Regulon of Crp in Erwinia carotovora subsp. atroseptica SCRI1043
| Regulator type: | Transcription factor |
| TF locus tag: | ECA4064 |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Regulog: | Crp - Enterobacteriales |
| Statistics of regulated genes: | |
| - Genes | 175 |
| - Operons | 105 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By TF family - CRP
- By effector - Cyclic 3',5'-AMP
- By pathway - Carbon catabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -332
Score: 3.8 Sequence: AATTTTTATCTTCCTTATATTT
Position: -262
Score: 4.9 Sequence: TTTAGTGATATCAGTCACATTA
Locus tag: ECA3081
Name: fadL Funciton: Long-chain fatty acid transport protein |
|||
|
fadL
|
Long-chain fatty acid transport protein
|
||
|
Position: -175
Score: 4.8 Sequence: CATTGTGAGCCAGATCAAATTT
Locus tag: ECA3209
Name: guaB Funciton: inosine-5'-monophosphate dehydrogenase
Locus tag: ECA3208
Name: guaA Funciton: bifunctional GMP synthase/glutamine amidotransferase protein |
|||
|
guaB
|
inosine-5'-monophosphate dehydrogenase
|
||
|
guaA
|
bifunctional GMP synthase/glutamine amidotransferase protein
|
||
|
Position: -37
Score: 5.1 Sequence: TAGTGTGATCTAAATCACTTTT
Locus tag: ECA0276
Name: aaeR Funciton: LysR-family transcriptional regulator |
|||
|
aaeR
|
LysR-family transcriptional regulator
|
||
|
Position: -95
Score: 4.2 Sequence: AGGTATGATGTTAATCATAAAT
Locus tag: ECA3039
Name: ackA Funciton: acetate kinase
Locus tag: ECA3040
Name: pta Funciton: phosphate acetyltransferase |
|||
|
ackA
|
acetate kinase
|
||
|
pta
|
phosphate acetyltransferase
|
||
|
Position: -203
Score: 5 Sequence: TATTGTGACATACATCACTTAT
Position: -97
Score: 4.1 Sequence: TTGCGTGATCAATCGCGCAAAA
Locus tag: ECA0808
Name: acs Funciton: acetyl-coenzyme A synthetase
Locus tag: ECA0807
Name: yjcH Funciton: membrane protein
Locus tag: ECA0806
Name: actP Funciton: acetate permease |
|||
|
acs
|
acetyl-coenzyme A synthetase
|
||
|
yjcH
|
membrane protein
|
||
|
actP
|
acetate permease
|
||
|
Position: -36
Score: 3.6 Sequence: AAGTATGACGGGTATATCACTT
Locus tag: ECA0118
Name: aldA Funciton: aldehyde dehydrogenase A |
|||
|
aldA
|
aldehyde dehydrogenase A
|
||
|
Position: -133
Score: 3.9 Sequence: ACCTTTGACCAGCTTCACAAAA
Locus tag: ECA2274
Name: araB Funciton: L-ribulokinase
Locus tag: ECA2275
Name: araA Funciton: L-arabinose isomerase |
|||
|
araB
|
L-ribulokinase
|
||
|
araA
|
L-arabinose isomerase
|
||
|
Position: -65
Score: 4 Sequence: TATTGTATTTTTATTCAAAATA
Locus tag: ECA0191
Name: argE Funciton: acetylornithine deacetylase |
|||
|
argE
|
acetylornithine deacetylase
|
||
|
Position: -172
Score: 4.4 Sequence: TTATGTGACTCAGGACGCATTT
Locus tag: ECA0684
Name: argR Funciton: arginine repressor |
|||
|
ECA0684
|
argR
|
arginine repressor
|
|
|
Position: -255
Score: 3.9 Sequence: CATGGCGATCGTGGTCACATAA
Position: -212
Score: 3.9 Sequence: TATTGAAATCGCACTCATATAT
Locus tag: ECA2165
Name: ascF Funciton: hypothetical protein
Locus tag: ECA2166
Name: ascB Funciton: 6-phospho-beta-glucosidase |
|||
|
ascF
|
hypothetical protein
|
||
|
ascB
|
6-phospho-beta-glucosidase
|
||
|
Position: -272
Score: 4 Sequence: ACTCGTGACTACAATCACAGTT
Locus tag: ECA0621
Name: aspA Funciton: aspartate ammonia-lyase
Locus tag: ECA0620
Name: dcuA Funciton: anaerobic C-4-dicarboxylate symporter |
|||
|
aspA
|
aspartate ammonia-lyase
|
||
|
dcuA
|
anaerobic C-4-dicarboxylate symporter
|
||
|
Position: -254
Score: 5 Sequence: TTATGTGAGTCACATCACAGAT
Locus tag: ECA4519
Name: atpI Funciton: ATP synthase subunit I
Locus tag: ECA4518
Name: atpB Funciton: ATP synthase subunit A
Locus tag: ECA4517
Name: atpE Funciton: ATP synthase subunit C
Locus tag: ECA4516
Name: atpF Funciton: ATP synthase subunit B
Locus tag: ECA4515
Name: atpH Funciton: ATP synthase subunit D
Locus tag: ECA4514
Name: atpA Funciton: ATP synthase subunit A
Locus tag: ECA4513
Name: atpG Funciton: ATP synthase subunit C
Locus tag: ECA4512
Name: atpD Funciton: ATP synthase subunit B
Locus tag: ECA4511
Name: atpC Funciton: ATP synthase epsilon subunit |
|||
|
atpI
|
ATP synthase subunit I
|
||
|
atpB
|
ATP synthase subunit A
|
||
|
atpE
|
ATP synthase subunit C
|
||
|
atpF
|
ATP synthase subunit B
|
||
|
atpH
|
ATP synthase subunit D
|
||
|
atpA
|
ATP synthase subunit A
|
||
|
atpG
|
ATP synthase subunit C
|
||
|
atpD
|
ATP synthase subunit B
|
||
|
atpC
|
ATP synthase epsilon subunit
|
||
|
Position: -267
Score: 3.8 Sequence: TAGTGTTGTTTGCATCATAAAT
Locus tag: ECA2389
Name: b1821 Funciton: hypothetical protein |
|||
|
b1821
|
hypothetical protein
|
||
|
Position: -130
Score: 4.6 Sequence: AATTGAGATACATCTCGCATTT
Position: -79
Score: 4.5 Sequence: TAAAGAGATTCCGATCACAATT
Locus tag: ECA2830
Name: cdd Funciton: cytidine deaminase |
|||
|
cdd
|
cytidine deaminase
|
||
|
Position: -104
Score: 3.9 Sequence: AAACGTGTTATTGCTCACAAGT
Locus tag: ECA2577
Name: citA Funciton: signal transduction histidine kinase regulating citrate/malate metabolism
Locus tag: ECA2578
Name: citB Funciton: response regulator receiver and unknown domain protein |
|||
|
citA
|
signal transduction histidine kinase regulating citrate/malate metabolism
|
||
|
citB
|
response regulator receiver and unknown domain protein
|
||
|
Position: -53
Score: 3.9 Sequence: AAACGTGTTAAGTATCAAATAG
Locus tag: ECA3804
Name: yacG Funciton: zinc-binding protein |
|||
|
yacG
|
zinc-binding protein
|
||
|
Position: -113
Score: 3.9 Sequence: TTTAGCGACTTTTATCACTTTT
Locus tag: ECA1294
Name: cspE Funciton: cold shock protein E |
|||
|
cspE
|
cold shock protein E
|
||
|
Position: -258
Score: 3.7 Sequence: TAAAGTGATTATCGTCTCTAAA
Locus tag: ECA3601
Name: cysQ Funciton: PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase |
|||
|
cysQ
|
PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
|
||
|
Position: -157
Score: 3.8 Sequence: TGACGTGATTCAGCTCTTGTTT
Locus tag: ECA4362
Name: dctA Funciton: C4-dicarboxylate transport protein |
|||
|
dctA
|
C4-dicarboxylate transport protein
|
||
|
Position: -96
Score: 4.4 Sequence: CAATTTGAGCCGGTTCACACTT
Locus tag: ECA0718
Name: deaD Funciton: ATP-independent RNA helicase |
|||
|
deaD
|
ATP-independent RNA helicase
|
||
|
Position: -282
Score: 4.4 Sequence: AAGTGTGAATGAATGCACAAAA
Locus tag: ECA0727
Name: deoC Funciton: 2-deoxyribose-5-phosphate aldolase
Locus tag: ECA0728
Name: deoA Funciton: thymidine phosphorylase
Locus tag: ECA0729
Name: deoB Funciton: phosphopentomutase
Locus tag: ECA0730
Name: deoD Funciton: purine nucleoside phosphorylase |
|||
|
deoC
|
2-deoxyribose-5-phosphate aldolase
|
||
|
deoA
|
thymidine phosphorylase
|
||
|
deoB
|
phosphopentomutase
|
||
|
deoD
|
purine nucleoside phosphorylase
|
||
|
Position: -164
Score: 4.2 Sequence: TTTTGTGATCCAGATTGTAGTA
Locus tag: ECA4419
Name: dgoR Funciton: GntR domain protein
Locus tag: ECA4418
Name: dgoK Funciton: 2-dehydro-3-deoxygalactonokinase
Locus tag: ECA4417
Name: dgoA2 Funciton: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase
Locus tag: ECA4416
Name: dgoA1 Funciton: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein
Locus tag: ECA4415
Name: dgoT Funciton: D-galactonate transport |
|||
|
dgoR
|
GntR domain protein
|
||
|
dgoK
|
2-dehydro-3-deoxygalactonokinase
|
||
|
dgoA2
|
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
|
||
|
dgoA1
|
Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein
|
||
|
dgoT
|
D-galactonate transport
|
||
|
Position: -194
Score: 4.1 Sequence: TTTTATGACGCAGGTCACTCTT
Locus tag: ECA3913
Name: epd Funciton: D-erythrose 4-phosphate dehydrogenase
Locus tag: ECA3912
Name: pgk Funciton: phosphoglycerate kinase |
|||
|
epd
|
D-erythrose 4-phosphate dehydrogenase
|
||
|
pgk
|
phosphoglycerate kinase
|
||
|
Position: -58
Score: 4.3 Sequence: TAGATTGATCTAAATCACAATC
Locus tag: ECA2434
Name: CKO_01286 Funciton: hypothetical protein |
|||
|
CKO_01286
|
hypothetical protein
|
||
|
Position: -208
Score: 4.8 Sequence: TTTTGTGATATCACTCAACTTT
Locus tag: ECA0644
Name: exuT Funciton: Hexuronate transporter |
|||
|
exuT
|
Hexuronate transporter
|
||
|
Position: -132
Score: 3.8 Sequence: ATTAGTGATCGTTCTCGCAACC
Position: -75
Score: 3.7 Sequence: TAAAATAATGTTAATAACAATA
Locus tag: ECA2372
Name: fadD Funciton: long-chain-fatty-acid--CoA ligase
Locus tag: ECA2371
Name: rnd Funciton: ribonuclease D |
|||
|
fadD
|
long-chain-fatty-acid--CoA ligase
|
||
|
rnd
|
ribonuclease D
|
||
|
Position: -79
Score: 4.5 Sequence: CAATATGATCCACATCAAATTT
Locus tag: ECA2596
Name: focA Funciton: formate transporter
Locus tag: ECA2597
Name: pflB Funciton: formate acetyltransferase |
|||
|
focA
|
formate transporter
|
||
|
pflB
|
formate acetyltransferase
|
||
|
Position: -180
Score: 4.1 Sequence: AAATGTGCGTGATGTCAAAATT
Locus tag: ECA2729
Name: fruB Funciton: PTS system, fructose-specific IIA/FPr component
Locus tag: ECA2728
Name: fruK Funciton: 1-phosphofructokinase
Locus tag: ECA2727
Name: fruA Funciton: PTS system, fructose-specific IIBC component |
|||
|
fruB
|
PTS system, fructose-specific IIA/FPr component
|
||
|
fruK
|
1-phosphofructokinase
|
||
|
fruA
|
PTS system, fructose-specific IIBC component
|
||
|
Position: -245
Score: 3.7 Sequence: AACTGTGATTGTAGTCACGAGT
Position: -185
Score: 3.6 Sequence: AAATGTGCAAAGGCGCACCCAT
Locus tag: ECA0623
Name: fxsA Funciton: suppressor of F plamsid exlusion of phage T7 |
|||
|
fxsA
|
suppressor of F plamsid exlusion of phage T7
|
||
|
Position: -72
Score: 3.7 Sequence: ATTCTCGCTGTAGATCACCTTT
Locus tag: ECA1389
Name: galE2 Funciton: UDP-galactose-4-epimerase
Locus tag: ECA1388
Name: galM Funciton: aldose 1-epimerase |
|||
|
galE2
|
UDP-galactose-4-epimerase
|
||
|
galM
|
aldose 1-epimerase
|
||
|
Position: -154
Score: 4 Sequence: TATAGTGAAACTGATTACATTG
Locus tag: ECA3171
Name: galT Funciton: galactose-1-phosphate uridylyltransferase
Locus tag: ECA3170
Name: galK Funciton: galactokinase |
|||
|
galT
|
galactose-1-phosphate uridylyltransferase
|
||
|
galK
|
galactokinase
|
||
|
Position: -235
Score: 5.8 Sequence: AATTGTGATGTGTATCACATAA
Locus tag: ECA2344
Name: gapA Funciton: glyceraldehyde-3-phosphate dehydrogenase
Locus tag: ECA2345
Name: yeaD Funciton: Aldose 1-epimerase |
|||
|
gapA
|
glyceraldehyde-3-phosphate dehydrogenase
|
||
|
yeaD
|
Aldose 1-epimerase
|
||
|
Position: -296
Score: 4.2 Sequence: TAGTGCGAGGTATTTCACGAAA
Position: -204
Score: 5.1 Sequence: AAATGTGATCAAACTCACCAAA
Locus tag: ECA3578
Name: garD Funciton: D-galactarate dehydratase |
|||
|
garD
|
D-galactarate dehydratase
|
||
|
Position: -21
Score: 4.8 Sequence: AAAAGTGAACGGGATCACAAAA
Locus tag: ECA1966
Name: CKO_02295 Funciton: hypothetical protein |
|||
|
CKO_02295
|
hypothetical protein
|
||
|
Position: -265
Score: 4.2 Sequence: CTTTGTGATCCCTTTCACGGTG
Locus tag: ECA0029
Name: glnA Funciton: glutamine synthetase
Locus tag: ECA0028
Name: glnL Funciton: nitrogen regulation protein NR(II)
Locus tag: ECA0027
Name: glnG Funciton: nitrogen regulation protein NR(I) |
|||
|
glnA
|
glutamine synthetase
|
||
|
glnL
|
nitrogen regulation protein NR(II)
|
||
|
glnG
|
nitrogen regulation protein NR(I)
|
||
|
Position: -148
Score: 5.1 Sequence: TTTAGTGATGCAAATCACACTT
Locus tag: ECA4165
Name: glpA Funciton: sn-glycerol-3-phosphate dehydrogenase subunit A
Locus tag: ECA4164
Name: glpB Funciton: Glycerol-3-phosphate dehydrogenase subunit B
Locus tag: ECA4163
Name: glpC Funciton: anaerobic glycerol-3-phosphate dehydrogenase subunit C |
|||
|
glpA
|
sn-glycerol-3-phosphate dehydrogenase subunit A
|
||
|
glpB
|
Glycerol-3-phosphate dehydrogenase subunit B
|
||
|
glpC
|
anaerobic glycerol-3-phosphate dehydrogenase subunit C
|
||
|
Position: -144
Score: 4.3 Sequence: TAATGTGACAACTATCATCATA
Position: -124
Score: 4.4 Sequence: TATTGTTAGCTTCATCACGCAT
Locus tag: ECA4141
Name: glpD Funciton: glycerol-3-phosphate dehydrogenase |
|||
|
glpD
|
glycerol-3-phosphate dehydrogenase
|
||
|
Position: -153
Score: 4.3 Sequence: TTTTTTGACGCGCAACACACAT
Locus tag: ECA4266
Name: glpF Funciton: facilitator for glycerol uptake
Locus tag: ECA4267
Name: glpK Funciton: glycerol kinase
Locus tag: ECA4268
Name: glpX Funciton: fructose 1,6-bisphosphatase II |
|||
|
glpF
|
facilitator for glycerol uptake
|
||
|
glpK
|
glycerol kinase
|
||
|
glpX
|
fructose 1,6-bisphosphatase II
|
||
|
Position: -253
Score: 3.7 Sequence: ATGTTTGATAAAGAGCAAAAAC
Position: -193
Score: 4.9 Sequence: AAGTGTGATTTGCATCACTAAA
Locus tag: ECA4166
Name: glpT Funciton: glycerol-3-phosphate transporter
Locus tag: ECA4167
Name: glpQ Funciton: glycerophosphoryl diester phosphodiesterase |
|||
|
glpT
|
glycerol-3-phosphate transporter
|
||
|
glpQ
|
glycerophosphoryl diester phosphodiesterase
|
||
|
Position: -21
Score: 4.8 Sequence: AAAAGTGAACGGGATCACAAAA
Locus tag: ECA1966
Name: CKO_02295 Funciton: hypothetical protein |
|||
|
CKO_02295
|
hypothetical protein
|
||
|
Position: -149
Score: 4.1 Sequence: CTTTGTGATCGCTTCCACTTTA
Position: -92
Score: 4.5 Sequence: ATATGTTATGGAAAACACAAAT
Locus tag: ECA1490
Name: lacZ Funciton: beta-D-galactosidase
Locus tag: ECA1489
Name: lacY Funciton: lactose permease |
|||
|
lacZ
|
beta-D-galactosidase
|
||
|
lacY
|
lactose permease
|
||
|
Position: -56
Score: 3.6 Sequence: TTGTGTAATACTTGTAACGCTA
Locus tag: ECA1866
Name: lpp Funciton: major outer membrane lipoprotein |
|||
|
lpp
|
major outer membrane lipoprotein
|
||
|
Position: -180
Score: 5 Sequence: TTATGTGATAAAAATCACCAAA
Locus tag: ECA1326
Name: nagB Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Locus tag: ECA1325
Name: nagA Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: ECA1324
Name: nagC Funciton: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family |
|||
|
nagB
|
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
|
||
|
nagA
|
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
|
||
|
nagC
|
N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
|
||
|
Position: -202
Score: 5 Sequence: TTTGGTGATTTTTATCACATAA
Locus tag: ECA1327
Name: nagE Funciton: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69) |
|||
|
nagE
|
PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
|
||
|
Position: -153
Score: 4 Sequence: TAAATTGATATATATCAATTTT
Locus tag: ECA1815
Name: ndh Funciton: NADH dehydrogenase (EC 1.6.99.3) |
|||
|
ndh
|
NADH dehydrogenase (EC 1.6.99.3)
|
||
|
Position: -84
Score: 3.7 Sequence: TTTTGCGTCCTTCCTCTCATTT
Position: -31
Score: 3.9 Sequence: AAATTTGGCCTGCCTCATATTT
Locus tag: ECA3183
Name: nupC Funciton: Nucleoside permease NupC |
|||
|
nupC
|
Nucleoside permease NupC
|
||
|
Position: -182
Score: 4.9 Sequence: AATTGTGACGAAGATCACTTTT
Locus tag: ECA0473
Name: nupC2 Funciton: Na+ dependent nucleoside transporter |
|||
|
nupC2
|
Na+ dependent nucleoside transporter
|
||
|
Position: -200
Score: 3.9 Sequence: TCTTATGACACAAATCACATCA
Locus tag: ECA1751
Name: ompA Funciton: outer membrane protein A |
|||
|
ompA
|
outer membrane protein A
|
||
|
Position: -177
Score: 4.3 Sequence: TGTTTTGATTTGTTTCGCCTTT
Locus tag: ECA0469
Name: osmY Funciton: Osmotically inducible protein OsmY |
|||
|
osmY
|
Osmotically inducible protein OsmY
|
||
|
Position: -81
Score: 4 Sequence: TTTTATGATTGCTATCGCGGTT
Locus tag: ECA4106
Name: pck Funciton: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) |
|||
|
pck
|
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
|
||
|
Position: -162
Score: 4.6 Sequence: AAACGTGATAGCAATCAAACAT
Locus tag: ECA1805
Name: ptsG Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69) |
|||
|
ptsG
|
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
|
||
|
Position: -130
Score: 3.7 Sequence: TTGTGCAACCTTGTTAACAAAT
Locus tag: ECA4218
Name: putP Funciton: Proline/sodium symporter PutP (TC 2.A.21.2.1) |
|||
|
putP
|
Proline/sodium symporter PutP (TC 2.A.21.2.1)
|
||
|
Position: -144
Score: 3.9 Sequence: CGGTGTGATCCTTGCCACACTT
Locus tag: ECA0441
Name: rhaS Funciton: L-rhamnose operon regulatory protein RhaS
Locus tag: ECA0442
Name: rhaR Funciton: L-rhamnose operon transcriptional activator RhaR |
|||
|
rhaS
|
L-rhamnose operon regulatory protein RhaS
|
||
|
rhaR
|
L-rhamnose operon transcriptional activator RhaR
|
||
|
Position: -193
Score: 3.6 Sequence: TTTTGTGATCCTGCCTATATCA
Locus tag: ECA0450
Name: rhaT Funciton: L-rhamnose-proton symport |
|||
|
rhaT
|
L-rhamnose-proton symport
|
||
|
Position: -195
Score: 3.7 Sequence: TTCTGTGATCGCCTCAATATTA
Locus tag: ECA3158
Name: sdaC Funciton: Serine transporter
Locus tag: ECA3159
Name: sdaB Funciton: L-serine dehydratase 1 |
|||
|
sdaC
|
Serine transporter
|
||
|
sdaB
|
L-serine dehydratase 1
|
||
|
Position: -265
Score: 4.7 Sequence: ATTCGTGATCTAAATCACTGTT
Locus tag: ECA1357
Name: sdhC Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: ECA1358
Name: sdhD Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: ECA1359
Name: sdhA Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: ECA1360
Name: sdhB Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) |
|||
|
sdhC
|
Succinate dehydrogenase cytochrome b-556 subunit
|
||
|
sdhD
|
Succinate dehydrogenase hydrophobic membrane anchor protein
|
||
|
sdhA
|
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
|
||
|
sdhB
|
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
|
||
|
Position: -214
Score: 3.9 Sequence: TTTGGTACTTAATATCACATTT
Locus tag: ECA3905
Name: serA Funciton: D-3-phosphoglycerate dehydrogenase |
|||
|
serA
|
D-3-phosphoglycerate dehydrogenase
|
||
|
Position: -159
Score: 3.9 Sequence: TAATGTGCATTCTGGCACACTT
Locus tag: ECA2735
Name: spr Funciton: predicted peptidase, outer membrane lipoprotein |
|||
|
spr
|
predicted peptidase, outer membrane lipoprotein
|
||
|
Position: -129
Score: 4.4 Sequence: ATTTGCTATATCCATCACACTT
Locus tag: ECA3792
Name: araT Funciton: putative permease of the Na+:galactoside symporter family
Locus tag: ECA3793
Name: abfA Funciton: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55) |
|||
|
araT
|
putative permease of the Na+:galactoside symporter family
|
||
|
abfA
|
Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)
|
||
|
Position: -246
Score: 4.5 Sequence: TAATGTGATTAACATCCAAAAA
Position: -196
Score: 4 Sequence: AACTGTGACCGGCTTAGCACAA
Locus tag: ECA3772
Name: CKO_00488 Funciton: LacI-family transcriptional regulator |
|||
|
CKO_00488
|
LacI-family transcriptional regulator
|
||
|
Position: -154
Score: 3.7 Sequence: TAGTATGATTCAATAAACACAA
Locus tag: ECA1162
Name: tesB Funciton: Acyl-CoA thioesterase II (EC 3.1.2.-) |
|||
|
tesB
|
Acyl-CoA thioesterase II (EC 3.1.2.-)
|
||
|
Position: -172
Score: 5.5 Sequence: TTATGTGATTAAAATCACATAA
Locus tag: ECA3796
Name: tsx Funciton: Nucleoside-specific channel-forming protein Tsx precursor |
|||
|
tsx
|
Nucleoside-specific channel-forming protein Tsx precursor
|
||
|
Position: -197
Score: 5.1 Sequence: AAAAGTGATTTAAGTCACATTT
Locus tag: ECA0185
Name: udp Funciton: Uridine phosphorylase (EC 2.4.2.3) |
|||
|
udp
|
Uridine phosphorylase (EC 2.4.2.3)
|
||
|
Position: -229
Score: 4.1 Sequence: AAAGTTGAGTGATATCACAAAA
Position: -109
Score: 3.8 Sequence: TTTTGCGATCATGACCTCACAA
Position: -86
Score: 3.7 Sequence: TCCTGTGAGATATTGCGCATAA
Locus tag: ECA0645
Name: uxaC Funciton: Uronate isomerase (EC 5.3.1.12) |
|||
|
uxaC
|
Uronate isomerase (EC 5.3.1.12)
|
||
|
Position: -223
Score: 4.7 Sequence: TTTTTTGATGCGGGTCATATTT
Position: -135
Score: 4.4 Sequence: TTTTGCGACACAGCGCACATTT
Locus tag: ECA0097
Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: ECA0096
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17) |
|||
|
xylA
|
Xylose isomerase (EC 5.3.1.5)
|
||
|
xylB
|
Xylulose kinase (EC 2.7.1.17)
|
||
|
Position: -272
Score: 4.5 Sequence: AAATATGACCCGCATCAAAAAA
Locus tag: ECA0098
Name: xylF Funciton: Xylose ABC transporter, periplasmic xylose-binding protein XylF
Locus tag: ECA0099
Name: xylG Funciton: D-xylose transport ATP-binding protein XylG
Locus tag: ECA0100
Name: xylH Funciton: Xylose ABC transporter, permease protein XylH
Locus tag: ECA0101
Name: xylR Funciton: Xylose activator XylR (AraC family) |
|||
|
xylF
|
Xylose ABC transporter, periplasmic xylose-binding protein XylF
|
||
|
xylG
|
D-xylose transport ATP-binding protein XylG
|
||
|
xylH
|
Xylose ABC transporter, permease protein XylH
|
||
|
xylR
|
Xylose activator XylR (AraC family)
|
||
|
Position: -120
Score: 4.4 Sequence: TTTTGTGAGTTCTTCCACAGAT
Position: -102
Score: 3.6 Sequence: AGATTTAACCTAATTCCCATTT
Locus tag: ECA3300
Name: cdaR Funciton: carbohydrate diacid regulator |
|||
|
ECA3300
|
cdaR
|
carbohydrate diacid regulator
|
|
|
Position: -41
Score: 4 Sequence: TAATGCGCGCCAAATCACATTC
Locus tag: ECA3010
Name: ybiT Funciton: ABC transporter ATP-binding protein |
|||
|
ybiT
|
ABC transporter ATP-binding protein
|
||
|
Position: -275
Score: 3.6 Sequence: TAGCGTGATTATGAGAACGCTA
Position: -117
Score: 3.8 Sequence: ATCTGTGATCCCTCCCGCAATC
Locus tag: ECA2185
Name: ychH Funciton: membrane protein |
|||
|
ychH
|
membrane protein
|
||
|
Position: -176
Score: 3.7 Sequence: TGACGTTATCTGCTGCACCCAT
Locus tag: ECA2410
Name: tcyP Funciton: L-cystine uptake protein TcyP |
|||
|
tcyP
|
L-cystine uptake protein TcyP
|
||
|
Position: -135
Score: 5.6 Sequence: TTATGTGATACACATCACAATT
Locus tag: ECA2343
Name: msrB Funciton: methionine sulfoxide reductase B
Locus tag: ECA2342
Name: b1777 Funciton: conserved hypothetical protein |
|||
|
msrB
|
methionine sulfoxide reductase B
|
||
|
b1777
|
conserved hypothetical protein
|
||
|
Position: -178
Score: 4 Sequence: ATTCGTGATCAGTTTGGCATTA
Position: -101
Score: 3.8 Sequence: TGTTGTTTTTTTGTTCACGAAA
Locus tag: ECA2740
Name: yejG Funciton: hypothetical protein |
|||
|
yejG
|
hypothetical protein
|
||
|
Position: -138
Score: 3.7 Sequence: TTCTGCAACGCAGTTCACAGTA
Locus tag: ECA1292
Name: yffB Funciton: FIG138056: a glutathione-dependent thiol reductase
Locus tag: ECA1291
Name: dapE Funciton: N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18) |
|||
|
yffB
|
FIG138056: a glutathione-dependent thiol reductase
|
||
|
dapE
|
N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)
|
||
|
Position: -86
Score: 4 Sequence: AAAAGCGATCAATCTCACGCTT
Locus tag: ECA3349
Name: raiA Funciton: stationary phase translation inhibitor and ribosome stability factor |
|||
|
raiA
|
stationary phase translation inhibitor and ribosome stability factor
|
||
|
Position: -199
Score: 4 Sequence: AAAATTGATTTAAGTCAAAGAT
Locus tag: ECA3288
Name: grcA Funciton: Autonomous glycyl radical cofactor |
|||
|
grcA
|
Autonomous glycyl radical cofactor
|
||
|
Position: -267
Score: 4.8 Sequence: TGTGGTGATTTTTATCACATAA
Locus tag: ECA4325
Name: ygbI Funciton: Hypothetical transcriptional regulator ygbI |
|||
|
ygbI
|
Hypothetical transcriptional regulator ygbI
|
||
|
Position: -92
Score: 4.5 Sequence: TTATGTGATAAAAATCACCACA
Locus tag: ECA4327
Name: ygbJ Funciton: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
Locus tag: ECA4328
Name: ygbK Funciton: hypothetical protein |
|||
|
ygbJ
|
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
|
||
|
ygbK
|
hypothetical protein
|
||
|
Position: -72
Score: 3.7 Sequence: ATGTGTGATGTAGATTAGTGTT
Locus tag: ECA0316
Name: elbB Funciton: sigma cross-reacting protein 27A (SCRP-27A)
Locus tag: ECA0317
Name: mtgA Funciton: monofunctional biosynthetic peptidoglycan transglycosylase |
|||
|
elbB
|
sigma cross-reacting protein 27A (SCRP-27A)
|
||
|
mtgA
|
monofunctional biosynthetic peptidoglycan transglycosylase
|
||
|
Position: -222
Score: 4.7 Sequence: AATTGTGTGCGATCTCACATAT
Locus tag: ECA0769
Name: yhjE Funciton: Inner membrane metabolite transport protein YhjE |
|||
|
yhjE
|
Inner membrane metabolite transport protein YhjE
|
||
|
Position: -228
Score: 3.8 Sequence: TTACGTTATACCCGTCATACTT
Locus tag: ECA4428
Name: yidA Funciton: Phosphatase YidA |
|||
|
yidA
|
Phosphatase YidA
|
||
|
Position: -144
Score: 3.9 Sequence: AATTGCGACCCATTACGCACAA
Locus tag: ECA4230
Name: yifB Funciton: magnesium chelatase family protein |
|||
|
yifB
|
magnesium chelatase family protein
|
||
|
Position: -57
Score: 3.7 Sequence: TATTTTTCTACAGCTAACAAAA
Locus tag: ECA1187
Name: cstA2 Funciton: Carbon starvation protein A paralog
Locus tag: ECA1188
Name: yjiX Funciton: hypothetical protein
Locus tag: ECA1189
Name: yjiA Funciton: ATP-binding protein |
|||
|
cstA2
|
Carbon starvation protein A paralog
|
||
|
yjiX
|
hypothetical protein
|
||
|
yjiA
|
ATP-binding protein
|
||
|
Position: -83
Score: 3.7 Sequence: AATCGTGATCGATTACACGTCC
Locus tag: ECA3892
Name: yjtD Funciton: RNA methyltransferase, TrmH family, group 1 |
|||
|
yjtD
|
RNA methyltransferase, TrmH family, group 1
|
||
|
Position: -226
Score: 4.4 Sequence: ATATGCGCGCTAAATCACATAA
Locus tag: ECA2258
Name: mlc Funciton: ROK family transcriptional regulatory protein |
|||
|
mlc
|
ROK family transcriptional regulatory protein
|
||
|
Position: -69
Score: 4.5 Sequence: ATTCGTGATCTGTGGCACGTAA
Locus tag: ECA2828
Name: yohJ Funciton: LrgA family protein
Locus tag: ECA2829
Name: yohK Funciton: LrgB family protein |
|||
|
yohJ
|
LrgA family protein
|
||
|
yohK
|
LrgB family protein
|
||
|
Position: -105
Score: 3.6 Sequence: TTACTCGATCCGTGTCACTTTT
Locus tag: ECA3993
Name: yrdA Funciton: carbonic anhydrase, family 3 |
|||
|
yrdA
|
carbonic anhydrase, family 3
|
||
|
Position: -68
Score: 3.7 Sequence: TATTGTTAGCCTACTTACCATA
Locus tag: ECA4236
Name: ytfQ Funciton: Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor
Locus tag: ECA4235
Name: ytfR Funciton: Putative sugar ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17)
Locus tag: ECA4234
Name: ytfT Funciton: Putative sugar ABC transport system, permease protein YtfT
Locus tag: ECA4233
Name: yjfF Funciton: Putative sugar ABC transport system, permease protein YjfF |
|||
|
ytfQ
|
Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor
|
||
|
ytfR
|
Putative sugar ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17)
|
||
|
ytfT
|
Putative sugar ABC transport system, permease protein YtfT
|
||
|
yjfF
|
Putative sugar ABC transport system, permease protein YjfF
|
||
|
Position: -230
Score: 5.1 Sequence: TTTTGTGAAGTAAATCACCTAT
Position: -186
Score: 4.5 Sequence: TTGTGTGATTTTTGTCACGTTG
Locus tag: ECA0087
Name: mtlA Funciton: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Locus tag: ECA0088
Name: mtlD Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
Locus tag: ECA0089
Name: mtlR Funciton: Mannitol operon repressor |
|||
|
mtlA
|
PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
|
||
|
mtlD
|
Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
|
||
|
mtlR
|
Mannitol operon repressor
|
||
|
Position: -120
Score: 3.7 Sequence: ATTGGTGATTTAGCTCAAGGTC
Position: -55
Score: 3.4 Sequence: TTTTGAAATTGGTATTACCAAT
Locus tag: ECA3790
Name: pdhR Funciton: Transcriptional repressor for pyruvate dehydrogenase complex
Locus tag: ECA3789
Name: aceE Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: ECA3788
Name: aceF Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) |
|||
|
pdhR
|
Transcriptional repressor for pyruvate dehydrogenase complex
|
||
|
aceE
|
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
|
||
|
aceF
|
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
|
||
|
Position: -261
Score: 3.8 Sequence: AAATCTGATAATCATCAAGCAT
Locus tag: ECA3530
Name: rpoS Funciton: RNA polymerase sigma factor RpoS |
|||
|
rpoS
|
RNA polymerase sigma factor RpoS
|
||
|
Position: -159
Score: 3.5 Sequence: TATTTTGAATAAAAATACAATA
Locus tag: ECA0192
Name: argC Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Locus tag: ECA0193
Name: argB Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: ECA0194
Name: argH Funciton: Argininosuccinate lyase (EC 4.3.2.1) |
|||
|
argC
|
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
|
||
|
argB
|
Acetylglutamate kinase (EC 2.7.2.8)
|
||
|
argH
|
Argininosuccinate lyase (EC 4.3.2.1)
|
||
|
Position: -315
Score: 4.5 Sequence: AAGTTCGATGTTGATCACAAAA
Locus tag: ECA2326
Name: adhE Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
|||
|
adhE
|
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
|
||
|
Position: -78
Score: 3.5 Sequence: AAGTATGACGGGTATAAAAATG
Locus tag: ECA2594
Name: serC Funciton: Phosphoserine aminotransferase (EC 2.6.1.52)
Locus tag: ECA2593
Name: aroA Funciton: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) |
|||
|
serC
|
Phosphoserine aminotransferase (EC 2.6.1.52)
|
||
|
aroA
|
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
|
||
|
Position: -169
Score: 4.3 Sequence: AAACGTGATCGGGATCGCATCG
Locus tag: ECA1683
Name: trg Funciton: Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein) |
|||
|
trg
|
Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein)
|
||
|
Position: -234
Score: 3.6 Sequence: TTTTGTTATATAACAAAAACTT
Locus tag: ECA0051
Name: gdhA Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
|||
|
gdhA
|
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
|
||
|
Position: -203
Score: 3.9 Sequence: AATAGTGACCTGTCGCAAAAAC
Locus tag: ECA1151
Name: hupB Funciton: HU, DNA-binding transcriptional regulator, beta subunit |
|||
|
hupB
|
HU, DNA-binding transcriptional regulator, beta subunit
|
||
|
Position: -64
Score: 3.8 Sequence: AATTTTGATGAAACTACCACAA
Locus tag: ECA3781
Name: fepA Funciton: iron-enterobactin outer membrane transporter |
|||
|
fepA
|
iron-enterobactin outer membrane transporter
|
||
|
Position: -163
Score: 4.3 Sequence: TTATGTGAACGAATTAACAATC
Locus tag: ECA3778
Name: acnB Funciton: Aconitate hydratase 2 (EC 4.2.1.3) |
|||
|
acnB
|
Aconitate hydratase 2 (EC 4.2.1.3)
|
||
|
Position: -118
Score: 4 Sequence: AGGTGTTAAATTGATCACGTTT
Locus tag: ECA4187
Name: cyaA Funciton: Adenylate cyclase (EC 4.6.1.1) |
|||
|
cyaA
|
Adenylate cyclase (EC 4.6.1.1)
|
||
|
Position: -145
Score: 3.5 Sequence: TATCGCGATACAGTTCATCACT
Locus tag: ECA2429
Name: ugpB Funciton: Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3) |
|||
|
ugpB
|
Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)
|
||
|
Position: -297
Score: 4.6 Sequence: TAGTTTGATCTCTATCTCAAAA
Position: -227
Score: 3.4 Sequence: TATCATGATACCGGTAACAAGT
Position: -203
Score: 4.1 Sequence: GGGTGTGACAAAAATCACAAAT
Locus tag: ECA1840
Name: gntT Funciton: gluconate transporter |
|||
|
gntT
|
gluconate transporter
|
||
|
Position: -186
Score: 4.2 Sequence: AAGCGTGCTATAGATCTCACTT
Locus tag: ECA4079
Name: nirB Funciton: nitrite reductase (NAD(P)H) subunit
Locus tag: ECA4080
Name: nirD Funciton: nitrite reductase small subunit |
|||
|
nirB
|
nitrite reductase (NAD(P)H) subunit
|
||
|
nirD
|
nitrite reductase small subunit
|
||
|
Position: -296
Score: 3.5 Sequence: TATTGCGAGCGAGATCTTTTAT
Position: -247
Score: 3.5 Sequence: TTAATAGATTTAGATCAAGAAA
Locus tag: ECA1533
Name: dcuB Funciton: C4-dicarboxylate transporter DcuB |
|||
|
dcuB
|
C4-dicarboxylate transporter DcuB
|
||
|
Position: -185
Score: 3.3 Sequence: TTTTTTAATTTTAATCTTCATT
Locus tag: ECA3991
Name: aceB Funciton: malate synthase A
Locus tag: ECA3990
Name: aceA Funciton: isocitrate lyase |
|||
|
aceB
|
malate synthase A
|
||
|
aceA
|
isocitrate lyase
|
||
|
Position: -197
Score: 3.3 Sequence: AAACGTGATTTAAGGCCTGAAA
Locus tag: ECA0238
Name: hupA Funciton: DNA-binding protein HU-alpha (HU-2) |
|||
|
hupA
|
DNA-binding protein HU-alpha (HU-2)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |