Regulon of NarP in Erwinia carotovora subsp. atroseptica SCRI1043
| Regulator type: | Transcription factor |
| TF locus tag: | ECA1901 |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrate and nitrite respiration |
| Effector: | Nitrate; Nitrite |
| Regulog: | NarP - Enterobacteriales |
| Statistics of regulated genes: | |
| - Genes | 45 |
| - Operons | 13 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - NarP
- By TF family - LuxR
- By effector - Nitrate
- By effector - Nitrite
- By pathway - Nitrate and nitrite respiration
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -257
Score: 4.3 Sequence: TCACCCTTTAGAGGTA
Locus tag: ECA1900
Name: narQ Funciton: Nitrate/nitrite sensor kinase NarQ (EC 2.7.3.-)
Locus tag: ECA1901
Name: narP Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family |
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narQ
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Nitrate/nitrite sensor kinase NarQ (EC 2.7.3.-)
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narP
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Nitrate/nitrite response regulator protein NarP, LuxR family
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Position: -86
Score: 4.6 Sequence: TAACCCTTTAGGGTTA
Locus tag: ECA1882
Name: ccmA Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: ECA1883
Name: ccmB Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: ECA1884
Name: ccmC Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: ECA1885
Name: ccmD Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: ECA1886
Name: ccmE Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: ECA1887
Name: ccmF Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: ECA1888
Name: ccmG Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: ECA1889
Name: ccmH Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: ECA1890
Name: ccmH Funciton: Cytochrome c heme lyase, subunit CcmH |
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ccmA
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ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
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ccmB
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ABC transporter involved in cytochrome c biogenesis, CcmB subunit
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ccmC
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Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
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ccmD
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Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
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ccmE
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Cytochrome c-type biogenesis protein CcmE, heme chaperone
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ccmF
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Cytochrome c heme lyase, subunit CcmF
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ccmG
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Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
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ccmH
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Cytochrome c heme lyase, subunit CcmH
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ccmH
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Cytochrome c heme lyase, subunit CcmH
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Position: -111
Score: 4.4 Sequence: TACCTCTAAAGGGTGA
Locus tag: ECA1898
Name: napF Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: ECA1897
Name: napD Funciton: Periplasmic nitrate reductase component NapD
Locus tag: ECA1896
Name: napA Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: ECA1895
Name: napG Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: ECA1894
Name: napH Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: ECA1893
Name: napB Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: ECA1892
Name: napC Funciton: Cytochrome c-type protein NapC |
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napF
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Periplasmic nitrate reductase, ferredoxin-type protein NapF
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napD
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Periplasmic nitrate reductase component NapD
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napA
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Periplasmic nitrate reductase precursor (EC 1.7.99.4)
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napG
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Periplasmic nitrate reductase, ferredoxin-type protein NapG
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napH
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Periplasmic nitrate reductase, polyferredoxin NapH
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napB
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Nitrate reductase cytochrome c550-type subunit
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napC
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Cytochrome c-type protein NapC
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Position: -217
Score: 4.2 Sequence: CACTCCTTAATGAGTA
Position: -106
Score: 4.7 Sequence: TACTCACTAGTGGGTA
Locus tag: ECA2029
Name: narX Funciton: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Locus tag: ECA2028
Name: narL Funciton: Nitrate/nitrite response regulator protein NarL, LuxR family |
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narX
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Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
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narL
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Nitrate/nitrite response regulator protein NarL, LuxR family
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Position: -289
Score: 4 Sequence: CACCCACAAATAGGTA
Locus tag: ECA2326
Name: adhE Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
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adhE
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Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
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Position: -56
Score: 4.9 Sequence: TACCTACTTAGGGGTA
Locus tag: ECA2303
Name: ompW Funciton: Outer membrane protein W precursor |
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ompW
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Outer membrane protein W precursor
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Position: -122
Score: 4.3 Sequence: TACCCCTTTGTAGGTG
Locus tag: ECA1408
Name: fdnG Funciton: Formate dehydrogenase N, alpha subunit (EC 1.2.1.2)
Locus tag: ECA1407
Name: fdnH Funciton: Formate dehydrogenase N, beta subunit (EC 1.2.1.2)
Locus tag: ECA1406
Name: fdnI Funciton: Formate dehydrogenase N, gamma subunit (EC 1.2.1.2) |
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fdnG
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Formate dehydrogenase N, alpha subunit (EC 1.2.1.2)
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fdnH
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Formate dehydrogenase N, beta subunit (EC 1.2.1.2)
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fdnI
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Formate dehydrogenase N, gamma subunit (EC 1.2.1.2)
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Position: -81
Score: 4.8 Sequence: TACCTCGTAAGCGGTA
Locus tag: ECA3606
Name: dnrN Funciton: Nitric oxide-dependent regulator DnrN |
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dnrN
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Nitric oxide-dependent regulator DnrN
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Position: -33
Score: 4.3 Sequence: TACCTCTGAAAAGGTA
Locus tag: ECA4519
Name: atpI Funciton: ATP synthase maturation
Locus tag: ECA4518
Name: atpB Funciton: ATP synthase, F0 complex, A chain (EC 3.6.3.14)
Locus tag: ECA4517
Name: atpE Funciton: ATP synthase, F0 complex, C chain (EC 3.6.3.14)
Locus tag: ECA4516
Name: atpF Funciton: ATP synthase, F0 complex, B chain (EC 3.6.3.14)
Locus tag: ECA4515
Name: atpH Funciton: ATP synthase, F1 complex, delta chain (EC 3.6.3.14)
Locus tag: ECA4514
Name: atpA Funciton: ATP synthase, F1 complex, alpha chain (EC 3.6.3.14)
Locus tag: ECA4513
Name: atpG Funciton: ATP synthase, F1 complex, gamma chain (EC 3.6.3.14)
Locus tag: ECA4512
Name: atpD Funciton: ATP synthase, F1 complex, beta chain (EC 3.6.3.14)
Locus tag: ECA4511
Name: atpC Funciton: ATP synthase, F1 complex, epsilon chain (EC 3.6.3.14) |
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atpI
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ATP synthase maturation
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atpB
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ATP synthase, F0 complex, A chain (EC 3.6.3.14)
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atpE
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ATP synthase, F0 complex, C chain (EC 3.6.3.14)
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atpF
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ATP synthase, F0 complex, B chain (EC 3.6.3.14)
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atpH
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ATP synthase, F1 complex, delta chain (EC 3.6.3.14)
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atpA
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ATP synthase, F1 complex, alpha chain (EC 3.6.3.14)
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atpG
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ATP synthase, F1 complex, gamma chain (EC 3.6.3.14)
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atpD
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ATP synthase, F1 complex, beta chain (EC 3.6.3.14)
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atpC
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ATP synthase, F1 complex, epsilon chain (EC 3.6.3.14)
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Position: -194
Score: 4.3 Sequence: TAATTCTTTAGTGGTA
Locus tag: ECA2031
Name: narG Funciton: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Locus tag: ECA2032
Name: narH Funciton: Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Locus tag: ECA2033
Name: narJ Funciton: Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Locus tag: ECA2034
Name: narI Funciton: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4) |
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narG
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Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
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narH
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Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
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narJ
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Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
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narI
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Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
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Position: -246
Score: 4.8 Sequence: TACCCACTAGTGAGTA
Position: -135
Score: 4.3 Sequence: TACTCATTAAGGAGTG
Locus tag: ECA2030
Name: narK Funciton: Nitrate/nitrite antiporter |
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narK
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Nitrate/nitrite antiporter
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Position: -100
Score: 4.8 Sequence: TACCCACAAAGAAGTA
Locus tag: ECA4079
Name: nirB Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: ECA4080
Name: nirD Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: ECA4081
Name: cysG Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) |
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nirB
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Nitrite reductase large subunit (EC 1.7.1.4)
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nirD
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Nitrite reductase small subunit (EC 1.7.1.4)
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cysG
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Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
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Position: -170
Score: 4.2 Sequence: TAACCACAATTGAGTA
Locus tag: ECA1474
Name: yeaR Funciton: Conserved hypothetical protein
Locus tag: ECA1472
Name: yoaG Funciton: Conserved hypothetical protein |
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yeaR
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Conserved hypothetical protein
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yoaG
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Conserved hypothetical protein
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |