR-1 SO_1393 -129 5.1 AGTAGACAGATTTGTCTGTA
-91 6.6 AGTAGACTGATTTGTCTACT
Shewanella sp ANA-3 Shewana3_2980 -98 5.9 GGTAGACCAATCTGTCTGCT
-63 6.5 GGTAGACTGAGTTGTCTACC
Shewanella sp MR-4 Shewmr4_2801 -98 6 GGTAGACCAGTCTGTCTACC
-63 6.5 AGTAGACTGAGTTGTCTACC
Shewanella sp MR-7 Shewmr7_2884 -98 5.6 TGTAGACCAGTCTGTCTACT
-63 6.5 AGTAGACTGAGTTGTCTACC
Shewanella loihica PV-4 Shew_1679 -77 5.7 TGTAGACAAGTCTGTCTACC
-51 6.5 AGTAGACAACTTGGTCTACC
Position: -97
Score: 6.5
Sequence: GGTAGACCAAGTTGTCTACT
Locus tag: Shew_1680
Shew_1680 -97 6.5 GGTAGACCAAGTTGTCTACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1392
Ortholog function: hypothetical HPP domain-containing protein
Shewanella oneidensis MR-1 SO_1392 -203 6.6 AGTAGACAAATCAGTCTACT
-165 5.1 TACAGACAAATCTGTCTACT
Shewanella sp ANA-3 Shewana3_2981 -208 6.5 GGTAGACAACTCAGTCTACC
-173 5.9 AGCAGACAGATTGGTCTACC
Shewanella sp MR-4 Shewmr4_2802 -208 6.5 GGTAGACAACTCAGTCTACT
-173 6 GGTAGACAGACTGGTCTACC
Shewanella sp MR-7 Shewmr7_2885 -208 6.5 GGTAGACAACTCAGTCTACT
-173 5.6 AGTAGACAGACTGGTCTACA
Shewanella loihica PV-4 Shew_1680 -97 6.5 GGTAGACCAAGTTGTCTACT
-71 5.7 GGTAGACAGACTTGTCTACA