Propagation of PflR regulog to Shewanella loihica PV-4
| Source regulog: | PflR - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | activator (repressor) |
| Biological process: | Formate metabolism |
| Effector: | Formate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Shewanella loihica PV-4 |
| Orthologous TF(s) | Shew_2387 |
| Regulated genes | 3 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -59
Score: 5.8 Sequence: CATCAATTTTATTGATA
Locus tag: Shew_2387
|
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| Shew_2387 | -59 | 5.8 | CATCAATTTTATTGATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pflR | ||||
| Ortholog function: Predicted transcriptional regulator for formate metabolism, LysR family | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2375 | -58 | 5.9 | TATCAATAAAATTGATA |
| Shewanella sp W3-18-1 | Sputw3181_1634 | -58 | 5.9 | TATCAATAAAATTGATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2469 | -53 | 5.8 | CATCAATTTTATTGATA |
| Shewanella amazonensis SB2B | Sama_1501 | -26 | 4.4 | CATCAATTCCTCTGATA |
| Shewanella loihica PV-4 | Shew_2387 | -59 | 5.8 | CATCAATTTTATTGATA |
| Shewanella pealeana ATCC 700345 | Spea_1675 | -63 | 5.8 | CATCAATTTTATTGATA |
| Shewanella halifaxensis HAW-EB4 | Shal_2589 | -62 | 5.8 | CATCAATTTTATTGATA |
| Shewanella piezotolerans WP3 | swp_1955 | -60 | 5.4 | CATCAAATAAATTGATA |
| Shewanella sediminis HAW-EB3 | Ssed_1712 | -61 | 5.9 | TATCAATTTTATTGATA |
| Shewanella woodyi ATCC 51908 | Swoo_2879 | -61 | 5.7 | CATCAATTTAATTGATA |
|
Position: -210
Score: 5.4 Sequence: TATCAATTTTACTGATT
Locus tag: Shew_2388
|
||||
| Shew_2388 | -210 | 5.4 | TATCAATTTTACTGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: focA | ||||
| Ortholog function: Formate efflux transporter (TC 2.A.44 family) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2376 | -163 | 5.1 | TATCAGGGTTATTGATG |
| Shewanella sp W3-18-1 | Sputw3181_1633 | -163 | 5.1 | TATCAGGGTTATTGATG |
| Shewanella frigidimarina NCIMB 400 | Sfri_2470 | -186 | 5.6 | AATCAATAATATTGATG |
| Shewanella amazonensis SB2B | Sama_1500 | -128 | 4.6 | TATAAGAAAAACTGATA |
| Shewanella loihica PV-4 | Shew_2388 | -210 | 5.4 | TATCAATTTTACTGATT |
| Shewanella pealeana ATCC 700345 | Spea_1674 | -157 | 5.2 | TATCAAGAAGTTTGATA |
| Shewanella halifaxensis HAW-EB4 | Shal_2590 | -158 | 5.1 | CATCAGGATATTTGATA |
| Shewanella piezotolerans WP3 | swp_1954 | -158 | 5.3 | TATCAAAATTAATGATA |
| Shewanella sediminis HAW-EB3 | Ssed_1710 | -161 | 5.2 | CATCAATGTACTTGATA |
| Shewanella woodyi ATCC 51908 | Swoo_2880 | -155 | 5.8 | TATCAATTATATTGATG |
|
Position: -265
Score: 5.4 Sequence: TTTCAAGTTTATTGATA
Locus tag: Shew_2389
|
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| Shew_2389 | -265 | 5.4 | TTTCAAGTTTATTGATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pflX | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2377 | -262 | 5.1 | TTTCAGATTTATTGATA |
| Shewanella sp W3-18-1 | Sputw3181_1632 | -262 | 5.1 | TTTCAGATTTATTGATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2472 | -263 | 5.1 | CATCAACTTTCTTGATA |
| Shewanella amazonensis SB2B | Sama_1499 | -242 | 4.7 | CTTCAGAAAGATTGATA |
| Shewanella loihica PV-4 | Shew_2389 | -265 | 5.4 | TTTCAAGTTTATTGATA |
| Shewanella pealeana ATCC 700345 | Spea_1673 | -275 | 5.4 | ATTCAATAATATTGATA |
| Shewanella halifaxensis HAW-EB4 | Shal_2591 | -276 | 5.2 | ATTCAAGAATATTGATA |
| Shewanella piezotolerans WP3 | swp_1953 | -275 | 4.8 | ATTCAATAACTTTGATA |
| Shewanella sediminis HAW-EB3 | Ssed_1709 | -275 | 5.2 | ATTCAAGATTATTGATA |
| Shewanella woodyi ATCC 51908 | Swoo_2882 | -274 | 5.2 | ATTCAAGAATATTGATA |