Propagation of GcvA regulog to Shewanella loihica PV-4
| Source regulog: | GcvA - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | activator (repressor) |
| Biological process: | Glycine metabolism |
| Effector: | Glycine |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella loihica PV-4 |
| Orthologous TF(s) | Shew_2764 |
| Regulated genes | 4 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -97
Score: 5.1 Sequence: ATTAAAAAATCTAAT
Locus tag: Shew_1154
|
||||
| Shew_1154 | -97 | 5.1 | ATTAAAAAATCTAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3342 | ||||
| Ortholog function: putative membrane protein | ||||
| Shewanella oneidensis MR-1 | SO_3342 | -99 | 5.1 | ATTATATATTCTAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_2677 | -85 | 5 | ATTATTTTTTCTAAT |
| Shewanella sp W3-18-1 | Sputw3181_1334 | -85 | 5 | ATTATTTTTTCTAAT |
| Shewanella sp ANA-3 | Shewana3_1204 | -99 | 4.8 | ATGAAATATTCTAAT |
| -77 | 4.2 | TTTAAATAATCTCAT | ||
| Shewanella sp MR-4 | Shewmr4_1203 | -99 | 5.1 | ATTAAATATTCTAAT |
| -77 | 4.2 | TTTAAATAATCTCAT | ||
| Shewanella sp MR-7 | Shewmr7_1274 | -99 | 5.1 | ATTAAATATTCTAAT |
| -77 | 4.2 | TTTAAATAATCTCAT | ||
| Shewanella baltica OS155 | Sbal_3015 | -97 | 5 | ATTAATTTTTCTAAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0596 | -171 | 4.3 | ATTATTAAAACTATT |
| -96 | 5 | ATTAGATTAATTAAT | ||
| Shewanella amazonensis SB2B | Sama_2463 | -113 | 4.6 | ATAATAAAAACTAAT |
| Shewanella loihica PV-4 | Shew_1154 | -97 | 5.1 | ATTAAAAAATCTAAT |
| Shewanella pealeana ATCC 700345 | Spea_1141 | -96 | 5.1 | ATTAGAAAATGTAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_1186 | -96 | 5.1 | ATTAGAAAATATAAT |
| Shewanella piezotolerans WP3 | swp_1289 | -95 | 5 | ATTAGTTTTTTTAAT |
| Shewanella sediminis HAW-EB3 | Ssed_1246 | -97 | 5.1 | ATTAAAATATCTAAT |
| Shewanella woodyi ATCC 51908 | Swoo_1346 | -173 | 4.6 | ATTAGCTAAACTAAA |
| -98 | 5.6 | ATTAGAAAAACTAAT | ||
|
Position: -335
Score: 5.6 Sequence: ATTAGTATTTCTAAT
Locus tag: Shew_1522
|
||||
| Shew_1522 | -335 | 5.6 | ATTAGTATTTCTAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2753 | ||||
| Ortholog function: Prolyl endopeptidase (EC 3.4.21.26) | ||||
| Shewanella oneidensis MR-1 | SO_2753 | -256 | 5.2 | ATTAGCTAAACTAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1602 | -255 | 5.3 | ATTAGCAAATCTAAT |
| Shewanella sp W3-18-1 | Sputw3181_2420 | -255 | 5.3 | ATTAGCAAATCTAAT |
| Shewanella sp ANA-3 | Shewana3_2536 | -255 | 5.2 | ATTAGCAAAACTAAT |
| Shewanella sp MR-4 | Shewmr4_2373 | -255 | 5.2 | ATTAGCAAAACTAAT |
| Shewanella sp MR-7 | Shewmr7_2445 | -255 | 5.2 | ATTAGCAAAACTAAT |
| Shewanella baltica OS155 | Sbal_1741 | -254 | 5.6 | ATTAGTAATTCTAAT |
| Shewanella amazonensis SB2B | Sama_2091 | -247 | 5.6 | ATTAGTTTAACTAAT |
| Shewanella loihica PV-4 | Shew_1522 | -336 | 5.6 | ATTAGtaTtTCTAAT |
| Shewanella pealeana ATCC 700345 | Spea_2569 | -79 | 5.3 | ATAAGATTATCTAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_1686 | -84 | 5.1 | ATAAGATTATCTCAT |
| Shewanella piezotolerans WP3 | swp_1825 | -310 | 5.6 | ATTAGtTTtaCTAAT |
| Shewanella sediminis HAW-EB3 | Ssed_1852 | -278 | 5.2 | ATTAGTTTTTCTTAT |
| Shewanella woodyi ATCC 51908 | Swoo_2736 | -280 | 5.6 | ATTAGTTTATCTAAT |
|
Position: -184
Score: 4.1 Sequence: TTGAAAAAAACTAAT
Locus tag: Shew_1625
|
||||
| Shew_1625 | -184 | 4.1 | TTGAAAAAAACTAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdaA | ||||
| Ortholog function: L-serine dehydratase 1 (EC 4.3.1.17) | ||||
| Shewanella oneidensis MR-1 | SO_2248 | -199 | 4.4 | ATCAAAAAAACTAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_2171 | -202 | 4.4 | ATCAAAAAAACTAAT |
| Shewanella sp W3-18-1 | Sputw3181_1837 | -202 | 4.4 | ATCAAAAAAACTAAT |
| Shewanella sp ANA-3 | Shewana3_2295 | -199 | 4.4 | ATCAAAAAAACTAAT |
| Shewanella sp MR-4 | Shewmr4_1725 | -199 | 4.4 | ATCAAAAAAACTAAT |
| Shewanella sp MR-7 | Shewmr7_1804 | -199 | 4.4 | ATCAAAAAAACTAAT |
| Shewanella baltica OS155 | Sbal_2417 | -197 | 4.4 | ATTTAAAAAACTAAT |
| Shewanella denitrificans OS217 | Sden_1946 | -208 | 5.2 | ATAAGAAAAACTAAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2402 | -140 | 4.5 | ATCAAAAAATCTAAT |
| Shewanella amazonensis SB2B | Sama_1325 | -189 | 4.6 | ATAAAAATAACTAAT |
| Shewanella loihica PV-4 | Shew_1625 | -184 | 4.1 | TTGAAAAAAACTAAT |
| Shewanella pealeana ATCC 700345 | Spea_1538 | -232 | 5.7 | ATTAGATTATCTAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_1608 | -244 | 5.3 | ATTAGCTTATCTAAT |
| Shewanella piezotolerans WP3 | swp_1748 | -246 | 5.6 | ATTAGTTTATCTAAT |
| Shewanella sediminis HAW-EB3 | Ssed_2838 | -187 | 4.8 | ATTAAAAAATCTCAT |
| Shewanella woodyi ATCC 51908 | Swoo_1806 | -206 | 4.7 | CTTAGCTTATCTAAT |
| -179 | 4.8 | ATTAAAAAAACTCAT | ||
|
Position: -38
Score: 5.6 Sequence: ATTAGAAAAACTAAT
Locus tag: Shew_2764
|
||||
| Shew_2764 | -38 | 5.6 | ATTAGAAAAACTAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gcvA | ||||
| Ortholog function: Glycine cleavage system transcriptional activator GcvA | ||||
| Shewanella oneidensis MR-1 | SO_1533 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1282 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella sp W3-18-1 | Sputw3181_2824 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella sp ANA-3 | Shewana3_2894 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella sp MR-4 | Shewmr4_2724 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella sp MR-7 | Shewmr7_2795 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella baltica OS155 | Sbal_1364 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella denitrificans OS217 | Sden_2565 | -54 | 5.2 | ATTAGAAAAACTTAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2783 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella amazonensis SB2B | Sama_2429 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella loihica PV-4 | Shew_2764 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella pealeana ATCC 700345 | Spea_2984 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_3073 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella piezotolerans WP3 | swp_3612 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella sediminis HAW-EB3 | Ssed_3322 | -38 | 5.6 | ATTAGAAAAACTAAT |
| Shewanella woodyi ATCC 51908 | Swoo_3471 | -38 | 5.6 | ATTAGAAAAACTAAT |