Regulog Dnr - Shewanellaceae
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator |
| Biological process: | Denitrification |
| Effector: | Nitric oxide |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By TF family - CRP
- By effector - Nitric oxide
- By pathway - Denitrification
| Genome | Genes | Operons |
|---|---|---|
| Shewanella oneidensis MR-1 | ||
| Shewanella putrefaciens CN-32 | ||
| Shewanella sp W3-18-1 | ||
| Shewanella sp ANA-3 | ||
| Shewanella sp MR-4 | ||
| Shewanella sp MR-7 | ||
| Shewanella baltica OS155 | ||
| Shewanella denitrificans OS217 | 10 | 2 |
| Shewanella frigidimarina NCIMB 400 | ||
| Shewanella amazonensis SB2B | 5 | 1 |
| Shewanella loihica PV-4 | 11 | 2 |
| Shewanella pealeana ATCC 700345 | ||
| Shewanella halifaxensis HAW-EB4 | ||
| Shewanella piezotolerans WP3 | ||
| Shewanella sediminis HAW-EB3 | ||
| Shewanella woodyi ATCC 51908 |
| Genes | Function | ||||||||||||||||
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| CRON 1. | |||||||||||||||||
| nirK |
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Shewanella denitrificans OS217 Site: position = -121 score = 6.07777 sequence = ACTTGATCTAGGTCAATT Gene: Sden_3482: Copper-containing nitrite reductase (EC 1.7.2.1) |
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Shewanella amazonensis SB2B Site: position = -133 score = 5.25178 sequence = AGTTGACTTCCATCAATT Gene: Sama_2681: Copper-containing nitrite reductase (EC 1.7.2.1) |
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Shewanella loihica PV-4 Site: position = -131 score = 5.7771 sequence = ACTTGACCAAAGTCAATT Gene: Shew_3335: Copper-containing nitrite reductase (EC 1.7.2.1) |
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Copper-containing nitrite reductase (EC 1.7.2.1) |
| Sden_3481 |
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Gene: Sden_3481: hypothetical protein |
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Gene: Sama_2682: hypothetical protein |
Gene: Shew_3334: hypothetical protein |
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hypothetical protein |
| sco |
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Gene: Sden_3480: Putative copper metallochaperone, Sco1/SenC/PrrC family |
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Gene: Sama_2683: Putative copper metallochaperone, Sco1/SenC/PrrC family |
Gene: Shew_3333: Putative copper metallochaperone, Sco1/SenC/PrrC family |
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Putative copper metallochaperone, Sco1/SenC/PrrC family |
| cox |
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Gene: Sden_3479: Copper metallochaperone, bacterial analog of Cox17 protein |
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Gene: Sama_2684: Copper metallochaperone, bacterial analog of Cox17 protein |
Gene: Shew_3332: Copper metallochaperone, bacterial analog of Cox17 protein |
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Copper metallochaperone, bacterial analog of Cox17 protein |
| Dnr |
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Gene: Sden_3444: Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) |
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Gene: Sama_2685: Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) |
Gene: Shew_3331: Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) |
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Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) |
| CRON 2. | |||||||||||||||||
| nosR |
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Shewanella denitrificans OS217 Site: position = -85 score = 5.16531 sequence = TATTGATCTAAGTCACTA Gene: Sden_2220: Nitrous oxide reductase maturation protein NosR |
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Shewanella loihica PV-4 Site: position = -100 score = 5.08202 sequence = ATTTGATCTCAGTCACGT Gene: Shew_3399: Nitrous oxide reductase maturation protein NosR |
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Nitrous oxide reductase maturation protein NosR |
| nosZ |
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Gene: Sden_2219: Nitrous-oxide reductase (EC 1.7.99.6) |
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Gene: Shew_3400: Nitrous-oxide reductase (EC 1.7.99.6) |
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Nitrous-oxide reductase (EC 1.7.99.6) |
| nosD |
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Gene: Sden_2218: Nitrous oxide reductase maturation protein NosD |
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Gene: Shew_3401: Nitrous oxide reductase maturation protein NosD |
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Nitrous oxide reductase maturation protein NosD |
| nosF |
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Gene: Sden_2217: Nitrous oxide reductase maturation protein NosF (ATPase) |
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Gene: Shew_3402: Nitrous oxide reductase maturation protein NosF (ATPase) |
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Nitrous oxide reductase maturation protein NosF (ATPase) |
| nosY |
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Gene: Sden_2216: Nitrous oxide reductase maturation transmembrane protein NosY |
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Gene: Shew_3403: Nitrous oxide reductase maturation transmembrane protein NosY |
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Nitrous oxide reductase maturation transmembrane protein NosY |
| nosL |
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Gene: Sden_2215: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL |
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Gene: Shew_3404: Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL |
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Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |