Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PhrR in Pseudomonas putida KT2440

Properties
Regulator type: Transcription factor
TF locus tag: PP0740
Regulator family: MerR
Regulation mode: repressor
Biological process: Light-dependent DNA repair
Effector: Blue light; Adenosylcobalamin
Regulog: PhrR - Pseudomonadaceae
Statistics of regulated genes:
- Genes 15
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 43 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -74
Score: 5.8
Sequence: TATACATAATTTTGGCATTGTACA
Locus tag: PP0742
Name: COG3380
Funciton: Predicted NAD/FAD-dependent oxidoreductase
PP0742
COG3380
Predicted NAD/FAD-dependent oxidoreductase
Position: -136
Score: 5.3
Sequence: TGTACAATGCCAAAATTATGTATA
Locus tag: PP0743
Name: COG1090
Funciton: Predicted nucleoside-diphosphate sugar epimerase
Locus tag: PP0744
Name: hemH
Funciton: Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)
PP0743
COG1090
Predicted nucleoside-diphosphate sugar epimerase
PP0744
hemH
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1)
Position: -35
Score: 4.7
Sequence: TATACAAAAACTTGTACAAGCATG
Position: -23
Score: 5.1
Sequence: TGTACAAGCATGAGAGGTTGTACA
Locus tag: PP2511
Name: null
Funciton: Cell division inhibitor
Locus tag: PP2512
Name: folE
Funciton: GTP cyclohydrolase I (EC 3.5.4.16) type 1
PP2511
Cell division inhibitor
PP2512
folE
GTP cyclohydrolase I (EC 3.5.4.16) type 1
Position: -95
Score: 5.6
Sequence: TATACAAAAATACTAGTTTGCATA
Position: -45
Score: 5
Sequence: TGTACAAGTTTCGAGTCACGTACA
Locus tag: PP0741
Name: COG3272
Funciton: COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
Locus tag: PP0740
Name: phrR
Funciton: Transcriptional regulator, MerR family, associated with photolyase
Locus tag: PP0739
Name: phr
Funciton: Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
Locus tag: PP0738
Name: PF00106
Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
PP0741
COG3272
COG1683: Uncharacterized conserved protein / COG3272: Hypothetical protein YbgA
PP0740
phrR
Transcriptional regulator, MerR family, associated with photolyase
PP0739
phr
Deoxyribodipyrimidine photolyase (EC 4.1.99.3)
PP0738
PF00106
Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Position: -94
Score: 6.1
Sequence: TATACAAGACCGTTGACTTGTATA
Position: -43
Score: 5.7
Sequence: TGTACAACAATTCAATTTTGTACA
Locus tag: PP2738
Name: PF07366
Funciton: Protein of unknown function DUF1486
Locus tag: PP2737
Name: PF00106
Funciton: Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
Locus tag: PP2736
Name: PF01593
Funciton: Flavin containing amine oxidoreductase
Locus tag: PP2735
Name: PF07103
Funciton: Protein of unknown function DUF1365
Locus tag: PP2734
Name: PF02353
Funciton: S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
Locus tag: PP2733
Name: PF11086
Funciton: Protein of unknown function DUF2878
PP2738
PF07366
Protein of unknown function DUF1486
PP2737
PF00106
Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-)
PP2736
PF01593
Flavin containing amine oxidoreductase
PP2735
PF07103
Protein of unknown function DUF1365
PP2734
PF02353
S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase
PP2733
PF11086
Protein of unknown function DUF2878
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