Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SO1393 - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process:
Effector:
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 20 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 2 2
Shewanella putrefaciens CN-32
Shewanella sp W3-18-1
Shewanella sp ANA-3 2 2
Shewanella sp MR-4 2 2
Shewanella sp MR-7 2 2
Shewanella baltica OS155
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400
Shewanella amazonensis SB2B
Shewanella loihica PV-4 2 2
Shewanella pealeana ATCC 700345
Shewanella halifaxensis HAW-EB4
Shewanella piezotolerans WP3
Shewanella sediminis HAW-EB3
Shewanella woodyi ATCC 51908
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
SO1392
*
Shewanella oneidensis MR-1

Site:
position = -203
score = 6.57695
sequence = AGTAGACAAATCAGTCTACT

Site:
position = -165
score = 5.12244
sequence = TACAGACAAATCTGTCTACT

Gene: SO_1392: hypothetical HPP domain-containing protein
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
*
Shewanella sp ANA-3

Site:
position = -208
score = 6.45926
sequence = GGTAGACAACTCAGTCTACC

Site:
position = -173
score = 5.92324
sequence = AGCAGACAGATTGGTCTACC

Gene: Shewana3_2981: hypothetical HPP domain-containing protein
*
Shewanella sp MR-4

Site:
position = -208
score = 6.45926
sequence = GGTAGACAACTCAGTCTACT

Site:
position = -173
score = 5.9957
sequence = GGTAGACAGACTGGTCTACC

Gene: Shewmr4_2802: hypothetical HPP domain-containing protein
*
Shewanella sp MR-7

Site:
position = -208
score = 6.45926
sequence = GGTAGACAACTCAGTCTACT

Site:
position = -173
score = 5.56991
sequence = AGTAGACAGACTGGTCTACA

Gene: Shewmr7_2885: hypothetical HPP domain-containing protein
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
*
Shewanella loihica PV-4

Site:
position = -97
score = 6.47146
sequence = GGTAGACCAAGTTGTCTACT

Site:
position = -71
score = 5.74312
sequence = GGTAGACAGACTTGTCTACA

Gene: Shew_1680: hypothetical HPP domain-containing protein
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2211: hypothetical HPP domain-containing protein
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
hypothetical HPP domain-containing protein
 
CRON 2.
SO1393
*
Shewanella oneidensis MR-1

Site:
position = -91
score = 6.57695
sequence = AGTAGACTGATTTGTCTACT

Site:
position = -129
score = 5.12244
sequence = AGTAGACAGATTTGTCTGTA

Gene: SO_1393: Transcriptional regulator, TetR family
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
*
Shewanella sp ANA-3

Site:
position = -98
score = 5.92324
sequence = GGTAGACCAATCTGTCTGCT

Site:
position = -63
score = 6.45926
sequence = GGTAGACTGAGTTGTCTACC

Gene: Shewana3_2980: Transcriptional regulator, TetR family
*
Shewanella sp MR-4

Site:
position = -63
score = 6.45926
sequence = AGTAGACTGAGTTGTCTACC

Site:
position = -98
score = 5.9957
sequence = GGTAGACCAGTCTGTCTACC

Gene: Shewmr4_2801: Transcriptional regulator, TetR family
*
Shewanella sp MR-7

Site:
position = -63
score = 6.45926
sequence = AGTAGACTGAGTTGTCTACC

Site:
position = -98
score = 5.56991
sequence = TGTAGACCAGTCTGTCTACT

Gene: Shewmr7_2884: Transcriptional regulator, TetR family
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
*
Shewanella loihica PV-4

Site:
position = -51
score = 6.47146
sequence = AGTAGACAACTTGGTCTACC

Site:
position = -77
score = 5.74312
sequence = TGTAGACAAGTCTGTCTACC

Gene: Shew_1679: Transcriptional regulator, TetR family
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Transcriptional regulator, TetR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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