Regulog Dnr - Shewanellaceae

Properties
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Denitrification
Effector:	Nitric oxide
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 5 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By TF family - CRP
By effector - Nitric oxide
By pathway - Denitrification

Statistics of regulated genes
Genome	Genes	Operons
Shewanella oneidensis MR-1
Shewanella putrefaciens CN-32
Shewanella sp W3-18-1
Shewanella sp ANA-3
Shewanella sp MR-4
Shewanella sp MR-7
Shewanella baltica OS155
Shewanella denitrificans OS217	10	2
Shewanella frigidimarina NCIMB 400
Shewanella amazonensis SB2B	5	1
Shewanella loihica PV-4	11	2
Shewanella pealeana ATCC 700345
Shewanella halifaxensis HAW-EB4
Shewanella piezotolerans WP3
Shewanella sediminis HAW-EB3
Shewanella woodyi ATCC 51908

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																	Function

CRON 1.
nirK	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	* Shewanella denitrificans OS217 Site: position = -121 score = 6.07777 sequence = ACTTGATCTAGGTCAATT Gene: Sden_3482: Copper-containing nitrite reductase (EC 1.7.2.1)	Shewanella frigidimarina NCIMB 400	* Shewanella amazonensis SB2B Site: position = -133 score = 5.25178 sequence = AGTTGACTTCCATCAATT Gene: Sama_2681: Copper-containing nitrite reductase (EC 1.7.2.1)	* Shewanella loihica PV-4 Site: position = -131 score = 5.7771 sequence = ACTTGACCAAAGTCAATT Gene: Shew_3335: Copper-containing nitrite reductase (EC 1.7.2.1)	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Copper-containing nitrite reductase (EC 1.7.2.1)
Sden_3481	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217 Gene: Sden_3481: hypothetical protein	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_2682: hypothetical protein	Shewanella loihica PV-4 Gene: Shew_3334: hypothetical protein	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	hypothetical protein
sco	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217 Gene: Sden_3480: Putative copper metallochaperone, Sco1/SenC/PrrC family	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_2683: Putative copper metallochaperone, Sco1/SenC/PrrC family	Shewanella loihica PV-4 Gene: Shew_3333: Putative copper metallochaperone, Sco1/SenC/PrrC family	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Putative copper metallochaperone, Sco1/SenC/PrrC family
cox	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217 Gene: Sden_3479: Copper metallochaperone, bacterial analog of Cox17 protein	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_2684: Copper metallochaperone, bacterial analog of Cox17 protein	Shewanella loihica PV-4 Gene: Shew_3332: Copper metallochaperone, bacterial analog of Cox17 protein	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Copper metallochaperone, bacterial analog of Cox17 protein
Dnr	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217 Gene: Sden_3444: Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family)	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B Gene: Sama_2685: Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family)	Shewanella loihica PV-4 Gene: Shew_3331: Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family)	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family)

CRON 2.
nosR	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	* Shewanella denitrificans OS217 Site: position = -85 score = 5.16531 sequence = TATTGATCTAAGTCACTA Gene: Sden_2220: Nitrous oxide reductase maturation protein NosR	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	* Shewanella loihica PV-4 Site: position = -100 score = 5.08202 sequence = ATTTGATCTCAGTCACGT Gene: Shew_3399: Nitrous oxide reductase maturation protein NosR	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Nitrous oxide reductase maturation protein NosR
nosZ	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217 Gene: Sden_2219: Nitrous-oxide reductase (EC 1.7.99.6)	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4 Gene: Shew_3400: Nitrous-oxide reductase (EC 1.7.99.6)	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Nitrous-oxide reductase (EC 1.7.99.6)
nosD	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217 Gene: Sden_2218: Nitrous oxide reductase maturation protein NosD	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4 Gene: Shew_3401: Nitrous oxide reductase maturation protein NosD	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Nitrous oxide reductase maturation protein NosD
nosF	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217 Gene: Sden_2217: Nitrous oxide reductase maturation protein NosF (ATPase)	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4 Gene: Shew_3402: Nitrous oxide reductase maturation protein NosF (ATPase)	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Nitrous oxide reductase maturation protein NosF (ATPase)
nosY	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217 Gene: Sden_2216: Nitrous oxide reductase maturation transmembrane protein NosY	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4 Gene: Shew_3403: Nitrous oxide reductase maturation transmembrane protein NosY	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Nitrous oxide reductase maturation transmembrane protein NosY
nosL	Shewanella oneidensis MR-1	Shewanella putrefaciens CN-32	Shewanella sp W3-18-1	Shewanella sp ANA-3	Shewanella sp MR-4	Shewanella sp MR-7	Shewanella baltica OS155	Shewanella denitrificans OS217 Gene: Sden_2215: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL	Shewanella frigidimarina NCIMB 400	Shewanella amazonensis SB2B	Shewanella loihica PV-4 Gene: Shew_3404: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL	Shewanella pealeana ATCC 700345	Shewanella halifaxensis HAW-EB4	Shewanella piezotolerans WP3	Shewanella sediminis HAW-EB3	Shewanella woodyi ATCC 51908	Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Dnr - Shewanellaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --