Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Pseudomonas putida KT2440

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF BirA Biotin Biotin biosynthesis 2 2
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 3 2
TF CueR Copper ion, (Cu+) Copper resistance 4 3
TF DesT Unsaturated acyl-CoA; Unsaturated acyl-ACP Fatty acid biosynthesis 2 2
TF EutR Ectoine utilization 3 3
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Fructose utilization 2 2
TF GabR2 Gamma-aminobutyric acid Gamma-aminobutyrate utilization 1 1
TF GcvR Glycine Glycine metabolism 1 3
TF GguR Glucuronate utilization; Glucarate utilization; Galacturonate utilization; Galactarate utilization 5 5
TF GlcC Glycolate Glycolate utilization 2 4
TF GntR Gluconate Gluconate utilization 3 5
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 5 6
TF HexR1 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 5 4
TF HmgR Homogentisate Tyrosine degradation 2 2
TF HutC cis-Urocanic acid Histidine utilization 4 3
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 2 2
TF LexA DNA damage SOS response 18 17
TF LexA2 DNA damage SOS response 2 2
TF LiuR Branched-chain amino acid degradation 3 5
TF LldR L-lactate Lactate utilization 2 2
TF MetR Homocysteine Methionine biosynthesis 7 10
TF ModE Molybdate Molybdenum homeostasis 2 1
TF NikR Nickel ion, (Ni2+) Nickel homeostasis 2 2
TF NorR Nitric oxide Nitrosative stress response 3 5
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 3 5
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 6 8
TF PA1520 Xanthine utilization; Allantoin utilization 9 16
TF PA2299 Alkanesulfonates utilization 1 1
TF PP0486 Metabolite transport 4 4
TF PP2642 1 1
TF PP2948 1 1
TF PdxW2 Pyridoxal-5-phosphate Pyridoxine biosynthesis 1 1
TF PhhR Tyrosine; Phenylalanine Aromatic amino acid metabolism 2 4
TF PhnR Phosphonate utilization; 2-aminoethylphosphonate utilization 3 4
TF PhrR Blue light; Adenosylcobalamin Light-dependent DNA repair 8 8
TF PrpR 2-methylcitrate Methylcitrate utilization 2 2
TF PsrA Oleate Fatty acid degradation 10 12
TF PtxS 2-keto-D-gluconate 2-ketogluconate utilization 3 3
TF RbsR Ribose Ribose utilization 1 1
TF RutR Uracil Pyrimidine utilization 6 2
TF RutR2 Uracil Pyrimidine utilization 3 1
TF RutR3 Uracil Pyrimidine utilization 5 4
TF SahR S-adenosylhomocysteine Methionine metabolism 1 1
TF SdaR D-glycerate Glycerate utilization 2 2
TF SoxR Paraquat Superoxide stress response 5 5
TF UreR 1 2
TF VanR Vanillate Vanillate utilization 2 3
TF YdcR 2 1
TF YjiR 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 9 8
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 8 4
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 2 2
RNA mini-ykkC Multidrug resistance 1 1
RNA yybP-ykoY 1 1
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