Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Yersinia pestis KIM

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 2 2
TF AraC Arabinose Arabinose utilization 3 4
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 13 24
TF BglR Beta-glucoside Beta-glucosides utilization 2 2
TF BirA Biotin Biotin biosynthesis 3 3
TF CelR2 Cellobiose-6-phosphate Cellobiose utilization 1 1
TF Crp Cyclic 3',5'-AMP Carbon catabolism 193 147
TF CueR Copper ion, (Cu+) Copper resistance 3 3
TF DeoR Deoxyribonucleoside utilization 4 2
TF ExuR Galacturonate Galacturonate utilization 8 5
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 4 4
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 12 12
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 64 52
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 31 17
TF Fur Iron ion, (Fe2+) Iron homeostasis 38 53
TF GabR Gamma-aminobutyric acid Gamma-aminobutyrate utilization 1 1
TF GalR/GalS Galactose Galactose utilization 6 3
TF GcvA Glycine Glycine metabolism 2 3
TF GlpR Glycerol 3-phosphate Glycerol utilization 6 4
TF GntR Gluconate Gluconate utilization 7 5
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 7 5
TF HutC cis-Urocanic acid Histidine utilization 5 4
TF IclR Pyruvate; Glyoxylate Glyoxylate bypass 1 1
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 3 4
TF KdgR 2-keto-3-deoxygluconate Pectin and polygalacturonate utlization 23 16
TF LeuO Guanosine 3',5'-bis(diphosphate) 1 2
TF LexA DNA damage SOS response 21 17
TF LfaR Sugar utilization 2 4
TF LsrR 4,5-dihydroxypentan-2,3-dione Quorum sensing; Biofilm formation 2 1
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 2 2
TF MetJ S-adenosylmethionine Methionine metabolism; Methionine biosynthesis 13 9
TF MetR Homocysteine Methionine biosynthesis 8 9
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 8 3
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 3 2
TF NadR NAD NAD biosynthesis 3 1
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 5 7
TF NarP Nitrate; Nitrite Nitrate and nitrite respiration 20 6
TF NhaR Potassium ion Osmotic stress response 1 1
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 5 6
TF NsrR Nitric oxide Nitrosative stress response 8 6
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 10 8
TF PdhR Pyruvate Pyruvate metabolism 6 4
TF PhnF Phosphonate utilization 2 1
TF PurR Hypoxanthine; Guanine Purine metabolism 28 21
TF QorR Energy metabolism 2 1
TF RafR Raffinose Raffinose utilization 2 2
TF RhaR Rhamnose Rhamnose utilization 2 1
TF RhaS Rhamnose Rhamnose utilization 5 3
TF SgaR Ascorbate-6-phosphate Ascorbate utilization 4 6
TF SiaR Glucosamine-6-phosphate Sialic acid utilization 3 3
TF TreR Trehalose-6-phosphate Trehalose utilization 1 1
TF TrpR Tryptophan Tryptophan biosynthesis 6 3
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 8 6
TF UxuR Glucuronate Glucuronate utilization 10 9
TF XltR Xylitol Xylitol utilization 1 1
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 4 4
TF y3436 Sugar utilization 2 2
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 1 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA His_leader Histidine biosynthesis 2 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis 2 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
RNA Thr_leader Threonine biosynthesis 2 1
RNA Trp_leader Tryptophan biosynthesis 2 1
RNA yybP-ykoY 1 1
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