Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Crp in Erwinia carotovora subsp. atroseptica SCRI1043

Properties
Regulator type: Transcription factor
TF locus tag: ECA4064
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Regulog: Crp - Enterobacteriales
Statistics of regulated genes:
- Genes 175
- Operons 105
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 2301 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -332
Score: 3.8
Sequence: AATTTTTATCTTCCTTATATTT
Position: -262
Score: 4.9
Sequence: TTTAGTGATATCAGTCACATTA
Locus tag: ECA3081
Name: fadL
Funciton: Long-chain fatty acid transport protein
ECA3081
fadL
Long-chain fatty acid transport protein
Position: -175
Score: 4.8
Sequence: CATTGTGAGCCAGATCAAATTT
Locus tag: ECA3209
Name: guaB
Funciton: inosine-5'-monophosphate dehydrogenase
Locus tag: ECA3208
Name: guaA
Funciton: bifunctional GMP synthase/glutamine amidotransferase protein
ECA3209
guaB
inosine-5'-monophosphate dehydrogenase
ECA3208
guaA
bifunctional GMP synthase/glutamine amidotransferase protein
Position: -37
Score: 5.1
Sequence: TAGTGTGATCTAAATCACTTTT
Locus tag: ECA0276
Name: aaeR
Funciton: LysR-family transcriptional regulator
ECA0276
aaeR
LysR-family transcriptional regulator
Position: -95
Score: 4.2
Sequence: AGGTATGATGTTAATCATAAAT
Locus tag: ECA3039
Name: ackA
Funciton: acetate kinase
Locus tag: ECA3040
Name: pta
Funciton: phosphate acetyltransferase
ECA3039
ackA
acetate kinase
ECA3040
pta
phosphate acetyltransferase
Position: -203
Score: 5
Sequence: TATTGTGACATACATCACTTAT
Position: -97
Score: 4.1
Sequence: TTGCGTGATCAATCGCGCAAAA
Locus tag: ECA0808
Name: acs
Funciton: acetyl-coenzyme A synthetase
Locus tag: ECA0807
Name: yjcH
Funciton: membrane protein
Locus tag: ECA0806
Name: actP
Funciton: acetate permease
ECA0808
acs
acetyl-coenzyme A synthetase
ECA0807
yjcH
membrane protein
ECA0806
actP
acetate permease
Position: -36
Score: 3.6
Sequence: AAGTATGACGGGTATATCACTT
Locus tag: ECA0118
Name: aldA
Funciton: aldehyde dehydrogenase A
ECA0118
aldA
aldehyde dehydrogenase A
Position: -133
Score: 3.9
Sequence: ACCTTTGACCAGCTTCACAAAA
Locus tag: ECA2274
Name: araB
Funciton: L-ribulokinase
Locus tag: ECA2275
Name: araA
Funciton: L-arabinose isomerase
ECA2274
araB
L-ribulokinase
ECA2275
araA
L-arabinose isomerase
Position: -65
Score: 4
Sequence: TATTGTATTTTTATTCAAAATA
Locus tag: ECA0191
Name: argE
Funciton: acetylornithine deacetylase
ECA0191
argE
acetylornithine deacetylase
Position: -172
Score: 4.4
Sequence: TTATGTGACTCAGGACGCATTT
Locus tag: ECA0684
Name: argR
Funciton: arginine repressor
ECA0684
argR
arginine repressor
Position: -255
Score: 3.9
Sequence: CATGGCGATCGTGGTCACATAA
Position: -212
Score: 3.9
Sequence: TATTGAAATCGCACTCATATAT
Locus tag: ECA2165
Name: ascF
Funciton: hypothetical protein
Locus tag: ECA2166
Name: ascB
Funciton: 6-phospho-beta-glucosidase
ECA2165
ascF
hypothetical protein
ECA2166
ascB
6-phospho-beta-glucosidase
Position: -272
Score: 4
Sequence: ACTCGTGACTACAATCACAGTT
Locus tag: ECA0621
Name: aspA
Funciton: aspartate ammonia-lyase
Locus tag: ECA0620
Name: dcuA
Funciton: anaerobic C-4-dicarboxylate symporter
ECA0621
aspA
aspartate ammonia-lyase
ECA0620
dcuA
anaerobic C-4-dicarboxylate symporter
Position: -254
Score: 5
Sequence: TTATGTGAGTCACATCACAGAT
Locus tag: ECA4519
Name: atpI
Funciton: ATP synthase subunit I
Locus tag: ECA4518
Name: atpB
Funciton: ATP synthase subunit A
Locus tag: ECA4517
Name: atpE
Funciton: ATP synthase subunit C
Locus tag: ECA4516
Name: atpF
Funciton: ATP synthase subunit B
Locus tag: ECA4515
Name: atpH
Funciton: ATP synthase subunit D
Locus tag: ECA4514
Name: atpA
Funciton: ATP synthase subunit A
Locus tag: ECA4513
Name: atpG
Funciton: ATP synthase subunit C
Locus tag: ECA4512
Name: atpD
Funciton: ATP synthase subunit B
Locus tag: ECA4511
Name: atpC
Funciton: ATP synthase epsilon subunit
ECA4519
atpI
ATP synthase subunit I
ECA4518
atpB
ATP synthase subunit A
ECA4517
atpE
ATP synthase subunit C
ECA4516
atpF
ATP synthase subunit B
ECA4515
atpH
ATP synthase subunit D
ECA4514
atpA
ATP synthase subunit A
ECA4513
atpG
ATP synthase subunit C
ECA4512
atpD
ATP synthase subunit B
ECA4511
atpC
ATP synthase epsilon subunit
Position: -267
Score: 3.8
Sequence: TAGTGTTGTTTGCATCATAAAT
Locus tag: ECA2389
Name: b1821
Funciton: hypothetical protein
ECA2389
b1821
hypothetical protein
Position: -130
Score: 4.6
Sequence: AATTGAGATACATCTCGCATTT
Position: -79
Score: 4.5
Sequence: TAAAGAGATTCCGATCACAATT
Locus tag: ECA2830
Name: cdd
Funciton: cytidine deaminase
ECA2830
cdd
cytidine deaminase
Position: -104
Score: 3.9
Sequence: AAACGTGTTATTGCTCACAAGT
Locus tag: ECA2577
Name: citA
Funciton: signal transduction histidine kinase regulating citrate/malate metabolism
Locus tag: ECA2578
Name: citB
Funciton: response regulator receiver and unknown domain protein
ECA2577
citA
signal transduction histidine kinase regulating citrate/malate metabolism
ECA2578
citB
response regulator receiver and unknown domain protein
Position: -53
Score: 3.9
Sequence: AAACGTGTTAAGTATCAAATAG
Locus tag: ECA3804
Name: yacG
Funciton: zinc-binding protein
ECA3804
yacG
zinc-binding protein
Position: -113
Score: 3.9
Sequence: TTTAGCGACTTTTATCACTTTT
Locus tag: ECA1294
Name: cspE
Funciton: cold shock protein E
ECA1294
cspE
cold shock protein E
Position: -258
Score: 3.7
Sequence: TAAAGTGATTATCGTCTCTAAA
Locus tag: ECA3601
Name: cysQ
Funciton: PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
ECA3601
cysQ
PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
Position: -157
Score: 3.8
Sequence: TGACGTGATTCAGCTCTTGTTT
Locus tag: ECA4362
Name: dctA
Funciton: C4-dicarboxylate transport protein
ECA4362
dctA
C4-dicarboxylate transport protein
Position: -96
Score: 4.4
Sequence: CAATTTGAGCCGGTTCACACTT
Locus tag: ECA0718
Name: deaD
Funciton: ATP-independent RNA helicase
ECA0718
deaD
ATP-independent RNA helicase
Position: -282
Score: 4.4
Sequence: AAGTGTGAATGAATGCACAAAA
Locus tag: ECA0727
Name: deoC
Funciton: 2-deoxyribose-5-phosphate aldolase
Locus tag: ECA0728
Name: deoA
Funciton: thymidine phosphorylase
Locus tag: ECA0729
Name: deoB
Funciton: phosphopentomutase
Locus tag: ECA0730
Name: deoD
Funciton: purine nucleoside phosphorylase
ECA0727
deoC
2-deoxyribose-5-phosphate aldolase
ECA0728
deoA
thymidine phosphorylase
ECA0729
deoB
phosphopentomutase
ECA0730
deoD
purine nucleoside phosphorylase
Position: -164
Score: 4.2
Sequence: TTTTGTGATCCAGATTGTAGTA
Locus tag: ECA4419
Name: dgoR
Funciton: GntR domain protein
Locus tag: ECA4418
Name: dgoK
Funciton: 2-dehydro-3-deoxygalactonokinase
Locus tag: ECA4417
Name: dgoA2
Funciton: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase
Locus tag: ECA4416
Name: dgoA1
Funciton: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein
Locus tag: ECA4415
Name: dgoT
Funciton: D-galactonate transport
ECA4419
dgoR
GntR domain protein
ECA4418
dgoK
2-dehydro-3-deoxygalactonokinase
ECA4417
dgoA2
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
ECA4416
dgoA1
Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein
ECA4415
dgoT
D-galactonate transport
Position: -194
Score: 4.1
Sequence: TTTTATGACGCAGGTCACTCTT
Locus tag: ECA3913
Name: epd
Funciton: D-erythrose 4-phosphate dehydrogenase
Locus tag: ECA3912
Name: pgk
Funciton: phosphoglycerate kinase
ECA3913
epd
D-erythrose 4-phosphate dehydrogenase
ECA3912
pgk
phosphoglycerate kinase
Position: -58
Score: 4.3
Sequence: TAGATTGATCTAAATCACAATC
Locus tag: ECA2434
Name: CKO_01286
Funciton: hypothetical protein
ECA2434
CKO_01286
hypothetical protein
Position: -208
Score: 4.8
Sequence: TTTTGTGATATCACTCAACTTT
Locus tag: ECA0644
Name: exuT
Funciton: Hexuronate transporter
ECA0644
exuT
Hexuronate transporter
Position: -132
Score: 3.8
Sequence: ATTAGTGATCGTTCTCGCAACC
Position: -75
Score: 3.7
Sequence: TAAAATAATGTTAATAACAATA
Locus tag: ECA2372
Name: fadD
Funciton: long-chain-fatty-acid--CoA ligase
Locus tag: ECA2371
Name: rnd
Funciton: ribonuclease D
ECA2372
fadD
long-chain-fatty-acid--CoA ligase
ECA2371
rnd
ribonuclease D
Position: -79
Score: 4.5
Sequence: CAATATGATCCACATCAAATTT
Locus tag: ECA2596
Name: focA
Funciton: formate transporter
Locus tag: ECA2597
Name: pflB
Funciton: formate acetyltransferase
ECA2596
focA
formate transporter
ECA2597
pflB
formate acetyltransferase
Position: -180
Score: 4.1
Sequence: AAATGTGCGTGATGTCAAAATT
Locus tag: ECA2729
Name: fruB
Funciton: PTS system, fructose-specific IIA/FPr component
Locus tag: ECA2728
Name: fruK
Funciton: 1-phosphofructokinase
Locus tag: ECA2727
Name: fruA
Funciton: PTS system, fructose-specific IIBC component
ECA2729
fruB
PTS system, fructose-specific IIA/FPr component
ECA2728
fruK
1-phosphofructokinase
ECA2727
fruA
PTS system, fructose-specific IIBC component
Position: -245
Score: 3.7
Sequence: AACTGTGATTGTAGTCACGAGT
Position: -185
Score: 3.6
Sequence: AAATGTGCAAAGGCGCACCCAT
Locus tag: ECA0623
Name: fxsA
Funciton: suppressor of F plamsid exlusion of phage T7
ECA0623
fxsA
suppressor of F plamsid exlusion of phage T7
Position: -72
Score: 3.7
Sequence: ATTCTCGCTGTAGATCACCTTT
Locus tag: ECA1389
Name: galE2
Funciton: UDP-galactose-4-epimerase
Locus tag: ECA1388
Name: galM
Funciton: aldose 1-epimerase
ECA1389
galE2
UDP-galactose-4-epimerase
ECA1388
galM
aldose 1-epimerase
Position: -154
Score: 4
Sequence: TATAGTGAAACTGATTACATTG
Locus tag: ECA3171
Name: galT
Funciton: galactose-1-phosphate uridylyltransferase
Locus tag: ECA3170
Name: galK
Funciton: galactokinase
ECA3171
galT
galactose-1-phosphate uridylyltransferase
ECA3170
galK
galactokinase
Position: -235
Score: 5.8
Sequence: AATTGTGATGTGTATCACATAA
Locus tag: ECA2344
Name: gapA
Funciton: glyceraldehyde-3-phosphate dehydrogenase
Locus tag: ECA2345
Name: yeaD
Funciton: Aldose 1-epimerase
ECA2344
gapA
glyceraldehyde-3-phosphate dehydrogenase
ECA2345
yeaD
Aldose 1-epimerase
Position: -296
Score: 4.2
Sequence: TAGTGCGAGGTATTTCACGAAA
Position: -204
Score: 5.1
Sequence: AAATGTGATCAAACTCACCAAA
Locus tag: ECA3578
Name: garD
Funciton: D-galactarate dehydratase
ECA3578
garD
D-galactarate dehydratase
Position: -21
Score: 4.8
Sequence: AAAAGTGAACGGGATCACAAAA
Locus tag: ECA1966
Name: CKO_02295
Funciton: hypothetical protein
ECA1966
CKO_02295
hypothetical protein
Position: -265
Score: 4.2
Sequence: CTTTGTGATCCCTTTCACGGTG
Locus tag: ECA0029
Name: glnA
Funciton: glutamine synthetase
Locus tag: ECA0028
Name: glnL
Funciton: nitrogen regulation protein NR(II)
Locus tag: ECA0027
Name: glnG
Funciton: nitrogen regulation protein NR(I)
ECA0029
glnA
glutamine synthetase
ECA0028
glnL
nitrogen regulation protein NR(II)
ECA0027
glnG
nitrogen regulation protein NR(I)
Position: -148
Score: 5.1
Sequence: TTTAGTGATGCAAATCACACTT
Locus tag: ECA4165
Name: glpA
Funciton: sn-glycerol-3-phosphate dehydrogenase subunit A
Locus tag: ECA4164
Name: glpB
Funciton: Glycerol-3-phosphate dehydrogenase subunit B
Locus tag: ECA4163
Name: glpC
Funciton: anaerobic glycerol-3-phosphate dehydrogenase subunit C
ECA4165
glpA
sn-glycerol-3-phosphate dehydrogenase subunit A
ECA4164
glpB
Glycerol-3-phosphate dehydrogenase subunit B
ECA4163
glpC
anaerobic glycerol-3-phosphate dehydrogenase subunit C
Position: -144
Score: 4.3
Sequence: TAATGTGACAACTATCATCATA
Position: -124
Score: 4.4
Sequence: TATTGTTAGCTTCATCACGCAT
Locus tag: ECA4141
Name: glpD
Funciton: glycerol-3-phosphate dehydrogenase
ECA4141
glpD
glycerol-3-phosphate dehydrogenase
Position: -153
Score: 4.3
Sequence: TTTTTTGACGCGCAACACACAT
Locus tag: ECA4266
Name: glpF
Funciton: facilitator for glycerol uptake
Locus tag: ECA4267
Name: glpK
Funciton: glycerol kinase
Locus tag: ECA4268
Name: glpX
Funciton: fructose 1,6-bisphosphatase II
ECA4266
glpF
facilitator for glycerol uptake
ECA4267
glpK
glycerol kinase
ECA4268
glpX
fructose 1,6-bisphosphatase II
Position: -253
Score: 3.7
Sequence: ATGTTTGATAAAGAGCAAAAAC
Position: -193
Score: 4.9
Sequence: AAGTGTGATTTGCATCACTAAA
Locus tag: ECA4166
Name: glpT
Funciton: glycerol-3-phosphate transporter
Locus tag: ECA4167
Name: glpQ
Funciton: glycerophosphoryl diester phosphodiesterase
ECA4166
glpT
glycerol-3-phosphate transporter
ECA4167
glpQ
glycerophosphoryl diester phosphodiesterase
Position: -21
Score: 4.8
Sequence: AAAAGTGAACGGGATCACAAAA
Locus tag: ECA1966
Name: CKO_02295
Funciton: hypothetical protein
ECA1966
CKO_02295
hypothetical protein
Position: -149
Score: 4.1
Sequence: CTTTGTGATCGCTTCCACTTTA
Position: -92
Score: 4.5
Sequence: ATATGTTATGGAAAACACAAAT
Locus tag: ECA1490
Name: lacZ
Funciton: beta-D-galactosidase
Locus tag: ECA1489
Name: lacY
Funciton: lactose permease
ECA1490
lacZ
beta-D-galactosidase
ECA1489
lacY
lactose permease
Position: -56
Score: 3.6
Sequence: TTGTGTAATACTTGTAACGCTA
Locus tag: ECA1866
Name: lpp
Funciton: major outer membrane lipoprotein
ECA1866
lpp
major outer membrane lipoprotein
Position: -180
Score: 5
Sequence: TTATGTGATAAAAATCACCAAA
Locus tag: ECA1326
Name: nagB
Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Locus tag: ECA1325
Name: nagA
Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: ECA1324
Name: nagC
Funciton: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
ECA1326
nagB
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
ECA1325
nagA
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
ECA1324
nagC
N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
Position: -202
Score: 5
Sequence: TTTGGTGATTTTTATCACATAA
Locus tag: ECA1327
Name: nagE
Funciton: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
ECA1327
nagE
PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Position: -153
Score: 4
Sequence: TAAATTGATATATATCAATTTT
Locus tag: ECA1815
Name: ndh
Funciton: NADH dehydrogenase (EC 1.6.99.3)
ECA1815
ndh
NADH dehydrogenase (EC 1.6.99.3)
Position: -84
Score: 3.7
Sequence: TTTTGCGTCCTTCCTCTCATTT
Position: -31
Score: 3.9
Sequence: AAATTTGGCCTGCCTCATATTT
Locus tag: ECA3183
Name: nupC
Funciton: Nucleoside permease NupC
ECA3183
nupC
Nucleoside permease NupC
Position: -182
Score: 4.9
Sequence: AATTGTGACGAAGATCACTTTT
Locus tag: ECA0473
Name: nupC2
Funciton: Na+ dependent nucleoside transporter
ECA0473
nupC2
Na+ dependent nucleoside transporter
Position: -200
Score: 3.9
Sequence: TCTTATGACACAAATCACATCA
Locus tag: ECA1751
Name: ompA
Funciton: outer membrane protein A
ECA1751
ompA
outer membrane protein A
Position: -177
Score: 4.3
Sequence: TGTTTTGATTTGTTTCGCCTTT
Locus tag: ECA0469
Name: osmY
Funciton: Osmotically inducible protein OsmY
ECA0469
osmY
Osmotically inducible protein OsmY
Position: -81
Score: 4
Sequence: TTTTATGATTGCTATCGCGGTT
Locus tag: ECA4106
Name: pck
Funciton: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
ECA4106
pck
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Position: -162
Score: 4.6
Sequence: AAACGTGATAGCAATCAAACAT
Locus tag: ECA1805
Name: ptsG
Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
ECA1805
ptsG
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Position: -130
Score: 3.7
Sequence: TTGTGCAACCTTGTTAACAAAT
Locus tag: ECA4218
Name: putP
Funciton: Proline/sodium symporter PutP (TC 2.A.21.2.1)
ECA4218
putP
Proline/sodium symporter PutP (TC 2.A.21.2.1)
Position: -144
Score: 3.9
Sequence: CGGTGTGATCCTTGCCACACTT
Locus tag: ECA0441
Name: rhaS
Funciton: L-rhamnose operon regulatory protein RhaS
Locus tag: ECA0442
Name: rhaR
Funciton: L-rhamnose operon transcriptional activator RhaR
ECA0441
rhaS
L-rhamnose operon regulatory protein RhaS
ECA0442
rhaR
L-rhamnose operon transcriptional activator RhaR
Position: -193
Score: 3.6
Sequence: TTTTGTGATCCTGCCTATATCA
Locus tag: ECA0450
Name: rhaT
Funciton: L-rhamnose-proton symport
ECA0450
rhaT
L-rhamnose-proton symport
Position: -195
Score: 3.7
Sequence: TTCTGTGATCGCCTCAATATTA
Locus tag: ECA3158
Name: sdaC
Funciton: Serine transporter
Locus tag: ECA3159
Name: sdaB
Funciton: L-serine dehydratase 1
ECA3158
sdaC
Serine transporter
ECA3159
sdaB
L-serine dehydratase 1
Position: -265
Score: 4.7
Sequence: ATTCGTGATCTAAATCACTGTT
Locus tag: ECA1357
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: ECA1358
Name: sdhD
Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: ECA1359
Name: sdhA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: ECA1360
Name: sdhB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
ECA1357
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
ECA1358
sdhD
Succinate dehydrogenase hydrophobic membrane anchor protein
ECA1359
sdhA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
ECA1360
sdhB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -214
Score: 3.9
Sequence: TTTGGTACTTAATATCACATTT
Locus tag: ECA3905
Name: serA
Funciton: D-3-phosphoglycerate dehydrogenase
ECA3905
serA
D-3-phosphoglycerate dehydrogenase
Position: -159
Score: 3.9
Sequence: TAATGTGCATTCTGGCACACTT
Locus tag: ECA2735
Name: spr
Funciton: predicted peptidase, outer membrane lipoprotein
ECA2735
spr
predicted peptidase, outer membrane lipoprotein
Position: -129
Score: 4.4
Sequence: ATTTGCTATATCCATCACACTT
Locus tag: ECA3792
Name: araT
Funciton: putative permease of the Na+:galactoside symporter family
Locus tag: ECA3793
Name: abfA
Funciton: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)
ECA3792
araT
putative permease of the Na+:galactoside symporter family
ECA3793
abfA
Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)
Position: -246
Score: 4.5
Sequence: TAATGTGATTAACATCCAAAAA
Position: -196
Score: 4
Sequence: AACTGTGACCGGCTTAGCACAA
Locus tag: ECA3772
Name: CKO_00488
Funciton: LacI-family transcriptional regulator
ECA3772
CKO_00488
LacI-family transcriptional regulator
Position: -154
Score: 3.7
Sequence: TAGTATGATTCAATAAACACAA
Locus tag: ECA1162
Name: tesB
Funciton: Acyl-CoA thioesterase II (EC 3.1.2.-)
ECA1162
tesB
Acyl-CoA thioesterase II (EC 3.1.2.-)
Position: -172
Score: 5.5
Sequence: TTATGTGATTAAAATCACATAA
Locus tag: ECA3796
Name: tsx
Funciton: Nucleoside-specific channel-forming protein Tsx precursor
ECA3796
tsx
Nucleoside-specific channel-forming protein Tsx precursor
Position: -197
Score: 5.1
Sequence: AAAAGTGATTTAAGTCACATTT
Locus tag: ECA0185
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
ECA0185
udp
Uridine phosphorylase (EC 2.4.2.3)
Position: -229
Score: 4.1
Sequence: AAAGTTGAGTGATATCACAAAA
Position: -109
Score: 3.8
Sequence: TTTTGCGATCATGACCTCACAA
Position: -86
Score: 3.7
Sequence: TCCTGTGAGATATTGCGCATAA
Locus tag: ECA0645
Name: uxaC
Funciton: Uronate isomerase (EC 5.3.1.12)
ECA0645
uxaC
Uronate isomerase (EC 5.3.1.12)
Position: -223
Score: 4.7
Sequence: TTTTTTGATGCGGGTCATATTT
Position: -135
Score: 4.4
Sequence: TTTTGCGACACAGCGCACATTT
Locus tag: ECA0097
Name: xylA
Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: ECA0096
Name: xylB
Funciton: Xylulose kinase (EC 2.7.1.17)
ECA0097
xylA
Xylose isomerase (EC 5.3.1.5)
ECA0096
xylB
Xylulose kinase (EC 2.7.1.17)
Position: -272
Score: 4.5
Sequence: AAATATGACCCGCATCAAAAAA
Locus tag: ECA0098
Name: xylF
Funciton: Xylose ABC transporter, periplasmic xylose-binding protein XylF
Locus tag: ECA0099
Name: xylG
Funciton: D-xylose transport ATP-binding protein XylG
Locus tag: ECA0100
Name: xylH
Funciton: Xylose ABC transporter, permease protein XylH
Locus tag: ECA0101
Name: xylR
Funciton: Xylose activator XylR (AraC family)
ECA0098
xylF
Xylose ABC transporter, periplasmic xylose-binding protein XylF
ECA0099
xylG
D-xylose transport ATP-binding protein XylG
ECA0100
xylH
Xylose ABC transporter, permease protein XylH
ECA0101
xylR
Xylose activator XylR (AraC family)
Position: -120
Score: 4.4
Sequence: TTTTGTGAGTTCTTCCACAGAT
Position: -102
Score: 3.6
Sequence: AGATTTAACCTAATTCCCATTT
Locus tag: ECA3300
Name: cdaR
Funciton: carbohydrate diacid regulator
ECA3300
cdaR
carbohydrate diacid regulator
Position: -41
Score: 4
Sequence: TAATGCGCGCCAAATCACATTC
Locus tag: ECA3010
Name: ybiT
Funciton: ABC transporter ATP-binding protein
ECA3010
ybiT
ABC transporter ATP-binding protein
Position: -275
Score: 3.6
Sequence: TAGCGTGATTATGAGAACGCTA
Position: -117
Score: 3.8
Sequence: ATCTGTGATCCCTCCCGCAATC
Locus tag: ECA2185
Name: ychH
Funciton: membrane protein
ECA2185
ychH
membrane protein
Position: -176
Score: 3.7
Sequence: TGACGTTATCTGCTGCACCCAT
Locus tag: ECA2410
Name: tcyP
Funciton: L-cystine uptake protein TcyP
ECA2410
tcyP
L-cystine uptake protein TcyP
Position: -135
Score: 5.6
Sequence: TTATGTGATACACATCACAATT
Locus tag: ECA2343
Name: msrB
Funciton: methionine sulfoxide reductase B
Locus tag: ECA2342
Name: b1777
Funciton: conserved hypothetical protein
ECA2343
msrB
methionine sulfoxide reductase B
ECA2342
b1777
conserved hypothetical protein
Position: -178
Score: 4
Sequence: ATTCGTGATCAGTTTGGCATTA
Position: -101
Score: 3.8
Sequence: TGTTGTTTTTTTGTTCACGAAA
Locus tag: ECA2740
Name: yejG
Funciton: hypothetical protein
ECA2740
yejG
hypothetical protein
Position: -138
Score: 3.7
Sequence: TTCTGCAACGCAGTTCACAGTA
Locus tag: ECA1292
Name: yffB
Funciton: FIG138056: a glutathione-dependent thiol reductase
Locus tag: ECA1291
Name: dapE
Funciton: N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)
ECA1292
yffB
FIG138056: a glutathione-dependent thiol reductase
ECA1291
dapE
N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18)
Position: -86
Score: 4
Sequence: AAAAGCGATCAATCTCACGCTT
Locus tag: ECA3349
Name: raiA
Funciton: stationary phase translation inhibitor and ribosome stability factor
ECA3349
raiA
stationary phase translation inhibitor and ribosome stability factor
Position: -199
Score: 4
Sequence: AAAATTGATTTAAGTCAAAGAT
Locus tag: ECA3288
Name: grcA
Funciton: Autonomous glycyl radical cofactor
ECA3288
grcA
Autonomous glycyl radical cofactor
Position: -267
Score: 4.8
Sequence: TGTGGTGATTTTTATCACATAA
Locus tag: ECA4325
Name: ygbI
Funciton: Hypothetical transcriptional regulator ygbI
ECA4325
ygbI
Hypothetical transcriptional regulator ygbI
Position: -92
Score: 4.5
Sequence: TTATGTGATAAAAATCACCACA
Locus tag: ECA4327
Name: ygbJ
Funciton: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
Locus tag: ECA4328
Name: ygbK
Funciton: hypothetical protein
ECA4327
ygbJ
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
ECA4328
ygbK
hypothetical protein
Position: -72
Score: 3.7
Sequence: ATGTGTGATGTAGATTAGTGTT
Locus tag: ECA0316
Name: elbB
Funciton: sigma cross-reacting protein 27A (SCRP-27A)
Locus tag: ECA0317
Name: mtgA
Funciton: monofunctional biosynthetic peptidoglycan transglycosylase
ECA0316
elbB
sigma cross-reacting protein 27A (SCRP-27A)
ECA0317
mtgA
monofunctional biosynthetic peptidoglycan transglycosylase
Position: -222
Score: 4.7
Sequence: AATTGTGTGCGATCTCACATAT
Locus tag: ECA0769
Name: yhjE
Funciton: Inner membrane metabolite transport protein YhjE
ECA0769
yhjE
Inner membrane metabolite transport protein YhjE
Position: -228
Score: 3.8
Sequence: TTACGTTATACCCGTCATACTT
Locus tag: ECA4428
Name: yidA
Funciton: Phosphatase YidA
ECA4428
yidA
Phosphatase YidA
Position: -144
Score: 3.9
Sequence: AATTGCGACCCATTACGCACAA
Locus tag: ECA4230
Name: yifB
Funciton: magnesium chelatase family protein
ECA4230
yifB
magnesium chelatase family protein
Position: -57
Score: 3.7
Sequence: TATTTTTCTACAGCTAACAAAA
Locus tag: ECA1187
Name: cstA2
Funciton: Carbon starvation protein A paralog
Locus tag: ECA1188
Name: yjiX
Funciton: hypothetical protein
Locus tag: ECA1189
Name: yjiA
Funciton: ATP-binding protein
ECA1187
cstA2
Carbon starvation protein A paralog
ECA1188
yjiX
hypothetical protein
ECA1189
yjiA
ATP-binding protein
Position: -83
Score: 3.7
Sequence: AATCGTGATCGATTACACGTCC
Locus tag: ECA3892
Name: yjtD
Funciton: RNA methyltransferase, TrmH family, group 1
ECA3892
yjtD
RNA methyltransferase, TrmH family, group 1
Position: -226
Score: 4.4
Sequence: ATATGCGCGCTAAATCACATAA
Locus tag: ECA2258
Name: mlc
Funciton: ROK family transcriptional regulatory protein
ECA2258
mlc
ROK family transcriptional regulatory protein
Position: -69
Score: 4.5
Sequence: ATTCGTGATCTGTGGCACGTAA
Locus tag: ECA2828
Name: yohJ
Funciton: LrgA family protein
Locus tag: ECA2829
Name: yohK
Funciton: LrgB family protein
ECA2828
yohJ
LrgA family protein
ECA2829
yohK
LrgB family protein
Position: -105
Score: 3.6
Sequence: TTACTCGATCCGTGTCACTTTT
Locus tag: ECA3993
Name: yrdA
Funciton: carbonic anhydrase, family 3
ECA3993
yrdA
carbonic anhydrase, family 3
Position: -68
Score: 3.7
Sequence: TATTGTTAGCCTACTTACCATA
Locus tag: ECA4236
Name: ytfQ
Funciton: Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor
Locus tag: ECA4235
Name: ytfR
Funciton: Putative sugar ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17)
Locus tag: ECA4234
Name: ytfT
Funciton: Putative sugar ABC transport system, permease protein YtfT
Locus tag: ECA4233
Name: yjfF
Funciton: Putative sugar ABC transport system, permease protein YjfF
ECA4236
ytfQ
Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor
ECA4235
ytfR
Putative sugar ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17)
ECA4234
ytfT
Putative sugar ABC transport system, permease protein YtfT
ECA4233
yjfF
Putative sugar ABC transport system, permease protein YjfF
Position: -230
Score: 5.1
Sequence: TTTTGTGAAGTAAATCACCTAT
Position: -186
Score: 4.5
Sequence: TTGTGTGATTTTTGTCACGTTG
Locus tag: ECA0087
Name: mtlA
Funciton: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Locus tag: ECA0088
Name: mtlD
Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
Locus tag: ECA0089
Name: mtlR
Funciton: Mannitol operon repressor
ECA0087
mtlA
PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
ECA0088
mtlD
Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
ECA0089
mtlR
Mannitol operon repressor
Position: -120
Score: 3.7
Sequence: ATTGGTGATTTAGCTCAAGGTC
Position: -55
Score: 3.4
Sequence: TTTTGAAATTGGTATTACCAAT
Locus tag: ECA3790
Name: pdhR
Funciton: Transcriptional repressor for pyruvate dehydrogenase complex
Locus tag: ECA3789
Name: aceE
Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: ECA3788
Name: aceF
Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
ECA3790
pdhR
Transcriptional repressor for pyruvate dehydrogenase complex
ECA3789
aceE
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
ECA3788
aceF
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Position: -261
Score: 3.8
Sequence: AAATCTGATAATCATCAAGCAT
Locus tag: ECA3530
Name: rpoS
Funciton: RNA polymerase sigma factor RpoS
ECA3530
rpoS
RNA polymerase sigma factor RpoS
Position: -159
Score: 3.5
Sequence: TATTTTGAATAAAAATACAATA
Locus tag: ECA0192
Name: argC
Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Locus tag: ECA0193
Name: argB
Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: ECA0194
Name: argH
Funciton: Argininosuccinate lyase (EC 4.3.2.1)
ECA0192
argC
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
ECA0193
argB
Acetylglutamate kinase (EC 2.7.2.8)
ECA0194
argH
Argininosuccinate lyase (EC 4.3.2.1)
Position: -315
Score: 4.5
Sequence: AAGTTCGATGTTGATCACAAAA
Locus tag: ECA2326
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
ECA2326
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -78
Score: 3.5
Sequence: AAGTATGACGGGTATAAAAATG
Locus tag: ECA2594
Name: serC
Funciton: Phosphoserine aminotransferase (EC 2.6.1.52)
Locus tag: ECA2593
Name: aroA
Funciton: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
ECA2594
serC
Phosphoserine aminotransferase (EC 2.6.1.52)
ECA2593
aroA
5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Position: -169
Score: 4.3
Sequence: AAACGTGATCGGGATCGCATCG
Locus tag: ECA1683
Name: trg
Funciton: Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein)
ECA1683
trg
Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein)
Position: -234
Score: 3.6
Sequence: TTTTGTTATATAACAAAAACTT
Locus tag: ECA0051
Name: gdhA
Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
ECA0051
gdhA
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Position: -203
Score: 3.9
Sequence: AATAGTGACCTGTCGCAAAAAC
Locus tag: ECA1151
Name: hupB
Funciton: HU, DNA-binding transcriptional regulator, beta subunit
ECA1151
hupB
HU, DNA-binding transcriptional regulator, beta subunit
Position: -64
Score: 3.8
Sequence: AATTTTGATGAAACTACCACAA
Locus tag: ECA3781
Name: fepA
Funciton: iron-enterobactin outer membrane transporter
ECA3781
fepA
iron-enterobactin outer membrane transporter
Position: -163
Score: 4.3
Sequence: TTATGTGAACGAATTAACAATC
Locus tag: ECA3778
Name: acnB
Funciton: Aconitate hydratase 2 (EC 4.2.1.3)
ECA3778
acnB
Aconitate hydratase 2 (EC 4.2.1.3)
Position: -118
Score: 4
Sequence: AGGTGTTAAATTGATCACGTTT
Locus tag: ECA4187
Name: cyaA
Funciton: Adenylate cyclase (EC 4.6.1.1)
ECA4187
cyaA
Adenylate cyclase (EC 4.6.1.1)
Position: -145
Score: 3.5
Sequence: TATCGCGATACAGTTCATCACT
Locus tag: ECA2429
Name: ugpB
Funciton: Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)
ECA2429
ugpB
Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)
Position: -297
Score: 4.6
Sequence: TAGTTTGATCTCTATCTCAAAA
Position: -227
Score: 3.4
Sequence: TATCATGATACCGGTAACAAGT
Position: -203
Score: 4.1
Sequence: GGGTGTGACAAAAATCACAAAT
Locus tag: ECA1840
Name: gntT
Funciton: gluconate transporter
ECA1840
gntT
gluconate transporter
Position: -186
Score: 4.2
Sequence: AAGCGTGCTATAGATCTCACTT
Locus tag: ECA4079
Name: nirB
Funciton: nitrite reductase (NAD(P)H) subunit
Locus tag: ECA4080
Name: nirD
Funciton: nitrite reductase small subunit
ECA4079
nirB
nitrite reductase (NAD(P)H) subunit
ECA4080
nirD
nitrite reductase small subunit
Position: -296
Score: 3.5
Sequence: TATTGCGAGCGAGATCTTTTAT
Position: -247
Score: 3.5
Sequence: TTAATAGATTTAGATCAAGAAA
Locus tag: ECA1533
Name: dcuB
Funciton: C4-dicarboxylate transporter DcuB
ECA1533
dcuB
C4-dicarboxylate transporter DcuB
Position: -185
Score: 3.3
Sequence: TTTTTTAATTTTAATCTTCATT
Locus tag: ECA3991
Name: aceB
Funciton: malate synthase A
Locus tag: ECA3990
Name: aceA
Funciton: isocitrate lyase
ECA3991
aceB
malate synthase A
ECA3990
aceA
isocitrate lyase
Position: -197
Score: 3.3
Sequence: AAACGTGATTTAAGGCCTGAAA
Locus tag: ECA0238
Name: hupA
Funciton: DNA-binding protein HU-alpha (HU-2)
ECA0238
hupA
DNA-binding protein HU-alpha (HU-2)
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