Propagation of NarP regulog to Shewanella loihica PV-4
| Source regulog: | NarP - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrite; Nitrate |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Shewanella loihica PV-4 |
| Orthologous TF(s) | Shew_0842 |
| Regulated genes | 16 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -106
Score: 4.3 Sequence: TATTCCTTAAGTGATA
Locus tag: Shew_0073
|
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| Shew_0073 | -106 | 4.3 | TATTCCTTAAGTGATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4520 | ||||
| Ortholog function: Coproporphyrinogen III oxidase, oxygen-independent | ||||
| Shewanella oneidensis MR-1 | SO4520 | -95 | 4.4 | TACTCCATTCGAGGTA |
| Shewanella sp ANA-3 | Shewana3_3926 | -95 | 4.4 | TACTCCATACGAGGTA |
| Shewanella sp MR-4 | Shewmr4_3730 | -95 | 4.4 | TACTCCATACGAGGTA |
| Shewanella sp MR-7 | Shewmr7_3801 | -95 | 4.4 | TACTCCATACGAGGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0076 | -106 | 4.5 | TATCTCTAAAGTGATA |
| Shewanella loihica PV-4 | Shew_0073 | -106 | 4.3 | TATTCCTTAAGTGATA |
| Shewanella woodyi ATCC 51908 | Swoo_4806 | -107 | 4.8 | TAACTCTAAAGTGGTA |
|
Position: -177
Score: 4.4 Sequence: TGCCTATAAAGAGGTA
Locus tag: Shew_0504
|
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| Shew_0504 | -177 | 4.4 | TGCCTATAAAGAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nnrS2 | ||||
| Ortholog function: NnrS protein involved in response to NO | ||||
| Shewanella loihica PV-4 | Shew_0504 | -177 | 4.4 | TGCCTATAAAGAGGTA |
| Shewanella pealeana ATCC 700345 | Spea_1227 | -155 | 4.4 | TACTCATTAAGATATA |
| Shewanella halifaxensis HAW-EB4 | Shal_1261 | -153 | 4.6 | TACCTATAAAGATATA |
| Shewanella piezotolerans WP3 | swp_3404 | -158 | 4.5 | TACCTACAAAGGAATA |
|
Position: -156
Score: 4.8 Sequence: TACCACTTTGTAGGTA
Locus tag: Shew_0699
|
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| Shew_0699 | -156 | 4.8 | TACCACTTTGTAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nhaD | ||||
| Ortholog function: Na+/H+ antiporter NhaD | ||||
| Shewanella amazonensis SB2B | Sama_2753 | -145 | 4.5 | TACCACCTTGTAGGTA |
| Shewanella loihica PV-4 | Shew_0699 | -156 | 4.8 | TACCACTTTGTAGGTA |
|
Position: -161
Score: 5.1 Sequence: TACCCCTTATGGGGTA
Locus tag: Shew_0843
|
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| Shew_0843 | -161 | 5.1 | TACCCCTTATGGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narQ | ||||
| Ortholog function: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) | ||||
| Shewanella oneidensis MR-1 | SO3981 | -199 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0684 | -162 | 5.2 | TACCTCTTAGGAGGTA |
| Shewanella sp W3-18-1 | Sputw3181_3487 | -162 | 5.2 | TACCTCTTAGGAGGTA |
| Shewanella sp ANA-3 | Shewana3_0657 | -163 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella sp MR-4 | Shewmr4_0658 | -164 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella sp MR-7 | Shewmr7_3364 | -164 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella baltica OS155 | Sbal_0793 | -146 | 5.1 | TACCTCTTAGGGGGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0621 | -188 | 5.1 | TACCCCTTATGGGGTA |
| Shewanella amazonensis SB2B | Sama_0647 | -160 | 4.9 | TACCCATTAAGTGGTA |
| Shewanella loihica PV-4 | Shew_0843 | -161 | 5.1 | TACCCCTTATGGGGTA |
| Shewanella pealeana ATCC 700345 | Spea_0830 | -157 | 5 | TACCTCCTATGAGGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0885 | -159 | 4.7 | TACCTCCAACGAGGTA |
| Shewanella piezotolerans WP3 | swp_3960 | -263 | 5.1 | TACCCCTTATGGGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_0930 | -161 | 4.9 | TACCCCTAAGGGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_0971 | -160 | 5.2 | TACCCCTTATGAGGTA |
|
Position: -102
Score: 5 Sequence: TACCCCATAAGGGGTA
Locus tag: Shew_0844
|
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| Shew_0844 | -102 | 5 | TACCCCATAAGGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrfA | ||||
| Ortholog function: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) | ||||
| Shewanella oneidensis MR-1 | SO3980 | -95 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0685 | -95 | 5.2 | TACCTCCTAAGAGGTA |
| Shewanella sp W3-18-1 | Sputw3181_3486 | -95 | 5.2 | TACCTCCTAAGAGGTA |
| Shewanella sp ANA-3 | Shewana3_0658 | -77 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella sp MR-4 | Shewmr4_0659 | -77 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella sp MR-7 | Shewmr7_3363 | -77 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella baltica OS155 | Sbal_0794 | -95 | 5.2 | TACCCCCTAAGAGGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0622 | -111 | 5 | TACCCCATAAGGGGTA |
| Shewanella amazonensis SB2B | Sama_0648 | -101 | 5 | TACCACTTAATGGGTA |
| Shewanella loihica PV-4 | Shew_0844 | -102 | 5 | TACCCCATAAGGGGTA |
| Shewanella pealeana ATCC 700345 | Spea_0831 | -101 | 4.9 | TACCTCATAGGAGGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0886 | -98 | 4.7 | TACCTCGTTGGAGGTA |
| Shewanella piezotolerans WP3 | swp_3958 | -96 | 5 | TACCCCATAAGGGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_0931 | -100 | 5 | TACCCCCTTAGGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_0972 | -100 | 5 | TACCTCATAAGGGGTA |
|
Position: -21
Score: 4.8 Sequence: TACCTATAAAGGGATA
Locus tag: Shew_0918
|
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| Shew_0918 | -21 | 4.8 | TACCTATAAAGGGATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrF | ||||
| Ortholog function: Decaheme cytochrome c MtrF | ||||
| Shewanella oneidensis MR-1 | SO1659 | -80 | 4.9 | TACCACTTTATAAGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_1380 | -77 | 4.9 | TACCACTTTATAAGTA |
| Shewanella sp W3-18-1 | Sputw3181_2721 | -77 | 4.9 | TACCACTTTATAAGTA |
| Shewanella sp ANA-3 | Shewana3_2787 | -77 | 4.9 | TACCACTTTATAAGTA |
| Shewanella sp MR-4 | Shewmr4_2613 | -78 | 4.9 | TACCACTTTATAAGTA |
| Shewanella sp MR-7 | Shewmr7_2680 | -78 | 4.9 | TACCACTTTATAAGTA |
| Shewanella baltica OS155 | Sbal_1478 | -78 | 4.7 | TACCACTTTGTAAGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0913 | -191 | 4.9 | TACCTCTTTAGGGTTA |
| Shewanella amazonensis SB2B | Sama_2228 | -77 | 4.5 | TACCACTTTATATATA |
| Shewanella loihica PV-4 | Shew_0918 | -21 | 4.8 | TACCTATAAAGGGATA |
| Shewanella piezotolerans WP3 | swp_0896 | -18 | 4.8 | TACCTATAAAGGGATA |
|
Position: -153
Score: 4.5 Sequence: TACCGATTTAGGGGTA
Locus tag: Shew_1768
|
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| Shew_1768 | -153 | 4.5 | TACCGATTTAGGGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napE2 | ||||
| Ortholog function: Periplasmic nitrate reductase component NapE | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1901 | -145 | 4.4 | TACCGATTTGGAGGTA |
| Shewanella sp W3-18-1 | Sputw3181_2107 | -145 | 4.4 | TACCGATTTGGAGGTA |
| Shewanella sp MR-4 | Shewmr4_1840 | -137 | 4.4 | TACCGATTTGGAGGTA |
| Shewanella sp MR-7 | Shewmr7_2137 | -137 | 4.4 | TACCGATTTGGAGGTA |
| Shewanella baltica OS155 | Sbal_1908 | -144 | 4.6 | TACCAATTTGGAGGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2555 | -119 | 4.3 | TACCAATTTGTGAGTA |
| Shewanella amazonensis SB2B | Sama_1620 | -106 | 4.5 | TACCGATTTAGGGGTA |
| Shewanella loihica PV-4 | Shew_1768 | -153 | 4.5 | TACCGATTTAGGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_2682 | -157 | 4.4 | TACCAAGTTAGAGGTA |
|
Position: -107
Score: 3.8 Sequence: CCCCTCTTTTTAGGTA
Locus tag: Shew_2281
|
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| Shew_2281 | -107 | 3.8 | CCCCTCTTTTTAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3058 | ||||
| Ortholog function: Flavocytochrome c, flavin subunit | ||||
| Shewanella oneidensis MR-1 | SO3058 | -77 | 4.3 | TACCTCCTTTTAGGTG |
| Shewanella putrefaciens CN-32 | Sputcn32_2432 | -77 | 4.5 | TACCTCTTTTTAGGTG |
| Shewanella sp W3-18-1 | Sputw3181_1576 | -77 | 4.5 | TACCTCTTTTTAGGTG |
| Shewanella sp ANA-3 | Shewana3_1489 | -77 | 4.5 | TACCTCTTTTTAGGTG |
| Shewanella loihica PV-4 | Shew_2281 | -107 | 3.8 | CCCCTCTTTTTAGGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_3447 | -105 | 4 | TATCGCTAATTAGGTA |
|
Position: -214
Score: 5.1 Sequence: TACCTCTAAAGAAATA
Locus tag: Shew_2524
|
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| Shew_2524 | -214 | 5.1 | TACCTCTAAAGAAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omcA | ||||
| Ortholog function: Surface localized decaheme cytochrome c lipoprotein, OmcA | ||||
| Shewanella amazonensis SB2B | Sama_1209 | -182 | 5.1 | TACCCCTAAAGAAATA |
| Shewanella loihica PV-4 | Shew_2524 | -214 | 5.1 | TACCTCTAAAGAAATA |
|
Position: -193
Score: 5.2 Sequence: TACCCCTTTAGAAATA
Locus tag: Shew_2525
|
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| Shew_2525 | -193 | 5.2 | TACCCCTTTAGAAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrC | ||||
| Ortholog function: Surface localized decaheme cytochrome c lipoprotein, MtrC | ||||
| Shewanella oneidensis MR-1 | SO1778 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella putrefaciens CN-32 | Sputcn32_1478 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp W3-18-1 | Sputw3181_2623 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp ANA-3 | Shewana3_2676 | -203 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp MR-4 | Shewmr4_2510 | -203 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella sp MR-7 | Shewmr7_2578 | -203 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella baltica OS155 | Sbal_1589 | -204 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2637 | -178 | 4.9 | TACCTCTTTATTAATA |
| Shewanella amazonensis SB2B | Sama_1208 | -192 | 4.9 | TACCCCTTTTGAAATA |
| -133 | 5 | TACCCCCTATGAGGTA | ||
| Shewanella loihica PV-4 | Shew_2525 | -193 | 5.2 | TACCCCTTTAGAAATA |
| Shewanella pealeana ATCC 700345 | Spea_2698 | -195 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella halifaxensis HAW-EB4 | Shal_2784 | -194 | 5.2 | TACCTCTTTAGAAATA |
| Shewanella piezotolerans WP3 | swp_3278 | -193 | 5.1 | TACCTCTTTATAAATA |
| Shewanella sediminis HAW-EB3 | Ssed_1525 | -205 | 5 | TACCCCTTTATAAATA |
| Shewanella woodyi ATCC 51908 | Swoo_3125 | -218 | 5 | TACCCCTTTATAAATA |
|
Position: -248
Score: 5 Sequence: TACCTCCAAAGAGATA
Locus tag: Shew_2580
|
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| Shew_2580 | -248 | 5 | TACCTCCAAAGAGATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3141 | ||||
| Ortholog function: Nonaheme cytochrome c lipoprotein | ||||
| Shewanella oneidensis MR-1 | SO3140.1 | -205 | 4.3 | TACTTCCAAAGATATA |
| Shewanella oneidensis MR-1 | SO3140.2 | -205 | 4.3 | TACTTCCAAAGATATA |
| Shewanella putrefaciens CN-32 | Sputcn32_2507 | -219 | 4.9 | TACCTCTAAAGTAATA |
| Shewanella sp W3-18-1 | Sputw3181_1501 | -219 | 4.4 | TATCTCTAAAGTAATA |
| Shewanella sp ANA-3 | Shewana3_1409 | -216 | 4.6 | TACCTCCAAAGATATA |
| Shewanella sp MR-4 | Shewmr4_1356 | -215 | 4.6 | TACCTCCAAAGATATA |
| Shewanella baltica OS155 | Sbal_2843 | -217 | 4.4 | TACCTCCAAAGTATTA |
| Shewanella loihica PV-4 | Shew_2580 | -248 | 5 | TACCTCCAAAGAGATA |
| Shewanella woodyi ATCC 51908 | Swoo_4517 | -161 | 5.1 | TACCTCTTTAGTAGTA |
|
Position: -166
Score: 5 Sequence: TACCACTTTAGAGATA
Locus tag: Shew_2655
|
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| Shew_2655 | -166 | 5 | TACCACTTTAGAGATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Shew_2655 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Shewanella loihica PV-4 | Shew_2655 | -166 | 5 | TACCACTTTAGAGATA |
| -152 | 4.3 | TACCTCTAATTCAGTA | ||
| Shewanella pealeana ATCC 700345 | Spea_3233 | -165 | 4.5 | TACCTACTTGTAGGTA |
| -151 | 4.4 | TATCCCTAAATTAGTA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3305 | -165 | 4.3 | TACCTATTTGTGTGTA |
| -151 | 4.6 | TACCTCTAAATCGGTA | ||
| Shewanella piezotolerans WP3 | swp_1107 | -165 | 5 | TACCCATTTATAGGTA |
| -151 | 4.9 | TACCTCTAAATTAGTA | ||
| Shewanella sediminis HAW-EB3 | Ssed_3185 | -176 | 4.6 | TACTACTTTAGGAGTA |
| -162 | 5 | TACCTCCTTATAAGTA | ||
| Shewanella woodyi ATCC 51908 | Swoo_3303 | -164 | 5 | TACCACTTTATAGGTA |
| -150 | 4.8 | TACCACTTAATTAGTA | ||
|
Position: -268
Score: 4.5 Sequence: TACCTCTTTGTGATTA
Locus tag: Shew_3112
|
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| Shew_3112 | -268 | 4.5 | TACCTCTTTGTGATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fccA | ||||
| Ortholog function: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) | ||||
| Shewanella oneidensis MR-1 | SO0970 | -43 | 4.5 | TATCCCTTATTAAGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0905 | -42 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella sp W3-18-1 | Sputw3181_3267 | -42 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella sp ANA-3 | Shewana3_3318 | -43 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella sp MR-4 | Shewmr4_0808 | -43 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella sp MR-7 | Shewmr7_3215 | -43 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella baltica OS155 | Sbal_0859 | -42 | 4.7 | TAACCCTTATTAAGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3690 | -313 | 4.6 | TACCTCTTTATAACTA |
| Shewanella amazonensis SB2B | Sama_0611 | -35 | 5.2 | TACCTCTTTATAAGTA |
| Shewanella loihica PV-4 | Shew_3112 | -268 | 4.5 | TACCTCTTTGTGATTA |
| Shewanella pealeana ATCC 700345 | Spea_0722 | -101 | 4.5 | TACCTCAAAGTGAGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0776 | -101 | 4.3 | TACCTCGAATTGAGTA |
|
Position: -123
Score: 4.9 Sequence: TACCTCTCAAGAGGTA
Locus tag: Shew_3205
|
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| Shew_3205 | -123 | 4.9 | TACCTCTCAAGAGGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napD | ||||
| Ortholog function: Periplasmic nitrate reductase component NapD | ||||
| Shewanella oneidensis MR-1 | SO0849 | -119 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3147 | -116 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella sp W3-18-1 | Sputw3181_0796 | -116 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella sp ANA-3 | Shewana3_3429 | -118 | 4.8 | TACCTCTTGCGAGGTA |
| Shewanella sp MR-4 | Shewmr4_0705 | -118 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella sp MR-7 | Shewmr7_3317 | -118 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella baltica OS155 | Sbal_3510 | -119 | 4.9 | TACCTCTTGTGAGGTA |
| Shewanella amazonensis SB2B | Sama_2982 | -105 | 4.8 | TACCTCCTAGTGGGTA |
| Shewanella loihica PV-4 | Shew_3205 | -123 | 4.9 | TACCTCTCAAGAGGTA |
| Shewanella pealeana ATCC 700345 | Spea_0624 | -118 | 4.9 | TACCCCTTGTGAGGTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0716 | -119 | 4.7 | TACCCCTTGCGAGGTA |
| Shewanella piezotolerans WP3 | swp_4456 | -111 | 4.9 | TACCCCTTGTGAGGTA |
| Shewanella sediminis HAW-EB3 | Ssed_3956 | -132 | 4.7 | TACCTCTTGTTGGGTA |
| Shewanella woodyi ATCC 51908 | Swoo_4109 | -124 | 5 | TACCCCTTACTAGGTA |
|
Position: -261
Score: 4.9 Sequence: TACCCCTTTGGGAGTA
Locus tag: Shew_3260
|
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| Shew_3260 | -261 | 4.9 | TACCCCTTTGGGAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp35 | ||||
| Ortholog function: Outer membrane porin, predicted | ||||
| Shewanella oneidensis MR-1 | SO3896 | -255 | 5.2 | TACCTCTTTAGTGGTA |
| Shewanella sp ANA-3 | Shewana3_0733 | -255 | 5.1 | TACCTCTTTAGTAGTA |
| Shewanella sp MR-4 | Shewmr4_3228 | -255 | 5.1 | TACCTCTTTAGTAGTA |
| Shewanella sp MR-7 | Shewmr7_0761 | -255 | 5.1 | TACCTCTTTAGTAGTA |
| Shewanella baltica OS155 | Sbal_3570 | -256 | 4.9 | TACCACTTAAGTAGTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0503 | -243 | 4.3 | CATCCCTAAAGAGGTA |
| Shewanella loihica PV-4 | Shew_3260 | -261 | 4.9 | TACCCCTTTGGGAGTA |
| Shewanella pealeana ATCC 700345 | Spea_0589 | -260 | 4.6 | CACCTCTTTATAGATA |
| Shewanella halifaxensis HAW-EB4 | Shal_0676 | -260 | 4.8 | TACTCCTTTAGGGATA |
| Shewanella piezotolerans WP3 | swp_4514 | -260 | 5.1 | TACCCCTTTAGGGATA |
| Shewanella sediminis HAW-EB3 | Ssed_4009 | -263 | 4.1 | TACTTCGTTCTAGGTA |