Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Serratia proteamaculans 568

Properties
Regulator type: Transcription factor
TF locus tag: Spro_3490
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrate; Nitrite
Regulog: NarP - Enterobacteriales
Statistics of regulated genes:
- Genes 46
- Operons 12
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 125 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -240
Score: 4.6
Sequence: TACCTCTAACGAAGTA
Locus tag: Spro_2898
Name: narK
Funciton: Nitrate/nitrite antiporter
Spro_2898
narK
Nitrate/nitrite antiporter
Position: -243
Score: 4.8
Sequence: TCCCCCTAAAGGGGTA
Locus tag: Spro_3489
Name: narQ
Funciton: Nitrate/nitrite sensor kinase NarQ (EC 2.7.3.-)
Locus tag: Spro_3490
Name: narP
Funciton: Nitrate/nitrite response regulator protein NarP, LuxR family
Spro_3489
narQ
Nitrate/nitrite sensor kinase NarQ (EC 2.7.3.-)
Spro_3490
narP
Nitrate/nitrite response regulator protein NarP, LuxR family
Position: -138
Score: 4.7
Sequence: TACTTCGTTAGAGGTA
Locus tag: Spro_2899
Name: narX
Funciton: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Locus tag: Spro_2900
Name: narL
Funciton: Nitrate/nitrite response regulator protein NarL, LuxR family
Spro_2899
narX
Nitrate/nitrite sensor protein NarX (EC 2.7.3.-)
Spro_2900
narL
Nitrate/nitrite response regulator protein NarL, LuxR family
Position: -198
Score: 4.2
Sequence: TACCTCGTAAATGGTA
Locus tag: Spro_4012
Name: pdhR
Funciton: Pyruvate utilization transcriptional regulator PdhR, GntR family
Locus tag: Spro_4011
Name: aceE
Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: Spro_4010
Name: aceF
Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Locus tag: Spro_4009
Name: lpd
Funciton: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
Spro_4012
pdhR
Pyruvate utilization transcriptional regulator PdhR, GntR family
Spro_4011
aceE
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Spro_4010
aceF
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Spro_4009
lpd
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4)
Position: -33
Score: 4.6
Sequence: TACCTCCTCAGGGGTA
Locus tag: Spro_0001
Name: atpI
Funciton: ATP synthase maturation
Locus tag: Spro_0002
Name: atpB
Funciton: ATP synthase, F0 complex, A chain (EC 3.6.3.14)
Locus tag: Spro_0003
Name: atpE
Funciton: ATP synthase, F0 complex, C chain (EC 3.6.3.14)
Locus tag: Spro_0004
Name: atpF
Funciton: ATP synthase, F0 complex, B chain (EC 3.6.3.14)
Locus tag: Spro_0005
Name: atpH
Funciton: ATP synthase, F1 complex, delta chain (EC 3.6.3.14)
Locus tag: Spro_0006
Name: atpA
Funciton: ATP synthase, F1 complex, alpha chain (EC 3.6.3.14)
Locus tag: Spro_0007
Name: atpG
Funciton: ATP synthase, F1 complex, gamma chain (EC 3.6.3.14)
Locus tag: Spro_0008
Name: atpD
Funciton: ATP synthase, F1 complex, beta chain (EC 3.6.3.14)
Locus tag: Spro_0009
Name: atpC
Funciton: ATP synthase, F1 complex, epsilon chain (EC 3.6.3.14)
Spro_0001
atpI
ATP synthase maturation
Spro_0002
atpB
ATP synthase, F0 complex, A chain (EC 3.6.3.14)
Spro_0003
atpE
ATP synthase, F0 complex, C chain (EC 3.6.3.14)
Spro_0004
atpF
ATP synthase, F0 complex, B chain (EC 3.6.3.14)
Spro_0005
atpH
ATP synthase, F1 complex, delta chain (EC 3.6.3.14)
Spro_0006
atpA
ATP synthase, F1 complex, alpha chain (EC 3.6.3.14)
Spro_0007
atpG
ATP synthase, F1 complex, gamma chain (EC 3.6.3.14)
Spro_0008
atpD
ATP synthase, F1 complex, beta chain (EC 3.6.3.14)
Spro_0009
atpC
ATP synthase, F1 complex, epsilon chain (EC 3.6.3.14)
Position: -252
Score: 4
Sequence: TACCCAAGAGTAGTTA
Locus tag: Spro_2704
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Spro_2704
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -193
Score: 3.8
Sequence: TGATACTTTAGGGGTA
Locus tag: Spro_2883
Name: narG
Funciton: Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Locus tag: Spro_2882
Name: narH
Funciton: Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Locus tag: Spro_2881
Name: narJ
Funciton: Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Locus tag: Spro_2880
Name: narI
Funciton: Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
Spro_2883
narG
Respiratory nitrate reductase, alpha chain (EC 1.7.99.4)
Spro_2882
narH
Respiratory nitrate reductase, beta chain (EC 1.7.99.4)
Spro_2881
narJ
Respiratory nitrate reductase, delta chain (EC 1.7.99.4)
Spro_2880
narI
Respiratory nitrate reductase, gamma chain (EC 1.7.99.4)
Position: -28
Score: 4.5
Sequence: TACCCGTAAGTAGGTA
Locus tag: Spro_2674
Name: ompW
Funciton: Outer membrane protein W precursor
Spro_2674
ompW
Outer membrane protein W precursor
Position: -143
Score: 4.3
Sequence: TACCCACTTCTGAGTA
Locus tag: Spro_1687
Name: dmsA
Funciton: Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Locus tag: Spro_1688
Name: dmsB
Funciton: Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Locus tag: Spro_1689
Name: dmsC
Funciton: Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
Locus tag: Spro_1690
Name: dmsD
Funciton: Dimethyl sulfoxide reductase chaperone protein dmsD
Spro_1687
dmsA
Dimethyl sulfoxide reductase, chain A (EC 1.8.99.-)
Spro_1688
dmsB
Dimethyl sulfoxide reductase, chain B (EC 1.8.99.-)
Spro_1689
dmsC
Dimethyl sulfoxide reductase, chain C (EC 1.8.99.-)
Spro_1690
dmsD
Dimethyl sulfoxide reductase chaperone protein dmsD
Position: -197
Score: 4.5
Sequence: TACTCCCGAATGGGTA
Position: -101
Score: 4.5
Sequence: TACCACATTAGAGGTA
Locus tag: Spro_4595
Name: nirB
Funciton: Nitrite reductase large subunit (EC 1.7.1.4)
Locus tag: Spro_4596
Name: nirD
Funciton: Nitrite reductase small subunit (EC 1.7.1.4)
Locus tag: Spro_4597
Name: nirC
Funciton: Nitrite transporter, FNT family
Locus tag: Spro_4598
Name: cysG
Funciton: Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Spro_4595
nirB
Nitrite reductase large subunit (EC 1.7.1.4)
Spro_4596
nirD
Nitrite reductase small subunit (EC 1.7.1.4)
Spro_4597
nirC
Nitrite transporter, FNT family
Spro_4598
cysG
Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Position: -49
Score: 4.9
Sequence: TACCCCTATTGGAGTA
Locus tag: Spro_3391
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Spro_3390
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Spro_3389
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Spro_3388
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Spro_3387
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: Spro_3386
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
Locus tag: Spro_3385
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: Spro_3384
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Locus tag: Spro_3383
Name: ccmH
Funciton: Cytochrome c heme lyase, subunit CcmH
Spro_3391
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Spro_3390
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Spro_3389
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Spro_3388
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Spro_3387
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
Spro_3386
ccmF
Cytochrome c heme lyase, subunit CcmF
Spro_3385
ccmG
Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Spro_3384
ccmH
Cytochrome c heme lyase, subunit CcmH
Spro_3383
ccmH
Cytochrome c heme lyase, subunit CcmH
Position: -322
Score: 4.7
Sequence: TACCCCTTTAGGGGGA
Locus tag: Spro_3488
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: Spro_3487
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: Spro_3486
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Spro_3485
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: Spro_3484
Name: napC
Funciton: Cytochrome c-type protein NapC
Spro_3488
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
Spro_3487
napD
Periplasmic nitrate reductase component NapD
Spro_3486
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Spro_3485
napB
Nitrate reductase cytochrome c550-type subunit
Spro_3484
napC
Cytochrome c-type protein NapC
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