Regulon of Cobalamin in Pseudomonas putida KT2440
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Regulog: | Cobalamin - Pseudomonadaceae |
| Under regulation: | |
| - Genes | 18 |
| - Operons | 4 |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -307
Score: 100.8 Sequence: CGTAGCCTTGCCACT...
Locus tag: PP3508
Name: cobW Funciton: CobW GTPase involved in cobalt insertion for B12 biosynthesis
Locus tag: PP3507
Name: null Funciton: CobN component of cobalt chelatase involved in B12 biosynthesis
Locus tag: PP3506
Name: chII Funciton: ChlI component of cobalt chelatase involved in B12 biosynthesis
Locus tag: PP3505
Name: chlD Funciton: ChlD component of cobalt chelatase involved in B12 biosynthesis |
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cobW
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CobW GTPase involved in cobalt insertion for B12 biosynthesis
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CobN component of cobalt chelatase involved in B12 biosynthesis
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chII
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ChlI component of cobalt chelatase involved in B12 biosynthesis
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chlD
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ChlD component of cobalt chelatase involved in B12 biosynthesis
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Position: -258
Score: 119.2 Sequence: CAGATGCGCGCCAGT...
Locus tag: PP2420
Name: btuB Funciton: Outer membrane vitamin B12 receptor BtuB |
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btuB
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Outer membrane vitamin B12 receptor BtuB
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Position: -226
Score: 102.8 Sequence: GTCTACCATGCGGGC...
Locus tag: PP2418
Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF
Locus tag: PP2417
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: PP2416
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD |
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btuF
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Vitamin B12 ABC transporter, B12-binding component BtuF
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btuC
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Vitamin B12 ABC transporter, permease component BtuC
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btuD
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Vitamin B12 ABC transporter, ATPase component BtuD
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Position: -340
Score: 87.4 Sequence: CTTCGCGGCGTGTTT...
Locus tag: PP1672
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
Locus tag: PP1673
Name: cbiA Funciton: Cobyrinic acid A,C-diamide synthase
Locus tag: PP1674
Name: bluB Funciton: Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family
Locus tag: PP1675
Name: cbiB Funciton: Adenosylcobinamide-phosphate synthase
Locus tag: PP1676
Name: cobD Funciton: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
Locus tag: PP1677
Name: cbiP Funciton: Cobyric acid synthase
Locus tag: PP1678
Name: cobU Funciton: Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
Locus tag: PP1679
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
Locus tag: PP1680
Name: cobC Funciton: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
Locus tag: PP1681
Name: cobS Funciton: Cobalamin synthase |
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btuR
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Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
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cbiA
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Cobyrinic acid A,C-diamide synthase
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bluB
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Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family
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cbiB
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Adenosylcobinamide-phosphate synthase
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cobD
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L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81)
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cbiP
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Cobyric acid synthase
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cobU
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Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)
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cobT
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Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
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cobC
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Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
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cobS
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Cobalamin synthase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |