Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Erwinia carotovora subsp. atroseptica SCRI1043

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 2 2
TF AraC Arabinose Arabinose utilization 3 4
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 14 22
TF AscG Cellobiose-6-phosphate; Beta-glucoside-6-phosphate Beta-glucosides utilization; Cellobiose utilization 5 5
TF BetI Choline Glycine betaine synthesis 2 2
TF BirA Biotin Biotin biosynthesis 3 2
TF CelR Cellobiose-6-phosphate Cellobiose utilization 1 3
TF Crp Cyclic 3',5'-AMP Carbon catabolism 194 128
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF DeoR Deoxyribonucleoside utilization 4 4
TF DgoR Galactonate Galactonate utilization 1 2
TF ECA4246 Sugar utilization 1 1
TF ExuR Galacturonate Galacturonate utilization 8 4
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 4 4
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 10 9
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 69 57
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 27 14
TF Fur Iron ion, (Fe2+) Iron homeostasis 44 65
TF GabR Gamma-aminobutyric acid Gamma-aminobutyrate utilization 2 1
TF GalR/GalS Galactose Galactose utilization 6 8
TF GcvA Glycine Glycine metabolism 2 3
TF GlpR Glycerol 3-phosphate Glycerol utilization 5 4
TF GntR Gluconate Gluconate utilization 6 7
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 6 5
TF IclR Pyruvate; Glyoxylate Glyoxylate bypass 1 1
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 3 3
TF KdgR 2-keto-3-deoxygluconate Pectin and polygalacturonate utlization 37 43
TF LacI Allolactose Lactose utilization 1 1
TF LexA DNA damage SOS response 19 17
TF LfaR Sugar utilization 2 6
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 2 2
TF MetJ S-adenosylmethionine Methionine metabolism; Methionine biosynthesis 21 17
TF MetR Homocysteine Methionine biosynthesis 10 14
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 7 5
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 2 2
TF NadR NAD NAD biosynthesis 4 2
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 4 4
TF NarP Nitrate; Nitrite Nitrate and nitrite respiration 23 15
TF NhaR Potassium ion Osmotic stress response 1 1
TF NorR Nitric oxide Nitrosative stress response 2 4
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 3 6
TF NsrR Nitric oxide Nitrosative stress response 9 5
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 10 7
TF PdhR Pyruvate Pyruvate metabolism 5 2
TF PdxR Pyridoxine/pyridoxal homeostasis 2 2
TF PurR Hypoxanthine; Guanine Purine metabolism 27 23
TF QorR Energy metabolism 2 2
TF RafR Raffinose Raffinose utilization 2 2
TF RbsR Ribose Ribose utilization 1 2
TF RhaR Rhamnose Rhamnose utilization 1 1
TF RhaS Rhamnose Rhamnose utilization 7 7
TF RhiR Rhamogalacturonate oligosaccharides Rhamnogalacturonides utilization 2 2
TF RspR L-gulonate; D-mannonate L-gulonate utilization 1 1
TF ScrR Sucrose-6-phosphate Sucrose utilization 2 2
TF SdaR Glycerate Glucarate utilization; Galactarate utilization 4 6
TF SgaR Ascorbate-6-phosphate Ascorbate utilization 2 2
TF Spro_1420 Nitrogen metabolism 2 2
TF Spro_3719 2 2
TF TalR L-talarate L-talarate utilization 2 3
TF TrpR Tryptophan Tryptophan biosynthesis 5 2
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 8 6
TF UxuR Glucuronate Glucuronate utilization 10 4
TF YE4144 Metabolite transport 1 1
TF YdcR 1 1
TF YjiR 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 6 6
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 1 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA Glycine Glycine Glycine metabolism 1 2
RNA His_leader Histidine biosynthesis 1 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA Lysine Lysine Lysine biosynthesis 1 1
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis 1 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
RNA Thr_leader Threonine biosynthesis 1 1
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA mini-ykkC Multidrug resistance 1 1
RNA ykkC-yxkD Multidrug resistance 1 1
RNA yybP-ykoY 2 2
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