Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of NarP regulog to Shewanella loihica PV-4

Reference regulog properties
Source regulog: NarP - Shewanellaceae
Regulator type: Transcription factor
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Phylum: Proteobacteria
Propagated regulon:
Target genome Shewanella loihica PV-4
Orthologous TF(s) Shew_0842
Regulated genes 16
Built upon 249 sites [see more]
Predicted regulatory interactions in Shewanella loihica PV-4
Locus tag Position Score Sequence
Position: -106
Score: 4.3
Sequence: TATTCCTTAAGTGATA
Locus tag: Shew_0073
Shew_0073 -106 4.3 TATTCCTTAAGTGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4520
Ortholog function: Coproporphyrinogen III oxidase, oxygen-independent
Shewanella oneidensis MR-1 SO4520 -95 4.4 TACTCCATTCGAGGTA
Shewanella sp ANA-3 Shewana3_3926 -95 4.4 TACTCCATACGAGGTA
Shewanella sp MR-4 Shewmr4_3730 -95 4.4 TACTCCATACGAGGTA
Shewanella sp MR-7 Shewmr7_3801 -95 4.4 TACTCCATACGAGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0076 -106 4.5 TATCTCTAAAGTGATA
Shewanella loihica PV-4 Shew_0073 -106 4.3 TATTCCTTAAGTGATA
Shewanella woodyi ATCC 51908 Swoo_4806 -107 4.8 TAACTCTAAAGTGGTA
Position: -177
Score: 4.4
Sequence: TGCCTATAAAGAGGTA
Locus tag: Shew_0504
Shew_0504 -177 4.4 TGCCTATAAAGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nnrS2
Ortholog function: NnrS protein involved in response to NO
Shewanella loihica PV-4 Shew_0504 -177 4.4 TGCCTATAAAGAGGTA
Shewanella pealeana ATCC 700345 Spea_1227 -155 4.4 TACTCATTAAGATATA
Shewanella halifaxensis HAW-EB4 Shal_1261 -153 4.6 TACCTATAAAGATATA
Shewanella piezotolerans WP3 swp_3404 -158 4.5 TACCTACAAAGGAATA
Position: -156
Score: 4.8
Sequence: TACCACTTTGTAGGTA
Locus tag: Shew_0699
Shew_0699 -156 4.8 TACCACTTTGTAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nhaD
Ortholog function: Na+/H+ antiporter NhaD
Shewanella amazonensis SB2B Sama_2753 -145 4.5 TACCACCTTGTAGGTA
Shewanella loihica PV-4 Shew_0699 -156 4.8 TACCACTTTGTAGGTA
Position: -161
Score: 5.1
Sequence: TACCCCTTATGGGGTA
Locus tag: Shew_0843
Shew_0843 -161 5.1 TACCCCTTATGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: narQ
Ortholog function: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-)
Shewanella oneidensis MR-1 SO3981 -199 5.1 TACCTCTTAGGGGGTA
Shewanella putrefaciens CN-32 Sputcn32_0684 -162 5.2 TACCTCTTAGGAGGTA
Shewanella sp W3-18-1 Sputw3181_3487 -162 5.2 TACCTCTTAGGAGGTA
Shewanella sp ANA-3 Shewana3_0657 -163 5.1 TACCTCTTAGGGGGTA
Shewanella sp MR-4 Shewmr4_0658 -164 5.1 TACCTCTTAGGGGGTA
Shewanella sp MR-7 Shewmr7_3364 -164 5.1 TACCTCTTAGGGGGTA
Shewanella baltica OS155 Sbal_0793 -146 5.1 TACCTCTTAGGGGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0621 -188 5.1 TACCCCTTATGGGGTA
Shewanella amazonensis SB2B Sama_0647 -160 4.9 TACCCATTAAGTGGTA
Shewanella loihica PV-4 Shew_0843 -161 5.1 TACCCCTTATGGGGTA
Shewanella pealeana ATCC 700345 Spea_0830 -157 5 TACCTCCTATGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0885 -159 4.7 TACCTCCAACGAGGTA
Shewanella piezotolerans WP3 swp_3960 -263 5.1 TACCCCTTATGGGGTA
Shewanella sediminis HAW-EB3 Ssed_0930 -161 4.9 TACCCCTAAGGGGGTA
Shewanella woodyi ATCC 51908 Swoo_0971 -160 5.2 TACCCCTTATGAGGTA
Position: -102
Score: 5
Sequence: TACCCCATAAGGGGTA
Locus tag: Shew_0844
Shew_0844 -102 5 TACCCCATAAGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2)
Shewanella oneidensis MR-1 SO3980 -95 5.2 TACCCCCTAAGAGGTA
Shewanella putrefaciens CN-32 Sputcn32_0685 -95 5.2 TACCTCCTAAGAGGTA
Shewanella sp W3-18-1 Sputw3181_3486 -95 5.2 TACCTCCTAAGAGGTA
Shewanella sp ANA-3 Shewana3_0658 -77 5.2 TACCCCCTAAGAGGTA
Shewanella sp MR-4 Shewmr4_0659 -77 5.2 TACCCCCTAAGAGGTA
Shewanella sp MR-7 Shewmr7_3363 -77 5.2 TACCCCCTAAGAGGTA
Shewanella baltica OS155 Sbal_0794 -95 5.2 TACCCCCTAAGAGGTA
Shewanella frigidimarina NCIMB 400 Sfri_0622 -111 5 TACCCCATAAGGGGTA
Shewanella amazonensis SB2B Sama_0648 -101 5 TACCACTTAATGGGTA
Shewanella loihica PV-4 Shew_0844 -102 5 TACCCCATAAGGGGTA
Shewanella pealeana ATCC 700345 Spea_0831 -101 4.9 TACCTCATAGGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0886 -98 4.7 TACCTCGTTGGAGGTA
Shewanella piezotolerans WP3 swp_3958 -96 5 TACCCCATAAGGGGTA
Shewanella sediminis HAW-EB3 Ssed_0931 -100 5 TACCCCCTTAGGGGTA
Shewanella woodyi ATCC 51908 Swoo_0972 -100 5 TACCTCATAAGGGGTA
Position: -21
Score: 4.8
Sequence: TACCTATAAAGGGATA
Locus tag: Shew_0918
Shew_0918 -21 4.8 TACCTATAAAGGGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrF
Ortholog function: Decaheme cytochrome c MtrF
Shewanella oneidensis MR-1 SO1659 -80 4.9 TACCACTTTATAAGTA
Shewanella putrefaciens CN-32 Sputcn32_1380 -77 4.9 TACCACTTTATAAGTA
Shewanella sp W3-18-1 Sputw3181_2721 -77 4.9 TACCACTTTATAAGTA
Shewanella sp ANA-3 Shewana3_2787 -77 4.9 TACCACTTTATAAGTA
Shewanella sp MR-4 Shewmr4_2613 -78 4.9 TACCACTTTATAAGTA
Shewanella sp MR-7 Shewmr7_2680 -78 4.9 TACCACTTTATAAGTA
Shewanella baltica OS155 Sbal_1478 -78 4.7 TACCACTTTGTAAGTA
Shewanella frigidimarina NCIMB 400 Sfri_0913 -191 4.9 TACCTCTTTAGGGTTA
Shewanella amazonensis SB2B Sama_2228 -77 4.5 TACCACTTTATATATA
Shewanella loihica PV-4 Shew_0918 -21 4.8 TACCTATAAAGGGATA
Shewanella piezotolerans WP3 swp_0896 -18 4.8 TACCTATAAAGGGATA
Position: -153
Score: 4.5
Sequence: TACCGATTTAGGGGTA
Locus tag: Shew_1768
Shew_1768 -153 4.5 TACCGATTTAGGGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napE2
Ortholog function: Periplasmic nitrate reductase component NapE
Shewanella putrefaciens CN-32 Sputcn32_1901 -145 4.4 TACCGATTTGGAGGTA
Shewanella sp W3-18-1 Sputw3181_2107 -145 4.4 TACCGATTTGGAGGTA
Shewanella sp MR-4 Shewmr4_1840 -137 4.4 TACCGATTTGGAGGTA
Shewanella sp MR-7 Shewmr7_2137 -137 4.4 TACCGATTTGGAGGTA
Shewanella baltica OS155 Sbal_1908 -144 4.6 TACCAATTTGGAGGTA
Shewanella frigidimarina NCIMB 400 Sfri_2555 -119 4.3 TACCAATTTGTGAGTA
Shewanella amazonensis SB2B Sama_1620 -106 4.5 TACCGATTTAGGGGTA
Shewanella loihica PV-4 Shew_1768 -153 4.5 TACCGATTTAGGGGTA
Shewanella woodyi ATCC 51908 Swoo_2682 -157 4.4 TACCAAGTTAGAGGTA
Position: -107
Score: 3.8
Sequence: CCCCTCTTTTTAGGTA
Locus tag: Shew_2281
Shew_2281 -107 3.8 CCCCTCTTTTTAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3058
Ortholog function: Flavocytochrome c, flavin subunit
Shewanella oneidensis MR-1 SO3058 -77 4.3 TACCTCCTTTTAGGTG
Shewanella putrefaciens CN-32 Sputcn32_2432 -77 4.5 TACCTCTTTTTAGGTG
Shewanella sp W3-18-1 Sputw3181_1576 -77 4.5 TACCTCTTTTTAGGTG
Shewanella sp ANA-3 Shewana3_1489 -77 4.5 TACCTCTTTTTAGGTG
Shewanella loihica PV-4 Shew_2281 -107 3.8 CCCCTCTTTTTAGGTA
Shewanella halifaxensis HAW-EB4 Shal_3447 -105 4 TATCGCTAATTAGGTA
Position: -214
Score: 5.1
Sequence: TACCTCTAAAGAAATA
Locus tag: Shew_2524
Shew_2524 -214 5.1 TACCTCTAAAGAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omcA
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, OmcA
Shewanella amazonensis SB2B Sama_1209 -182 5.1 TACCCCTAAAGAAATA
Shewanella loihica PV-4 Shew_2524 -214 5.1 TACCTCTAAAGAAATA
Position: -193
Score: 5.2
Sequence: TACCCCTTTAGAAATA
Locus tag: Shew_2525
Shew_2525 -193 5.2 TACCCCTTTAGAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrC
Ortholog function: Surface localized decaheme cytochrome c lipoprotein, MtrC
Shewanella oneidensis MR-1 SO1778 -204 5.2 TACCTCTTTAGAAATA
Shewanella putrefaciens CN-32 Sputcn32_1478 -204 5.2 TACCTCTTTAGAAATA
Shewanella sp W3-18-1 Sputw3181_2623 -204 5.2 TACCTCTTTAGAAATA
Shewanella sp ANA-3 Shewana3_2676 -203 5.2 TACCTCTTTAGAAATA
Shewanella sp MR-4 Shewmr4_2510 -203 5.2 TACCTCTTTAGAAATA
Shewanella sp MR-7 Shewmr7_2578 -203 5.2 TACCTCTTTAGAAATA
Shewanella baltica OS155 Sbal_1589 -204 5.2 TACCTCTTTAGAAATA
Shewanella frigidimarina NCIMB 400 Sfri_2637 -178 4.9 TACCTCTTTATTAATA
Shewanella amazonensis SB2B Sama_1208 -192 4.9 TACCCCTTTTGAAATA
-133 5 TACCCCCTATGAGGTA
Shewanella loihica PV-4 Shew_2525 -193 5.2 TACCCCTTTAGAAATA
Shewanella pealeana ATCC 700345 Spea_2698 -195 5.2 TACCTCTTTAGAAATA
Shewanella halifaxensis HAW-EB4 Shal_2784 -194 5.2 TACCTCTTTAGAAATA
Shewanella piezotolerans WP3 swp_3278 -193 5.1 TACCTCTTTATAAATA
Shewanella sediminis HAW-EB3 Ssed_1525 -205 5 TACCCCTTTATAAATA
Shewanella woodyi ATCC 51908 Swoo_3125 -218 5 TACCCCTTTATAAATA
Position: -248
Score: 5
Sequence: TACCTCCAAAGAGATA
Locus tag: Shew_2580
Shew_2580 -248 5 TACCTCCAAAGAGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3141
Ortholog function: Nonaheme cytochrome c lipoprotein
Shewanella oneidensis MR-1 SO3140.1 -205 4.3 TACTTCCAAAGATATA
Shewanella oneidensis MR-1 SO3140.2 -205 4.3 TACTTCCAAAGATATA
Shewanella putrefaciens CN-32 Sputcn32_2507 -219 4.9 TACCTCTAAAGTAATA
Shewanella sp W3-18-1 Sputw3181_1501 -219 4.4 TATCTCTAAAGTAATA
Shewanella sp ANA-3 Shewana3_1409 -216 4.6 TACCTCCAAAGATATA
Shewanella sp MR-4 Shewmr4_1356 -215 4.6 TACCTCCAAAGATATA
Shewanella baltica OS155 Sbal_2843 -217 4.4 TACCTCCAAAGTATTA
Shewanella loihica PV-4 Shew_2580 -248 5 TACCTCCAAAGAGATA
Shewanella woodyi ATCC 51908 Swoo_4517 -161 5.1 TACCTCTTTAGTAGTA
Position: -166
Score: 5
Sequence: TACCACTTTAGAGATA
Locus tag: Shew_2655
Shew_2655 -166 5 TACCACTTTAGAGATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Shew_2655
Ortholog function: Conserved hypothetical protein
Shewanella loihica PV-4 Shew_2655 -166 5 TACCACTTTAGAGATA
-152 4.3 TACCTCTAATTCAGTA
Shewanella pealeana ATCC 700345 Spea_3233 -165 4.5 TACCTACTTGTAGGTA
-151 4.4 TATCCCTAAATTAGTA
Shewanella halifaxensis HAW-EB4 Shal_3305 -165 4.3 TACCTATTTGTGTGTA
-151 4.6 TACCTCTAAATCGGTA
Shewanella piezotolerans WP3 swp_1107 -165 5 TACCCATTTATAGGTA
-151 4.9 TACCTCTAAATTAGTA
Shewanella sediminis HAW-EB3 Ssed_3185 -176 4.6 TACTACTTTAGGAGTA
-162 5 TACCTCCTTATAAGTA
Shewanella woodyi ATCC 51908 Swoo_3303 -164 5 TACCACTTTATAGGTA
-150 4.8 TACCACTTAATTAGTA
Position: -268
Score: 4.5
Sequence: TACCTCTTTGTGATTA
Locus tag: Shew_3112
Shew_3112 -268 4.5 TACCTCTTTGTGATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fccA
Ortholog function: Fumarate reductase flavoprotein subunit (EC 1.3.99.1)
Shewanella oneidensis MR-1 SO0970 -43 4.5 TATCCCTTATTAAGTA
Shewanella putrefaciens CN-32 Sputcn32_0905 -42 4.7 TAACCCTTATTAAGTA
Shewanella sp W3-18-1 Sputw3181_3267 -42 4.7 TAACCCTTATTAAGTA
Shewanella sp ANA-3 Shewana3_3318 -43 4.7 TAACCCTTATTAAGTA
Shewanella sp MR-4 Shewmr4_0808 -43 4.7 TAACCCTTATTAAGTA
Shewanella sp MR-7 Shewmr7_3215 -43 4.7 TAACCCTTATTAAGTA
Shewanella baltica OS155 Sbal_0859 -42 4.7 TAACCCTTATTAAGTA
Shewanella frigidimarina NCIMB 400 Sfri_3690 -313 4.6 TACCTCTTTATAACTA
Shewanella amazonensis SB2B Sama_0611 -35 5.2 TACCTCTTTATAAGTA
Shewanella loihica PV-4 Shew_3112 -268 4.5 TACCTCTTTGTGATTA
Shewanella pealeana ATCC 700345 Spea_0722 -101 4.5 TACCTCAAAGTGAGTA
Shewanella halifaxensis HAW-EB4 Shal_0776 -101 4.3 TACCTCGAATTGAGTA
Position: -123
Score: 4.9
Sequence: TACCTCTCAAGAGGTA
Locus tag: Shew_3205
Shew_3205 -123 4.9 TACCTCTCAAGAGGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napD
Ortholog function: Periplasmic nitrate reductase component NapD
Shewanella oneidensis MR-1 SO0849 -119 4.9 TACCTCTTGTGAGGTA
Shewanella putrefaciens CN-32 Sputcn32_3147 -116 4.9 TACCTCTTGTGAGGTA
Shewanella sp W3-18-1 Sputw3181_0796 -116 4.9 TACCTCTTGTGAGGTA
Shewanella sp ANA-3 Shewana3_3429 -118 4.8 TACCTCTTGCGAGGTA
Shewanella sp MR-4 Shewmr4_0705 -118 4.9 TACCTCTTGTGAGGTA
Shewanella sp MR-7 Shewmr7_3317 -118 4.9 TACCTCTTGTGAGGTA
Shewanella baltica OS155 Sbal_3510 -119 4.9 TACCTCTTGTGAGGTA
Shewanella amazonensis SB2B Sama_2982 -105 4.8 TACCTCCTAGTGGGTA
Shewanella loihica PV-4 Shew_3205 -123 4.9 TACCTCTCAAGAGGTA
Shewanella pealeana ATCC 700345 Spea_0624 -118 4.9 TACCCCTTGTGAGGTA
Shewanella halifaxensis HAW-EB4 Shal_0716 -119 4.7 TACCCCTTGCGAGGTA
Shewanella piezotolerans WP3 swp_4456 -111 4.9 TACCCCTTGTGAGGTA
Shewanella sediminis HAW-EB3 Ssed_3956 -132 4.7 TACCTCTTGTTGGGTA
Shewanella woodyi ATCC 51908 Swoo_4109 -124 5 TACCCCTTACTAGGTA
Position: -261
Score: 4.9
Sequence: TACCCCTTTGGGAGTA
Locus tag: Shew_3260
Shew_3260 -261 4.9 TACCCCTTTGGGAGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp35
Ortholog function: Outer membrane porin, predicted
Shewanella oneidensis MR-1 SO3896 -255 5.2 TACCTCTTTAGTGGTA
Shewanella sp ANA-3 Shewana3_0733 -255 5.1 TACCTCTTTAGTAGTA
Shewanella sp MR-4 Shewmr4_3228 -255 5.1 TACCTCTTTAGTAGTA
Shewanella sp MR-7 Shewmr7_0761 -255 5.1 TACCTCTTTAGTAGTA
Shewanella baltica OS155 Sbal_3570 -256 4.9 TACCACTTAAGTAGTA
Shewanella frigidimarina NCIMB 400 Sfri_0503 -243 4.3 CATCCCTAAAGAGGTA
Shewanella loihica PV-4 Shew_3260 -261 4.9 TACCCCTTTGGGAGTA
Shewanella pealeana ATCC 700345 Spea_0589 -260 4.6 CACCTCTTTATAGATA
Shewanella halifaxensis HAW-EB4 Shal_0676 -260 4.8 TACTCCTTTAGGGATA
Shewanella piezotolerans WP3 swp_4514 -260 5.1 TACCCCTTTAGGGATA
Shewanella sediminis HAW-EB3 Ssed_4009 -263 4.1 TACTTCGTTCTAGGTA
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