Propagation of Fnr regulog to Shewanella loihica PV-4
| Source regulog: | Fnr - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | |
| Biological process: | Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella loihica PV-4 |
| Orthologous TF(s) | Shew_1993, Shew_3233 |
| Regulated genes | 38 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -186
Score: 5 Sequence: TTGAACTGGATCAT
Locus tag: Shew_0053
|
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| Shew_0053 | -186 | 5 | TTGAACTGGATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fdhD | ||||
| Ortholog function: Formate dehydrogenase chain D (EC 1.2.1.2) | ||||
| Shewanella amazonensis SB2B | Sama_3619 | -182 | 4.8 | TTGAAGTGGATCAT |
| Shewanella baltica OS155 | Sbal_4130 | -183 | 5 | TTGAACTAGATCAT |
| Shewanella halifaxensis HAW-EB4 | Shal_0099 | -177 | 5.2 | TTGAACTAGATCAA |
| Shewanella loihica PV-4 | Shew_0053 | -186 | 5 | TTGAACTGGATCAT |
| Shewanella oneidensis MR-1 | SO4503 | -330 | 4.8 | TTGAAGTGGATCAT |
| Shewanella pealeana ATCC 700345 | Spea_4143 | -179 | 5.2 | TTGAACTAGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0343 | -183 | 4.8 | TTGAAGTAGATCAT |
| Shewanella sediminis HAW-EB3 | Ssed_4427 | -149 | 5 | TTGAGCTGGATCAT |
| Shewanella sp ANA-3 | Shewana3_3910 | -183 | 4.8 | TTGAGGTGGATCAT |
| Shewanella sp MR-4 | Shewmr4_3714 | -183 | 4.8 | TTGAGGTGGATCAT |
| Shewanella sp MR-7 | Shewmr7_3785 | -183 | 4.8 | TTGAGGTGGATCAT |
| Shewanella sp W3-18-1 | Sputw3181_3865 | -127 | 4.8 | TTGAAGTAGATCAT |
| Shewanella woodyi ATCC 51908 | Swoo_4819 | -159 | 5.1 | TTGAGCTAGATCAT |
|
Position: -123
Score: 4.5 Sequence: ATGATCCAGTTCAA
Locus tag: Shew_0054
|
||||
| Shew_0054 | -123 | 4.5 | ATGATCCAGTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4504 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Shewanella amazonensis SB2B | Sama_3618 | -109 | 4.2 | ATGATCCACTTCAA |
| Shewanella baltica OS155 | Sbal_4131 | -226 | 4.2 | GTGATCTGCCGCAA |
| -132 | 4.8 | ATGATCTAGTTCAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0052 | -225 | 4.6 | GTGATCTGGCGCAA |
| -121 | 3.9 | GGGATCTAGTTCAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0100 | -120 | 5 | TTGATCTAGTTCAA |
| Shewanella loihica PV-4 | Shew_0054 | -123 | 4.5 | ATGATCCAGTTCAA |
| Shewanella oneidensis MR-1 | SO4504 | -126 | 4.2 | ATGATCCACTTCAA |
| Shewanella pealeana ATCC 700345 | Spea_4142 | -119 | 5 | TTGATCTAGTTCAA |
| Shewanella piezotolerans WP3 | swp_5034 | -118 | 5 | TTGATCTAGTTCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0342 | -230 | 4.1 | GTGATCTATCGCAA |
| -136 | 4.5 | ATGATCTACTTCAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_4426 | -119 | 4.8 | ATGATCCAGCTCAA |
| Shewanella sp ANA-3 | Shewana3_3911 | -127 | 4.5 | ATGATCCACCTCAA |
| Shewanella sp MR-4 | Shewmr4_3715 | -127 | 4.5 | ATGATCCACCTCAA |
| Shewanella sp MR-7 | Shewmr7_3786 | -127 | 4.5 | ATGATCCACCTCAA |
| Shewanella sp W3-18-1 | Sputw3181_3866 | -136 | 4.5 | ATGATCTACTTCAA |
| Shewanella woodyi ATCC 51908 | Swoo_4818 | -144 | 5.2 | ATGATCTAGCTCAA |
|
Position: -175
Score: 3.9 Sequence: TTGTTTAAGATCAA
Locus tag: Shew_0086
|
||||
| Shew_0086 | -175 | 3.9 | TTGTTTAAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: etfD | ||||
| Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) | ||||
| Shewanella amazonensis SB2B | Sama_3523 | -184 | 4.6 | TTGGTCTGGATCAT |
| Shewanella loihica PV-4 | Shew_0086 | -175 | 3.9 | TTGTTTAAGATCAA |
| Shewanella oneidensis MR-1 | SO4453 | -198 | 4.3 | TTGATCAGGTTCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0388 | -198 | 4.2 | TTGGCCTAGATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_4403 | -177 | 4.6 | TTGCTCAAGATCAA |
| Shewanella sp ANA-3 | Shewana3_0273 | -202 | 4.3 | TTGATCCGCTTCAA |
| Shewanella sp MR-4 | Shewmr4_0272 | -202 | 4.3 | TTGATCCGCTTCAA |
| Shewanella sp MR-7 | Shewmr7_3749 | -202 | 4.3 | TTGATCCGCTTCAA |
| Shewanella sp W3-18-1 | Sputw3181_0242 | -198 | 4.2 | TTGGCCTAGATCAA |
| Shewanella woodyi ATCC 51908 | Swoo_4794 | -162 | 4.5 | TTGCTCAGGATCAA |
|
Position: -154
Score: 4.2 Sequence: TTGATCTTAAACAA
Locus tag: Shew_0087
|
||||
| Shew_0087 | -154 | 4.2 | TTGATCTTAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaA | ||||
| Ortholog function: Molybdenum cofactor biosynthesis protein MoaA | ||||
| Shewanella amazonensis SB2B | Sama_3524 | -145 | 4.6 | ATGATCCAGACCAA |
| Shewanella baltica OS155 | Sbal_0284 | -152 | 3.9 | GTGATCTAGGTTAA |
| Shewanella loihica PV-4 | Shew_0087 | -154 | 4.2 | TTGATCTTAAACAA |
| Shewanella oneidensis MR-1 | SO4452 | -185 | 4.5 | TTGAACCTGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0389 | -152 | 4.5 | TTGATCTAGGCCAA |
| Shewanella sediminis HAW-EB3 | Ssed_4402 | -186 | 4.9 | TTGATCTTGAGCAA |
| Shewanella sp ANA-3 | Shewana3_0274 | -152 | 4.7 | TTGAAGCGGATCAA |
| Shewanella sp MR-4 | Shewmr4_0273 | -152 | 4.7 | TTGAAGCGGATCAA |
| Shewanella sp MR-7 | Shewmr7_3748 | -152 | 4.7 | TTGAAGCGGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_0243 | -152 | 4.5 | TTGATCTAGGCCAA |
| Shewanella woodyi ATCC 51908 | Swoo_4793 | -187 | 4.6 | TTGATCCTGAGCAA |
|
Position: -106
Score: 4.2 Sequence: TTGCGCTAGCGCAA
Locus tag: Shew_0088
|
||||
| Shew_0088 | -106 | 4.2 | TTGCGCTAGCGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaB | ||||
| Ortholog function: Molybdenum cofactor biosynthesis protein MoaB | ||||
| Shewanella amazonensis SB2B | Sama_3525 | -145 | 4.6 | ATGATCCAGACCAA |
| Shewanella loihica PV-4 | Shew_0088 | -154 | 4.2 | TTGATCTTAAACAA |
| Shewanella sediminis HAW-EB3 | Ssed_4401 | -186 | 4.9 | TTGATCTTGAGCAA |
| Shewanella woodyi ATCC 51908 | Swoo_4792 | -187 | 4.6 | TTGATCCTGAGCAA |
|
Position: -317
Score: 4.9 Sequence: GTGATCTTGATCAA
Locus tag: Shew_0125
|
||||
| Shew_0125 | -317 | 4.9 | GTGATCTTGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: coxB | ||||
| Ortholog function: Cytochrome c oxidase, polypeptide II (EC 1.9.3.1) | ||||
| Shewanella amazonensis SB2B | Sama_3483 | -314 | 4.9 | GTGATCTTGATCAA |
| Shewanella baltica OS155 | Sbal_0154 | -313 | 4.9 | GTGATCTTGATCAA |
| Shewanella denitrificans OS217 | Sden_3517 | -312 | 4.9 | GTGATCTTGATCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0258 | -317 | 4.9 | GTGATCTTGATCAA |
| -209 | 4.8 | ATGATCCAAATCAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0258 | -372 | 4.9 | GTGATCTTGATCAA |
| Shewanella loihica PV-4 | Shew_0125 | -317 | 4.9 | GTGATCTTGATCAA |
| Shewanella oneidensis MR-1 | SO4606 | -313 | 4.9 | GTGATCTTGATCAA |
| Shewanella pealeana ATCC 700345 | Spea_3999 | -349 | 4.9 | GTGATCTTGATCAA |
| -246 | 4.2 | TAGATCCTGATCAA | ||
| Shewanella piezotolerans WP3 | swp_4823 | -366 | 4.9 | GTGATCTTGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3782 | -305 | 4.9 | GTGATCTTGATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_0198 | -339 | 5.2 | TTGATCTTGATCAA |
| Shewanella sp ANA-3 | Shewana3_3991 | -314 | 4.9 | GTGATCTTGATCAA |
| Shewanella sp MR-4 | Shewmr4_3791 | -314 | 4.9 | GTGATCTTGATCAA |
| Shewanella sp MR-7 | Shewmr7_3864 | -313 | 4.9 | GTGATCTTGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_0133 | -305 | 4.9 | GTGATCTTGATCAA |
| Shewanella woodyi ATCC 51908 | Swoo_0178 | -337 | 4.9 | GTGATCTTGATCAA |
|
Position: -122
Score: 3.9 Sequence: GTGATCGACGTCAA
Locus tag: Shew_0332
|
||||
| Shew_0332 | -122 | 3.9 | GTGATCGACGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: frdC2 | ||||
| Ortholog function: Fumarate reductase, cytochrome b subunit | ||||
| Shewanella halifaxensis HAW-EB4 | Shal_3899 | -134 | 3.9 | GTGATCTACGTCTA |
| Shewanella loihica PV-4 | Shew_0332 | -122 | 3.9 | GTGATCGACGTCAA |
| Shewanella pealeana ATCC 700345 | Spea_0392 | -134 | 4.4 | GTGATCTTGATCTA |
| Shewanella piezotolerans WP3 | swp_0428 | -134 | 4.1 | GTGATCTTGCTCTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3441 | -108 | 3.8 | GTGAGGTAGCTCAC |
| Shewanella sediminis HAW-EB3 | Ssed_4116 | -122 | 4.3 | GTGATCTGCTTCAA |
| Shewanella sp W3-18-1 | Sputw3181_0498 | -108 | 3.8 | GTGAGGTAGCTCAC |
| Shewanella woodyi ATCC 51908 | Swoo_0507 | -134 | 4.4 | GTGATGTGGTTCAA |
|
Position: -94
Score: 4.1 Sequence: TTGATCTATCTCAC
Locus tag: Shew_0333
|
||||
| Shew_0333 | -94 | 4.1 | TTGATCTATCTCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: frdC1 | ||||
| Ortholog function: Fumarate reductase, cytochrome b subunit | ||||
| Shewanella baltica OS155 | Sbal_3936 | -101 | 4.6 | TTGATCTGGCTCAC |
| Shewanella halifaxensis HAW-EB4 | Shal_3898 | -134 | 3.9 | GTGATCTACGTCTA |
| Shewanella loihica PV-4 | Shew_0333 | -122 | 3.9 | GTGATCGACGTCAA |
| Shewanella oneidensis MR-1 | SO0397 | -105 | 4.3 | TTGATCTAACTCAG |
| Shewanella pealeana ATCC 700345 | Spea_0393 | -134 | 4.4 | GTGATCTTGATCTA |
| Shewanella piezotolerans WP3 | swp_0429 | -134 | 4.1 | GTGATCTTGCTCTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3440 | -108 | 3.8 | GTGAGGTAGCTCAC |
| Shewanella sediminis HAW-EB3 | Ssed_4115 | -100 | 4.3 | TTGATCTGCCTCAC |
| Shewanella sp ANA-3 | Shewana3_0402 | -103 | 4.3 | TTGATCTAACTCAG |
| Shewanella sp MR-4 | Shewmr4_0403 | -103 | 4.3 | TTGATCTAACTCAG |
| Shewanella sp MR-7 | Shewmr7_3622 | -102 | 4.3 | TTGATCTAACTCAG |
| Shewanella sp W3-18-1 | Sputw3181_0499 | -108 | 3.8 | GTGAGGTAGCTCAC |
| Shewanella woodyi ATCC 51908 | Swoo_0508 | -134 | 4.4 | GTGATGTGGTTCAA |
|
Position: -125
Score: 5.3 Sequence: TTGATCTAGCTCAA
Locus tag: Shew_0613
|
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| Shew_0613 | -125 | 5.3 | TTGATCTAGCTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydD | ||||
| Ortholog function: Transport ATP-binding protein CydD | ||||
| Shewanella amazonensis SB2B | Sama_2679 | -133 | 4.7 | TTGATCCAGCGCAA |
| Shewanella denitrificans OS217 | Sden_0860 | -222 | 4.4 | CTGAGCTAAATCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_3589 | -229 | 5.3 | TTGATCTAGCTCAA |
| Shewanella loihica PV-4 | Shew_0613 | -125 | 5.3 | TTGATCTAGCTCAA |
| Shewanella pealeana ATCC 700345 | Spea_3494 | -181 | 5.3 | TTGATCTAGCTCAA |
| Shewanella sediminis HAW-EB3 | Ssed_3849 | -135 | 5.3 | TTGATCTAGCTCAA |
| Shewanella woodyi ATCC 51908 | Swoo_0710 | -145 | 5.3 | TTGATCTAGCTCAA |
|
Position: -153
Score: 4.2 Sequence: TTGATATGAATCAC
Locus tag: Shew_0743
|
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| Shew_0743 | -153 | 4.2 | TTGATATGAATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltP | ||||
| Ortholog function: Sodium/glutamate symport protein | ||||
| Shewanella halifaxensis HAW-EB4 | Shal_0827 | -107 | 4.3 | GTGATACAGATCAT |
| Shewanella loihica PV-4 | Shew_0743 | -153 | 4.2 | TTGATATGAATCAC |
| Shewanella oneidensis MR-1 | SO0922 | -171 | 4 | GTGACATAGATCAT |
| Shewanella pealeana ATCC 700345 | Spea_0775 | -108 | 4.9 | GTGATGTAGATCAT |
| Shewanella piezotolerans WP3 | swp_4258 | -108 | 4.3 | GTGATACAGATCAT |
| Shewanella putrefaciens CN-32 | Sputcn32_0863 | -131 | 4.7 | GTGATATAGATCAT |
| Shewanella sediminis HAW-EB3 | Ssed_0862 | -169 | 4.2 | TTGATATTGATCAC |
| Shewanella sp ANA-3 | Shewana3_3362 | -122 | 4.7 | GTGATATAGATCAT |
| Shewanella sp MR-4 | Shewmr4_0764 | -122 | 4.7 | GTGATATAGATCAT |
| Shewanella sp MR-7 | Shewmr7_3259 | -122 | 4.7 | GTGATATAGATCAT |
| Shewanella sp W3-18-1 | Sputw3181_3312 | -131 | 4.7 | GTGATATAGATCAT |
|
Position: -132
Score: 4.5 Sequence: TTGAGGCAGATCAT
Locus tag: Shew_0843
|
||||
| Shew_0843 | -132 | 4.5 | TTGAGGCAGATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narQ | ||||
| Ortholog function: Nitrate/nitrite sensor protein NarQ (EC 2.7.3.-) | ||||
| Shewanella amazonensis SB2B | Sama_0647 | -131 | 4.2 | TTGCACAAGATCAA |
| Shewanella baltica OS155 | Sbal_0793 | -117 | 4.9 | TTGCGCTAGATCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0621 | -159 | 4.5 | TTGCGCCAGATCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0885 | -130 | 4.6 | TTGCGGTAGATCAA |
| Shewanella loihica PV-4 | Shew_0843 | -132 | 4.5 | TTGAGGCAGATCAT |
| Shewanella oneidensis MR-1 | SO3981 | -170 | 4.9 | TTGCGCTAGATCAA |
| Shewanella pealeana ATCC 700345 | Spea_0830 | -128 | 4.6 | TTGCGGTAGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0684 | -133 | 4.5 | TTGCGCCAGATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_0930 | -132 | 4.5 | ATGCGGTAGATCAA |
| Shewanella sp ANA-3 | Shewana3_0657 | -134 | 4.9 | TTGCGCTAGATCAA |
| Shewanella sp MR-4 | Shewmr4_0658 | -135 | 4.9 | TTGCGCTAGATCAA |
| Shewanella sp MR-7 | Shewmr7_3364 | -135 | 4.9 | TTGCGCTAGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_3487 | -133 | 4.5 | TTGCGCCAGATCAA |
| Shewanella woodyi ATCC 51908 | Swoo_0971 | -131 | 4.6 | TTGCGGTAGATCAA |
|
Position: -129
Score: 4.8 Sequence: ATGATCTGCCTCAA
Locus tag: Shew_0844
|
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| Shew_0844 | -129 | 4.8 | ATGATCTGCCTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrfA | ||||
| Ortholog function: Nitrite reductase, cytochrome c(552) (EC 1.7.2.2) | ||||
| Shewanella amazonensis SB2B | Sama_0648 | -128 | 4.3 | TTGATCTTGTGCAA |
| Shewanella baltica OS155 | Sbal_0794 | -122 | 5 | TTGATCTAGCGCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0622 | -138 | 4.9 | TTGATCTGGCGCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0886 | -125 | 4.6 | TTGATCTACCGCAA |
| Shewanella loihica PV-4 | Shew_0844 | -129 | 4.8 | ATGATCTGCCTCAA |
| Shewanella oneidensis MR-1 | SO3980 | -122 | 5 | TTGATCTAGCGCAA |
| Shewanella pealeana ATCC 700345 | Spea_0831 | -128 | 4.6 | TTGATCTACCGCAA |
| Shewanella piezotolerans WP3 | swp_3958 | -123 | 4.6 | TTGATCTAACGCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0685 | -122 | 4.9 | TTGATCTGGCGCAA |
| Shewanella sediminis HAW-EB3 | Ssed_0931 | -127 | 4.4 | TTGATCTACCGCAT |
| Shewanella sp ANA-3 | Shewana3_0658 | -104 | 5 | TTGATCTAGCGCAA |
| Shewanella sp MR-4 | Shewmr4_0659 | -104 | 5 | TTGATCTAGCGCAA |
| Shewanella sp MR-7 | Shewmr7_3363 | -104 | 5 | TTGATCTAGCGCAA |
| Shewanella sp W3-18-1 | Sputw3181_3486 | -122 | 4.9 | TTGATCTGGCGCAA |
| Shewanella woodyi ATCC 51908 | Swoo_0972 | -127 | 4.6 | TTGATCTACCGCAA |
|
Position: -158
Score: 4 Sequence: TTGACTTAGATCAC
Locus tag: Shew_1036
|
||||
| Shew_1036 | -158 | 4 | TTGACTTAGATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyaB | ||||
| Ortholog function: Adenylate cyclase (EC 4.6.1.1) | ||||
| Shewanella amazonensis SB2B | Sama_0861 | -98 | 4.3 | TTGATTCAGATCAC |
| Shewanella baltica OS155 | Sbal_1182 | -97 | 4.6 | TTGATCCAGATCAC |
| Shewanella denitrificans OS217 | Sden_2784 | -153 | 5 | TTGATCTAGATCAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2947 | -154 | 4.6 | TTGATCTAAATCAC |
| Shewanella halifaxensis HAW-EB4 | Shal_1065 | -95 | 4 | TTGACTTAGATCAC |
| Shewanella loihica PV-4 | Shew_1036 | -158 | 4 | TTGACTTAGATCAC |
| Shewanella oneidensis MR-1 | SO1329 | -158 | 4.6 | TTGATCCAGATCAC |
| Shewanella pealeana ATCC 700345 | Spea_1019 | -96 | 4 | TTGACTTAGATCAC |
| Shewanella piezotolerans WP3 | swp_3798 | -94 | 4 | TTGACTTAGATCAC |
| Shewanella putrefaciens CN-32 | Sputcn32_1140 | -97 | 4.6 | TTGATCCAGATCAC |
| Shewanella sp ANA-3 | Shewana3_3045 | -158 | 4.6 | TTGATCCAGATCAC |
| Shewanella sp MR-4 | Shewmr4_2867 | -158 | 4.6 | TTGATCCAGATCAC |
| Shewanella sp MR-7 | Shewmr7_2949 | -158 | 4.6 | TTGATCCAGATCAC |
| Shewanella sp W3-18-1 | Sputw3181_3024 | -97 | 4.6 | TTGATCCAGATCAC |
|
Position: -121
Score: 4.1 Sequence: TTGATCCGCTTCAT
Locus tag: Shew_1069
|
||||
| Shew_1069 | -121 | 4.1 | TTGATCCGCTTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcp | ||||
| Ortholog function: Hydroxylamine reductase (EC 1.7.-.-) | ||||
| Shewanella amazonensis SB2B | Sama_0895 | -109 | 4.5 | ATGATCTGCTTCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3609 | -121 | 4.5 | GTGATGTGGCTCAT |
| Shewanella loihica PV-4 | Shew_1069 | -121 | 4.1 | TTGATCCGCTTCAT |
| Shewanella sediminis HAW-EB3 | Ssed_1165 | -120 | 4.4 | TTGATCTACTTCAT |
| Shewanella woodyi ATCC 51908 | Swoo_1260 | -121 | 4.7 | TTGATCTGTCTCAA |
|
Position: -341
Score: 4.9 Sequence: TTGATTTGAATCAA
Position: -51
Score: 4.4 Sequence: TTGATGGGGATCTA
Locus tag: Shew_1302
|
||||
| Shew_1302 | -341 | 4.9 | TTGATTTGAATCAA | |
| -51 | 4.4 | TTGATGGGGATCTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydA | ||||
| Ortholog function: Cytochrome d ubiquinol oxidase, subunit I (EC 1.10.3.-) | ||||
| Shewanella amazonensis SB2B | Sama_2349 | -334 | 4.3 | TTGATTTACGTCAA |
| Shewanella baltica OS155 | Sbal_2979 | -342 | 4.9 | TTGATTTGCATCAA |
| Shewanella denitrificans OS217 | Sden_1274 | -153 | 5.3 | TTGATCTAAATCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1142 | -338 | 4.2 | ATGATTGTGATCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1381 | -336 | 4.9 | TTGATTTGAATCAA |
| -51 | 4.4 | TTGATGGGGATCTA | ||
| Shewanella loihica PV-4 | Shew_1302 | -341 | 4.9 | TTGATTTGAATCAA |
| -51 | 4.4 | TTGATGGGGATCTA | ||
| Shewanella oneidensis MR-1 | SO3286 | -338 | 4.9 | TTGATTTGAATCAA |
| Shewanella pealeana ATCC 700345 | Spea_1318 | -337 | 4.9 | TTGATTTGAATCAA |
| -51 | 4.4 | TTGATGGGGATCTA | ||
| Shewanella piezotolerans WP3 | swp_1469 | -332 | 4.9 | TTGATTTGAATCAA |
| -51 | 4.4 | TTGATGGGGATCTA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2641 | -339 | 4.9 | TTGATTTGAATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_3118 | -336 | 4.9 | TTGATTTGAATCAA |
| Shewanella sp ANA-3 | Shewana3_1241 | -338 | 4.9 | TTGATTTGAATCAA |
| Shewanella sp MR-4 | Shewmr4_1239 | -338 | 4.9 | TTGATTTGAATCAA |
| Shewanella sp MR-7 | Shewmr7_1310 | -338 | 4.9 | TTGATTTGAATCAA |
| Shewanella sp W3-18-1 | Sputw3181_1366 | -339 | 4.9 | TTGATTTGAATCAA |
| Shewanella woodyi ATCC 51908 | Swoo_1565 | -334 | 4.9 | TTGATTTGAATCAA |
| -51 | 4.2 | ATGATGGGGATCTA | ||
|
Position: -220
Score: 4.7 Sequence: TTGAAGCGGATCAA
Position: -160
Score: 4.8 Sequence: TTGATCCAGCTCAT
Position: -99
Score: 4.2 Sequence: TTGACATACATCAA
Locus tag: Shew_1765
|
||||
| Shew_1765 | -220 | 4.7 | TTGAAGCGGATCAA | |
| -160 | 4.8 | TTGATCCAGCTCAT | ||
| -99 | 4.2 | TTGACATACATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hyaA | ||||
| Ortholog function: Ni/Fe-hydrogenase, small chain precursor (EC 1.12.5.1) | ||||
| Shewanella amazonensis SB2B | Sama_1679 | -107 | 4.2 | TTGACGTGTATCAA |
| Shewanella baltica OS155 | Sbal_1889 | -163 | 3.8 | TAGATCTACGTCAT |
| -103 | 4.9 | TTGATATACATCAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2103 | -164 | 4.4 | TTGATCAACATCAT |
| -103 | 4.7 | TTGATTTATATCAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2261 | -208 | 3.8 | GTGATCTCCATCAC |
| -148 | 5.2 | ATGATCTAGCTCAA | ||
| -87 | 3.9 | TTGACGCATATCAA | ||
| Shewanella loihica PV-4 | Shew_1765 | -220 | 4.7 | TTGAAGCGGATCAA |
| -160 | 4.8 | TTGATCCAGCTCAT | ||
| -99 | 4.2 | TTGACATACATCAA | ||
| Shewanella oneidensis MR-1 | SO2099 | -101 | 4.8 | TTGATATGCATCAA |
| Shewanella pealeana ATCC 700345 | Spea_2033 | -147 | 5.2 | ATGATCTAGCTCAA |
| -86 | 3.8 | TTGACTCATATCAA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_2088 | -103 | 4.9 | TTGATATACATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_1908 | -158 | 4.6 | ATGATCTAGTTCAT |
| -98 | 4.5 | TTGATGTGAGTCAA | ||
| Shewanella sp ANA-3 | Shewana3_1880 | -162 | 4.3 | TAGATCTGCATCAT |
| -102 | 4.8 | TTGATATGCATCAA | ||
| Shewanella sp MR-4 | Shewmr4_1822 | -162 | 4.3 | TAGATCTGCATCAT |
| -102 | 4.8 | TTGATATGCATCAA | ||
| Shewanella sp MR-7 | Shewmr7_2155 | -162 | 4.3 | TAGATCTGCATCAT |
| -102 | 4.8 | TTGATATGCATCAA | ||
| Shewanella sp W3-18-1 | Sputw3181_1924 | -103 | 4.9 | TTGATATACATCAA |
|
Position: -181
Score: 5.1 Sequence: ATGATCCAGATCAA
Locus tag: Shew_1768
|
||||
| Shew_1768 | -181 | 5.1 | ATGATCCAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napE2 | ||||
| Ortholog function: Periplasmic nitrate reductase component NapE | ||||
| Shewanella amazonensis SB2B | Sama_1620 | -133 | 5.4 | ATGATCTGGATCAA |
| Shewanella baltica OS155 | Sbal_1908 | -171 | 5.4 | ATGATCTGGATCAA |
| Shewanella denitrificans OS217 | Sden_1495 | -69 | 5.1 | CTGATCTAGATCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2555 | -146 | 5.3 | ATGATCTAGATCAT |
| Shewanella loihica PV-4 | Shew_1768 | -181 | 5.1 | ATGATCCAGATCAA |
| Shewanella pealeana ATCC 700345 | Spea_2429 | -191 | 5.4 | ATGATCTGGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1901 | -172 | 5.4 | ATGATCTGGATCAA |
| Shewanella sp ANA-3 | Shewana3_1898 | -164 | 5.4 | ATGATCTGGATCAA |
| Shewanella sp MR-4 | Shewmr4_1840 | -164 | 5.4 | ATGATCTGGATCAA |
| Shewanella sp MR-7 | Shewmr7_2137 | -164 | 5.4 | ATGATCTGGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_2107 | -172 | 5.4 | ATGATCTGGATCAA |
|
Position: -160
Score: 4.5 Sequence: GTGATGTGAATCAT
Locus tag: Shew_1835
|
||||
| Shew_1835 | -160 | 4.5 | GTGATGTGAATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ydhD | ||||
| Ortholog function: Glutaredoxin-related protein | ||||
| Shewanella amazonensis SB2B | Sama_1919 | -169 | 4.5 | GTGATGTGAATCAT |
| Shewanella baltica OS155 | Sbal_1783 | -152 | 4.5 | GTGATGTGAATCAT |
| Shewanella denitrificans OS217 | Sden_1640 | -133 | 4.5 | GTGATGTGCATCAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1748 | -151 | 4.5 | GTGATGTGAATCAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2335 | -150 | 3.9 | GTGAAGTGTATCAT |
| Shewanella loihica PV-4 | Shew_1835 | -160 | 4.5 | GTGATGTGAATCAT |
| Shewanella oneidensis MR-1 | SO2880 | -153 | 4.5 | GTGATGTGAATCAT |
| Shewanella pealeana ATCC 700345 | Spea_1964 | -150 | 3.9 | GTGAAGTGTATCAT |
| Shewanella piezotolerans WP3 | swp_2753 | -149 | 3.9 | GTGAAGTGTATCAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1688 | -152 | 4.5 | GTGATGTGAATCAT |
| Shewanella sp ANA-3 | Shewana3_1640 | -153 | 4.5 | GTGATGTGAATCAT |
| Shewanella sp MR-4 | Shewmr4_1573 | -153 | 4.5 | GTGATGTGAATCAT |
| Shewanella sp MR-7 | Shewmr7_1648 | -153 | 4.5 | GTGATGTGAATCAT |
| Shewanella sp W3-18-1 | Sputw3181_2337 | -152 | 4.5 | GTGATGTGAATCAT |
|
Position: -217
Score: 5.6 Sequence: TTGATCTGGATCAA
Locus tag: Shew_1985
|
||||
| Shew_1985 | -217 | 5.6 | TTGATCTGGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccoN | ||||
| Ortholog function: Cytochrome c oxidase, cbb3-type, subunit CcoN (EC 1.9.3.1) | ||||
| Shewanella amazonensis SB2B | Sama_1791 | -218 | 5.3 | TTGATCCAGATCAA |
| Shewanella baltica OS155 | Sbal_2201 | -212 | 5.6 | TTGATCTAGATCAA |
| -169 | 4.5 | TTGATATTGCTCAA | ||
| Shewanella baltica OS155 | Sbal_4487 | -212 | 5.6 | TTGATCTAGATCAA |
| -169 | 4.5 | TTGATATTGCTCAA | ||
| Shewanella denitrificans OS217 | Sden_1851 | -220 | 5.3 | TTGATCCAGATCAA |
| -178 | 5.1 | TTGATGTAGCTCAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2010 | -224 | 5.6 | TTGATCTAGATCAA |
| -182 | 4.3 | TTGACTTAGCTCAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2197 | -217 | 5.6 | TTGATCTAGATCAA |
| -174 | 4.9 | TTGATATAGCTCAA | ||
| Shewanella loihica PV-4 | Shew_1985 | -217 | 5.6 | TTGATCTGGATCAA |
| -174 | 4.5 | TTGATATTGCTCAA | ||
| Shewanella oneidensis MR-1 | SO2364 | -212 | 5.6 | TTGATCTAGATCAA |
| -169 | 4.2 | TTGACATGGCTCAA | ||
| -106 | 4.3 | TTGACATAGCTCAA | ||
| Shewanella pealeana ATCC 700345 | Spea_2214 | -215 | 5.6 | TTGATCTAGATCAA |
| -172 | 4.9 | TTGATATAGCTCAA | ||
| Shewanella piezotolerans WP3 | swp_2572 | -217 | 5.6 | TTGATCTAGATCAA |
| -174 | 4.3 | TTGACATAGCTCAA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1959 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 3.9 | TTGACATTGCTCAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_2211 | -216 | 5.6 | TTGATCTAGATCAA |
| -173 | 4.3 | TTGACATAGCTCAA | ||
| Shewanella sp ANA-3 | Shewana3_2107 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 4.2 | TTGACATGGCTCAA | ||
| Shewanella sp MR-4 | Shewmr4_2006 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 4.2 | TTGACATGGCTCAA | ||
| Shewanella sp MR-7 | Shewmr7_1969 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 4.2 | TTGACATGGCTCAA | ||
| Shewanella sp W3-18-1 | Sputw3181_2046 | -210 | 5.6 | TTGATCTAGATCAA |
| -167 | 3.9 | TTGACATTGCTCAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_2425 | -216 | 5.6 | TTGATCTAGATCAA |
| -173 | 4.3 | TTGACATAGCTCAA | ||
|
Position: -72
Score: 4.6 Sequence: TTGATCTAAAACAA
Locus tag: Shew_1994
|
||||
| Shew_1994 | -72 | 4.6 | TTGATCTAAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uspE | ||||
| Ortholog function: Universal stress protein E | ||||
| Shewanella amazonensis SB2B | Sama_1800 | -74 | 4.6 | TTGATCTAAAACAA |
| Shewanella baltica OS155 | Sbal_2210 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella baltica OS155 | Sbal_4496 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella denitrificans OS217 | Sden_1842 | -69 | 4.2 | TTGATATAGCTCAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2019 | -87 | 4.6 | ATGATCTATCTCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2206 | -73 | 4.6 | TTGATCTAAAACAA |
| Shewanella loihica PV-4 | Shew_1994 | -72 | 4.6 | TTGATCTAAAACAA |
| Shewanella oneidensis MR-1 | SO2355 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella pealeana ATCC 700345 | Spea_2223 | -74 | 4.6 | TTGATCTAAAACAA |
| Shewanella piezotolerans WP3 | swp_2581 | -71 | 4.6 | TTGATCTAAAACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1950 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella sediminis HAW-EB3 | Ssed_2220 | -71 | 4.6 | TTGATCTGAAACAA |
| Shewanella sp ANA-3 | Shewana3_2116 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella sp MR-4 | Shewmr4_2015 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella sp MR-7 | Shewmr7_1960 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella sp W3-18-1 | Sputw3181_2055 | -72 | 4.9 | TTGATCTAGAACAA |
| Shewanella woodyi ATCC 51908 | Swoo_2416 | -70 | 4.9 | TTGATCTAAAGCAA |
|
Position: -94
Score: 4.7 Sequence: TTGAGATAGATCAT
Locus tag: Shew_2050
|
||||
| Shew_2050 | -94 | 4.7 | TTGAGATAGATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pykA | ||||
| Ortholog function: Pyruvate kinase (EC 2.7.1.40) | ||||
| Shewanella amazonensis SB2B | Sama_1814 | -96 | 4.7 | TTGAGATAGATCAT |
| Shewanella halifaxensis HAW-EB4 | Shal_1947 | -95 | 4.7 | TTGAGTTAGATCAT |
| Shewanella loihica PV-4 | Shew_2050 | -94 | 4.7 | TTGAGATAGATCAT |
| Shewanella pealeana ATCC 700345 | Spea_2337 | -95 | 4.7 | TTGAGTTAGATCAT |
| Shewanella piezotolerans WP3 | swp_2388 | -95 | 4.7 | TTGAGATAGATCAT |
| Shewanella sediminis HAW-EB3 | Ssed_2068 | -95 | 4.7 | TTGCGCTAGATCAT |
| Shewanella woodyi ATCC 51908 | Swoo_2541 | -95 | 4.7 | TTGCGCTAGATCAT |
|
Position: -122
Score: 5.4 Sequence: ATGATCTGGATCAA
Locus tag: Shew_2449
|
||||
| Shew_2449 | -122 | 5.4 | ATGATCTGGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdD | ||||
| Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) | ||||
| Shewanella amazonensis SB2B | Sama_1275 | -114 | 4.6 | ATGATCCATATCAA |
| Shewanella baltica OS155 | Sbal_1665 | -122 | 5.2 | ATGATCTGGATCAT |
| Shewanella denitrificans OS217 | Sden_1419 | -166 | 5.5 | ATGATCTAGATCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2443 | -106 | 5.4 | ATGATCTGGATCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2692 | -123 | 5.4 | ATGATCTGGATCAA |
| Shewanella loihica PV-4 | Shew_2449 | -122 | 5.4 | ATGATCTGGATCAA |
| Shewanella oneidensis MR-1 | SO2834 | -269 | 4 | TTGATTTTAAGCAT |
| -121 | 5.2 | ATGATCTGGATCAT | ||
| Shewanella pealeana ATCC 700345 | Spea_2619 | -123 | 5.4 | ATGATCTGGATCAA |
| Shewanella piezotolerans WP3 | swp_3165 | -122 | 5.4 | ATGATCTGGATCAA |
| -62 | 3.8 | TTGATTTAAAGTAA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1540 | -203 | 3.9 | ATGACTTAGGTCAA |
| -121 | 5.2 | ATGATCTGGATCAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1600 | -122 | 5 | ATGATCGAGATCAA |
| Shewanella sp ANA-3 | Shewana3_2603 | -121 | 5.2 | ATGATCTGGATCAT |
| Shewanella sp MR-4 | Shewmr4_2441 | -121 | 5.2 | ATGATCTGGATCAT |
| Shewanella sp MR-7 | Shewmr7_2511 | -121 | 5.2 | ATGATCTGGATCAT |
| Shewanella sp W3-18-1 | Sputw3181_2559 | -203 | 3.9 | ATGACTTAGGTCAA |
| -121 | 5.2 | ATGATCTGGATCAT | ||
| Shewanella woodyi ATCC 51908 | Swoo_3049 | -122 | 4.8 | ATGATCAGGATCAA |
|
Position: -241
Score: 4.6 Sequence: GTGATCTAGATCAC
Position: -89
Score: 4.9 Sequence: TTGATCTAGATAAA
Locus tag: Shew_2518
|
||||
| Shew_2518 | -241 | 4.6 | GTGATCTAGATCAC | |
| -89 | 4.9 | TTGATCTAGATAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Shewanella baltica OS155 | Sbal_1594 | -272 | 4 | GTGATGTTGATCAC |
| -87 | 4.3 | TTGATCTAGGTAAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2777 | -275 | 4.1 | GTGATCTGTGTCAA |
| -92 | 4.3 | TTGATCTAGGTAAA | ||
| Shewanella loihica PV-4 | Shew_2518 | -241 | 4.6 | GTGATCTAGATCAC |
| -89 | 4.9 | TTGATCTAGATAAA | ||
| Shewanella oneidensis MR-1 | SO1783 | -87 | 4.3 | TTGATCTAGGTAAA |
| Shewanella pealeana ATCC 700345 | Spea_2691 | -92 | 4.3 | TTGATCTAGGTAAA |
| Shewanella piezotolerans WP3 | swp_3271 | -91 | 4.9 | TTGATCTAGATAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1480 | -89 | 4.3 | TTGATCTAGGTAAA |
| Shewanella sediminis HAW-EB3 | Ssed_1531 | -92 | 4.3 | TTGATCTAGGTAAA |
| Shewanella sp ANA-3 | Shewana3_2671 | -87 | 4.3 | TTGATCTAGGTAAA |
| Shewanella sp MR-4 | Shewmr4_2505 | -87 | 4.3 | TTGATCTAGGTAAA |
| Shewanella sp MR-7 | Shewmr7_2573 | -87 | 4.3 | TTGATCTAGGTAAA |
| Shewanella sp W3-18-1 | Sputw3181_2621 | -89 | 4.3 | TTGATCTAGGTAAA |
|
Position: -318
Score: 4.9 Sequence: TTTATCTAGATCAA
Position: -166
Score: 4.6 Sequence: GTGATCTAGATCAC
Locus tag: Shew_2519
|
||||
| Shew_2519 | -318 | 4.9 | TTTATCTAGATCAA | |
| -166 | 4.6 | GTGATCTAGATCAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrD | ||||
| Ortholog function: Periplasmic decaheme cytochrome c, MtrD | ||||
| Shewanella amazonensis SB2B | Sama_1213 | -377 | 3.8 | TTAATCTCAATCAT |
| Shewanella baltica OS155 | Sbal_1593 | -362 | 4.2 | TTTACCTAGATCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2778 | -363 | 4.2 | TTTACCTAGATCAA |
| Shewanella loihica PV-4 | Shew_2519 | -318 | 4.9 | TTTATCTAGATCAA |
| -166 | 4.6 | GTGATCTAGATCAC | ||
| Shewanella oneidensis MR-1 | SO1782 | -397 | 4.2 | TTTACCTAGATCAA |
| Shewanella pealeana ATCC 700345 | Spea_2692 | -344 | 4.2 | TTTACCTAGATCAA |
| Shewanella piezotolerans WP3 | swp_3272 | -366 | 4.9 | TTTATCTAGATCAA |
| -181 | 3.8 | GTGACGTAGATCAC | ||
| Shewanella sediminis HAW-EB3 | Ssed_1530 | -349 | 4.2 | TTTACCTAGATCAA |
| Shewanella sp ANA-3 | Shewana3_2672 | -353 | 4.2 | TTTACCTAGATCAA |
| Shewanella sp MR-4 | Shewmr4_2506 | -353 | 4.2 | TTTACCTAGATCAA |
| Shewanella sp MR-7 | Shewmr7_2574 | -353 | 4.2 | TTTACCTAGATCAA |
|
Position: 0
Score: 3.9 Sequence: ATGATGAAGATGAA
Locus tag: Shew_2521
|
||||
| Shew_2521 | 0 | 3.9 | ATGATGAAGATGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrF | ||||
| Ortholog function: Decaheme cytochrome c, MtrF | ||||
| Shewanella amazonensis SB2B | Sama_1211 | -377 | 3.8 | TTAATCTCAATCAT |
| Shewanella baltica OS155 | Sbal_1591 | -362 | 4.2 | TTTACCTAGATCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2780 | -363 | 4.2 | TTTACCTAGATCAA |
| Shewanella loihica PV-4 | Shew_2521 | -318 | 4.9 | TTTATCTAGATCAA |
| -166 | 4.6 | GTGATCTAGATCAC | ||
| Shewanella oneidensis MR-1 | SO1780 | -397 | 4.2 | TTTACCTAGATCAA |
| Shewanella pealeana ATCC 700345 | Spea_2694 | -344 | 4.2 | TTTACCTAGATCAA |
| Shewanella piezotolerans WP3 | swp_3274 | -366 | 4.9 | TTTATCTAGATCAA |
| -181 | 3.8 | GTGACGTAGATCAC | ||
| Shewanella sediminis HAW-EB3 | Ssed_1528 | -349 | 4.2 | TTTACCTAGATCAA |
| Shewanella sp ANA-3 | Shewana3_2674 | -353 | 4.2 | TTTACCTAGATCAA |
| Shewanella sp MR-4 | Shewmr4_2508 | -353 | 4.2 | TTTACCTAGATCAA |
| Shewanella sp MR-7 | Shewmr7_2576 | -353 | 4.2 | TTTACCTAGATCAA |
|
Position: -104
Score: 5.2 Sequence: TTGATTTGGATCAA
Locus tag: Shew_2554
|
||||
| Shew_2554 | -104 | 5.2 | TTGATTTGGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: Outer membrane protein W precursor | ||||
| Shewanella loihica PV-4 | Shew_2554 | -104 | 5.2 | TTGATTTGGATCAA |
|
Position: -80
Score: 4.5 Sequence: TTGTTTTAGATCAA
Locus tag: Shew_2655
|
||||
| Shew_2655 | -80 | 4.5 | TTGTTTTAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Shew_2655 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Shewanella halifaxensis HAW-EB4 | Shal_3305 | -79 | 4.5 | TTGTTTTAGATCAA |
| Shewanella loihica PV-4 | Shew_2655 | -80 | 4.5 | TTGTTTTAGATCAA |
| Shewanella pealeana ATCC 700345 | Spea_3233 | -79 | 4.5 | TTGTTTTAGATCAA |
| Shewanella piezotolerans WP3 | swp_1107 | -128 | 4.1 | ATGATCTTGCTCAC |
| -79 | 4.8 | TTGTTCTGGATCAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_3185 | -139 | 4.2 | TTGATCTTAATCAC |
| -90 | 4.2 | TTGTTTCAGATCAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_3303 | -78 | 4.5 | TTGTTCCAGATCAA |
|
Position: -33
Score: 5.3 Sequence: TTGATTTAGATCAA
Locus tag: Shew_2873
|
||||
| Shew_2873 | -33 | 5.3 | TTGATTTAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bfr2 | ||||
| Ortholog function: Bacterioferritin | ||||
| Shewanella amazonensis SB2B | Sama_2530 | -41 | 5.4 | TTGATGTAGATCAA |
| Shewanella baltica OS155 | Sbal_0932 | -44 | 5.3 | TTGATTTAGATCAA |
| Shewanella denitrificans OS217 | Sden_0990 | -36 | 4.6 | TTGATTTGGATCAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_0957 | -37 | 4.5 | TTGATCGAGATCAC |
| Shewanella halifaxensis HAW-EB4 | Shal_3179 | -33 | 5.2 | TTGATATAGATCAA |
| Shewanella loihica PV-4 | Shew_2873 | -33 | 5.3 | TTGATTTAGATCAA |
| Shewanella oneidensis MR-1 | SO1111 | -43 | 5.3 | TTGATTTAGATCAA |
| Shewanella pealeana ATCC 700345 | Spea_3095 | -33 | 5.2 | TTGATATAGATCAA |
| Shewanella piezotolerans WP3 | swp_1175 | -35 | 5.2 | TTGATATAGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0948 | -44 | 5.3 | TTGATTTAGATCAA |
| Shewanella sediminis HAW-EB3 | Ssed_2230 | -31 | 5.2 | TTGATATAGATCAA |
| Shewanella sp ANA-3 | Shewana3_0946 | -43 | 5.3 | TTGATTTAGATCAA |
| Shewanella sp MR-4 | Shewmr4_0944 | -42 | 5.3 | TTGATTTAGATCAA |
| Shewanella sp MR-7 | Shewmr7_0982 | -43 | 5.3 | TTGATTTAGATCAA |
| Shewanella sp W3-18-1 | Sputw3181_3228 | -44 | 5.3 | TTGATTTAGATCAA |
| Shewanella woodyi ATCC 51908 | Swoo_3608 | -85 | 5.4 | TTGATGTAGATCAA |
|
Position: -162
Score: 5.3 Sequence: ATGATCTAGATCAT
Locus tag: Shew_3135
|
||||
| Shew_3135 | -162 | 5.3 | ATGATCTAGATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lldP | ||||
| Ortholog function: L-lactate permease | ||||
| Shewanella amazonensis SB2B | Sama_2439 | -132 | 4.9 | ATGATCTGTATCAA |
| Shewanella baltica OS155 | Sbal_1354 | -177 | 5.3 | ATGATCTAGATCAT |
| Shewanella loihica PV-4 | Shew_3135 | -162 | 5.3 | ATGATCTAGATCAT |
| Shewanella piezotolerans WP3 | swp_1813 | -376 | 4.7 | TTGATCCACATCAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1272 | -175 | 5.3 | ATGATCTAGATCAT |
| Shewanella sediminis HAW-EB3 | Ssed_0907 | -375 | 5 | TTGATCTGAATCAT |
| Shewanella sp ANA-3 | Shewana3_2904 | -177 | 5.3 | ATGATCTAGATCAT |
| Shewanella sp W3-18-1 | Sputw3181_2834 | -175 | 5.3 | ATGATCTAGATCAT |
|
Position: -282
Score: 4.3 Sequence: TAGATCTTGATCAT
Locus tag: Shew_3155
|
||||
| Shew_3155 | -282 | 4.3 | TAGATCTTGATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrfX | ||||
| Ortholog function: Nitrite reductase, predicted component | ||||
| Shewanella loihica PV-4 | Shew_3155 | -282 | 4.3 | TAGATCTTGATCAT |
|
Position: -150
Score: 4.7 Sequence: TTGATCTCGATCTA
Locus tag: Shew_3205
|
||||
| Shew_3205 | -150 | 4.7 | TTGATCTCGATCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napD | ||||
| Ortholog function: Periplasmic nitrate reductase component NapD | ||||
| Shewanella baltica OS155 | Sbal_3510 | -146 | 4.7 | TTGATCCGGATCGA |
| Shewanella halifaxensis HAW-EB4 | Shal_0716 | -241 | 4 | TTAATGTAGCGCAA |
| -146 | 4.1 | TTGATCTCGGTCTA | ||
| Shewanella loihica PV-4 | Shew_3205 | -150 | 4.7 | TTGATCTCGATCTA |
| Shewanella oneidensis MR-1 | SO0849 | -146 | 4.2 | TTGATCCCGATCGA |
| Shewanella pealeana ATCC 700345 | Spea_0624 | -240 | 3.8 | TTAATATAGCGCAA |
| -169 | 4.9 | GTGAACTAGATCAA | ||
| -145 | 4.1 | TTGATCTCGGTCTA | ||
| Shewanella piezotolerans WP3 | swp_4456 | -233 | 4 | TTAATGTAGCGCAA |
| -138 | 4.1 | TTGATCTTGGTCGA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3147 | -143 | 4.2 | TTGATCCCGATCGA |
| Shewanella sediminis HAW-EB3 | Ssed_3956 | -159 | 4.5 | ATGATCTCGATCTA |
| Shewanella sp ANA-3 | Shewana3_3429 | -145 | 4.2 | TTGATCCCGATCGA |
| Shewanella sp MR-4 | Shewmr4_0705 | -145 | 4.2 | TTGATCCCGATCGA |
| Shewanella sp MR-7 | Shewmr7_3317 | -145 | 4.2 | TTGATCCCGATCGA |
| Shewanella sp W3-18-1 | Sputw3181_0796 | -143 | 4.2 | TTGATCCCGATCGA |
| Shewanella woodyi ATCC 51908 | Swoo_4109 | -151 | 4.6 | TTGATCTTGATCGA |
|
Position: 0
Score: 4.2 Sequence: ATGAGCCAGGTCAA
Locus tag: Shew_3207
|
||||
| Shew_3207 | 0 | 4.2 | ATGAGCCAGGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napG | ||||
| Ortholog function: Periplasmic nitrate reductase, ferredoxin-type protein NapG | ||||
| Shewanella halifaxensis HAW-EB4 | Shal_0714 | -241 | 4 | TTAATGTAGCGCAA |
| -146 | 4.1 | TTGATCTCGGTCTA | ||
| Shewanella loihica PV-4 | Shew_3207 | -150 | 4.7 | TTGATCTCGATCTA |
| Shewanella pealeana ATCC 700345 | Spea_0622 | -240 | 3.8 | TTAATATAGCGCAA |
| -169 | 4.9 | GTGAACTAGATCAA | ||
| -145 | 4.1 | TTGATCTCGGTCTA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3149 | -143 | 4.2 | TTGATCCCGATCGA |
| Shewanella sediminis HAW-EB3 | Ssed_3958 | -159 | 4.5 | ATGATCTCGATCTA |
| Shewanella sp ANA-3 | Shewana3_3431 | -145 | 4.2 | TTGATCCCGATCGA |
| Shewanella sp W3-18-1 | Sputw3181_0794 | -143 | 4.2 | TTGATCCCGATCGA |
|
Position: -87
Score: 4.4 Sequence: TTGATCGAGATCAG
Locus tag: Shew_3247
|
||||
| Shew_3247 | -87 | 4.4 | TTGATCGAGATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sama_0549 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Shewanella amazonensis SB2B | Sama_0549 | -135 | 4.6 | TTGATTCACATCAA |
| -75 | 4.3 | TTGATCAAGATCAG | ||
| Shewanella baltica OS155 | Sbal_3565 | -75 | 4.3 | TTGATCAAGATCAG |
| Shewanella frigidimarina NCIMB 400 | Sfri_0507 | -75 | 4.3 | TTGATCAAGATCAG |
| Shewanella halifaxensis HAW-EB4 | Shal_0680 | -75 | 4 | TTGACTAAGATCAA |
| Shewanella loihica PV-4 | Shew_3247 | -87 | 4.4 | TTGATCGAGATCAG |
| Shewanella pealeana ATCC 700345 | Spea_0593 | -138 | 4.2 | ATGATCTACAACAT |
| -78 | 4.2 | TTGACTGAGATCAA | ||
| Shewanella piezotolerans WP3 | swp_4510 | 0 | 4.4 | TTGACCAAGATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0777 | -75 | 4.2 | TTGATCAGGATCAG |
| Shewanella sediminis HAW-EB3 | Ssed_4003 | -244 | 4.2 | TTTATCTAGATCAC |
| -87 | 4.4 | TTGATCGAGATCAG | ||
| Shewanella sp ANA-3 | Shewana3_0738 | -75 | 4.2 | TTGATCAGGATCAG |
| Shewanella sp W3-18-1 | Sputw3181_3398 | -75 | 4.2 | TTGATCAGGATCAG |
| Shewanella woodyi ATCC 51908 | Swoo_4146 | -77 | 4.4 | TTGATCGAGATCAG |
|
Position: -124
Score: 4.6 Sequence: TTGATATAGGTCAA
Locus tag: Shew_3263
|
||||
| Shew_3263 | -124 | 4.6 | TTGATATAGGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0579 | ||||
| Ortholog function: Predicted serine/threonine protein kinase | ||||
| Shewanella amazonensis SB2B | Sama_0541 | -118 | 4.9 | TTGATTTGCATCAA |
| Shewanella baltica OS155 | Sbal_0539 | -154 | 4.5 | TTGATGTAAGTCAA |
| Shewanella denitrificans OS217 | Sden_0539 | -87 | 4.5 | TTGATGCAGGTCAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3500 | -226 | 4.6 | TTGATATAGGTCAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0673 | -123 | 4.8 | TTGATGTGTATCAA |
| Shewanella loihica PV-4 | Shew_3263 | -124 | 4.6 | TTGATATAGGTCAA |
| Shewanella oneidensis MR-1 | SO0579 | -145 | 4.9 | TTGATATAAATCAA |
| Shewanella pealeana ATCC 700345 | Spea_0586 | -123 | 4.8 | TTGATATGCATCAA |
| Shewanella piezotolerans WP3 | swp_4517 | -140 | 4.9 | TTGATATACATCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3298 | -152 | 4.3 | TTGATATAAGTCAA |
| Shewanella sediminis HAW-EB3 | Ssed_4012 | -185 | 4.6 | TTGATATAGGTCAA |
| Shewanella sp ANA-3 | Shewana3_0578 | -152 | 4.9 | TTGATATAAATCAA |
| Shewanella sp MR-4 | Shewmr4_0579 | -154 | 4.9 | TTGATATAAATCAA |
| Shewanella sp MR-7 | Shewmr7_3451 | -154 | 4.9 | TTGATATAAATCAA |
| Shewanella sp W3-18-1 | Sputw3181_0643 | -152 | 4.3 | TTGATATAAGTCAA |
| Shewanella woodyi ATCC 51908 | Swoo_4155 | -226 | 4.8 | TTGATGTAGGTCAA |
|
Position: -113
Score: 5.1 Sequence: ATGATCTTGATCAA
Locus tag: Shew_3354
|
||||
| Shew_3354 | -113 | 5.1 | ATGATCTTGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nifS | ||||
| Ortholog function: Cysteine desulfurase (EC 2.8.1.7) | ||||
| Shewanella loihica PV-4 | Shew_3354 | -113 | 5.1 | ATGATCTTGATCAA |
| Shewanella pealeana ATCC 700345 | Spea_0544 | -113 | 4.7 | GTGATCTTGATCAT |
| Shewanella piezotolerans WP3 | swp_4605 | -106 | 4.7 | GTGATCTTGATCAT |
| Shewanella woodyi ATCC 51908 | Swoo_0566 | -101 | 4.7 | GTGATCTTGATCAT |
|
Position: -136
Score: 4.1 Sequence: GTGATCTGATTCAT
Locus tag: Shew_3424
|
||||
| Shew_3424 | -136 | 4.1 | GTGATCTGATTCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acnB | ||||
| Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99) | ||||
| Shewanella halifaxensis HAW-EB4 | Shal_0482 | -243 | 4.3 | ATAATTTAGATCAA |
| Shewanella loihica PV-4 | Shew_3424 | -136 | 4.1 | GTGATCTGATTCAT |
| Shewanella pealeana ATCC 700345 | Spea_0425 | -264 | 4.3 | ATAATTTAGATCAA |
| Shewanella piezotolerans WP3 | swp_4740 | -135 | 4.1 | GTGATCTGATTCAT |
| Shewanella sediminis HAW-EB3 | Ssed_0438 | -137 | 4.3 | GTGATCTGATTCAA |
| Shewanella woodyi ATCC 51908 | Swoo_0285 | -135 | 4.3 | GTGATCTGATTCAA |