Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Serratia proteamaculans 568

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AbgR p-aminobenzoyl-glutamate p-aminobenzoyl-glutamate utilization 2 2
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 2 2
TF AgaR2 Galactosamine-6-phosphate; N-acetylgalactosamine-6-phosphate N-acetylgalactosamine utilization 2 2
TF AraC Arabinose Arabinose utilization 3 4
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 14 23
TF AscG Cellobiose-6-phosphate; Beta-glucoside-6-phosphate Beta-glucosides utilization; Cellobiose utilization 4 4
TF BetI Choline Glycine betaine synthesis 2 2
TF BirA Biotin Biotin biosynthesis 3 2
TF CelR2 Cellobiose-6-phosphate Cellobiose utilization 1 1
TF Crp Cyclic 3',5'-AMP Carbon catabolism 229 186
TF CscR Sucrose Sucrose utilization 2 2
TF CueR Copper ion, (Cu+) Copper resistance 3 3
TF DeoR Deoxyribonucleoside utilization 5 2
TF DgoR Galactonate Galactonate utilization 2 5
TF EbgR Beta-galactosides Galactosides utilization 3 3
TF ExuR Galacturonate Galacturonate utilization 7 7
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 4 4
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 12 12
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 73 50
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 28 18
TF Fur Iron ion, (Fe2+) Iron homeostasis 46 64
TF GabR Gamma-aminobutyric acid Gamma-aminobutyrate utilization 1 1
TF GalR/GalS Galactose Galactose utilization 5 7
TF GcvA Glycine Glycine metabolism 2 2
TF GlpR Glycerol 3-phosphate Glycerol utilization 5 4
TF GntR Gluconate Gluconate utilization 7 7
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 7 5
TF HpxS Allantoin utilization 1 2
TF HutC cis-Urocanic acid Histidine utilization 5 4
TF IclR Pyruvate; Glyoxylate Glyoxylate bypass 1 1
TF IdnR L-idonate; 5-dehydro-D-gluconate Idonate utilization 2 2
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 2 2
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 3 4
TF KdgR 2-keto-3-deoxygluconate Pectin and polygalacturonate utlization 13 5
TF LeuO Guanosine 3',5'-bis(diphosphate) 1 1
TF LexA DNA damage SOS response 23 19
TF LfaR Sugar utilization 2 4
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 2 2
TF MalI Maltose utilization 2 4
TF MetJ S-adenosylmethionine Methionine metabolism; Methionine biosynthesis 21 18
TF MetR Homocysteine Methionine biosynthesis 11 14
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 7 2
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 6 5
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 2 2
TF NadR NAD NAD biosynthesis 4 4
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 6 4
TF NarP Nitrate; Nitrite Nitrate and nitrite respiration 20 13
TF NhaR Potassium ion Osmotic stress response 2 1
TF NorR Nitric oxide Nitrosative stress response 2 3
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 3 6
TF NsrR Nitric oxide Nitrosative stress response 6 2
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 12 14
TF PaaX Phenylacetyl-CoA Phenylacetic acid degradation 2 4
TF PdhR Pyruvate Pyruvate metabolism 5 3
TF PdxR2 Pyridoxal-5-phosphate Pyridoxine/pyridoxal homeostasis 2 2
TF PhnF Phosphonate utilization 1 1
TF PhnR1 2-aminoethylphosphonate 2-aminoethylphosphonate utilization 2 2
TF PtxS 2-keto-D-gluconate 2-ketogluconate utilization 1 1
TF PurR Hypoxanthine; Guanine Purine metabolism 29 23
TF RbsR Ribose Ribose utilization 1 2
TF RspR L-gulonate; D-mannonate L-gulonate utilization 1 1
TF RutR Uracil Pyrimidine utilization 3 2
TF STM1555 Sugar utilization 1 1
TF ScrR Sucrose-6-phosphate Sucrose utilization 2 3
TF Spro_0112 1 2
TF Spro_0637 2 4
TF Spro_1420 Nitrogen metabolism 2 1
TF Spro_2017 1 1
TF Spro_3347 Metabolite transport 1 1
TF Spro_3719 1 1
TF SrlR Sorbitol-6-phosphate Sorbitol utilization 1 1
TF TreR Trehalose-6-phosphate Trehalose utilization 1 1
TF TrpR Tryptophan Tryptophan biosynthesis 7 3
TF TtrR Tetrathionate Tetrathionate reduction 2 2
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 10 8
TF YE4144 Metabolite transport 1 1
TF YdcR 2 2
TF YiaJ Ascorbate-6-phosphate L-lyxose utilization 2 2
TF YihL 1 1
TF YjiR 1 1
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 9 10
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 1 1
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 1 1
RNA His_leader Histidine biosynthesis 1 1
RNA Leu_leader Branched-chain amino acid biosynthesis 1 1
RNA Lysine Lysine Lysine biosynthesis 1 1
RNA MOCO_RNA_motif Molybdenum Molybdopterin biosynthesis 1 1
RNA S15 Ribosome biogenesis 1 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 4 4
RNA Thr_leader Threonine biosynthesis 1 1
RNA Trp_leader Tryptophan biosynthesis 1 1
RNA mini-ykkC Multidrug resistance 1 1
RNA ykoK Magnesium ion, (Mg2+) Magnesium homeostasis 1 1
RNA yybP-ykoY 2 2
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