Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Dnr regulog to Shewanella loihica PV-4

Reference regulog properties
Source regulog: Dnr - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Denitrification
Effector: Nitric oxide
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella loihica PV-4
Orthologous TF(s) Shew_3331
Regulated genes 2
Built upon 5 sites [see more]
Predicted regulatory interactions in Shewanella loihica PV-4
Locus tag Position Score Sequence
Position: -131
Score: 5.8
Sequence: ACTTGACCAAAGTCAATT
Locus tag: Shew_3335
Shew_3335 -131 5.8 ACTTGACCAAAGTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirK
Ortholog function: Copper-containing nitrite reductase (EC 1.7.2.1)
Shewanella denitrificans OS217 Sden_3482 -121 6.1 ACTTGATCTAGGTCAATT
Shewanella amazonensis SB2B Sama_2681 -133 5.3 AGTTGACTTCCATCAATT
Shewanella loihica PV-4 Shew_3335 -131 5.8 ACTTGACCAAAGTCAATT
Position: -100
Score: 5.1
Sequence: ATTTGATCTCAGTCACGT
Locus tag: Shew_3399
Shew_3399 -100 5.1 ATTTGATCTCAGTCACGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nosR
Ortholog function: Nitrous oxide reductase maturation protein NosR
Shewanella denitrificans OS217 Sden_2220 -85 5.2 TATTGATCTAAGTCACTA
Shewanella loihica PV-4 Shew_3399 -100 5.1 ATTTGATCTCAGTCACGT
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