Regulon of NtrC in Serratia proteamaculans 568
| Regulator type: | Transcription factor |
| TF locus tag: | Spro_4883 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Enterobacteriales |
| Statistics of regulated genes: | |
| - Genes | 35 |
| - Operons | 9 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Enterobacteriales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -29
Score: 5.8 Sequence: TGCACTAAAAAGGTGCA
Locus tag: Spro_4882
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: Spro_4883
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family |
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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Position: -220
Score: 5.2 Sequence: TGCACCATTACAGTGCT
Position: -188
Score: 5.2 Sequence: TGCACCATTTAAGTGCA
Locus tag: Spro_4881
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Position: -230
Score: 3.9 Sequence: TGCACCTTTAATGAGCA
Locus tag: Spro_1823
Name: rutA Funciton: Pyrimidine oxygenase
Locus tag: Spro_1822
Name: rutB Funciton: Peroxyureidoacrylate / ureidoacrylate amido hydrolase
Locus tag: Spro_1821
Name: rutC Funciton: Aminoacrylate peracid reductase
Locus tag: Spro_1820
Name: rutD Funciton: Aminoacrylate hydrolase
Locus tag: Spro_1819
Name: rutF Funciton: Flavin reductase
Locus tag: Spro_1818
Name: rutG Funciton: Uracil permease |
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rutA
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Pyrimidine oxygenase
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rutB
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Peroxyureidoacrylate / ureidoacrylate amido hydrolase
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rutC
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Aminoacrylate peracid reductase
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rutD
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Aminoacrylate hydrolase
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rutF
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Flavin reductase
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rutG
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Uracil permease
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Position: -204
Score: 4.4 Sequence: TGCCCAATTGTTGTGCA
Locus tag: Spro_2345
Name: CKO_01526 Funciton: Predicted transcriptional regulator, RpiR family
Locus tag: Spro_2346
Name: ddpX Funciton: D-alanyl-D-alanine dipeptidase (EC 3.4.13.-)
Locus tag: Spro_2347
Name: ddpA Funciton: Dipeptide ABC transporter, substrate-binding component (TC 3.A.1.5.2)
Locus tag: Spro_2348
Name: ddpB Funciton: Dipeptide ABC transporter, transmembrane component 1 (TC 3.A.1.5.2)
Locus tag: Spro_2349
Name: ddpC Funciton: Dipeptide ABC transporter, transmembrane component 2 (TC 3.A.1.5.2)
Locus tag: Spro_2350
Name: ddpD Funciton: Dipeptide ABC transporter, transmembrane component 3 (TC 3.A.1.5.2)
Locus tag: Spro_2351
Name: ddpF Funciton: Dipeptide ABC transporter, ABC-binding component (TC 3.A.1.5.2) |
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CKO_01526
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Predicted transcriptional regulator, RpiR family
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ddpX
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D-alanyl-D-alanine dipeptidase (EC 3.4.13.-)
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ddpA
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Dipeptide ABC transporter, substrate-binding component (TC 3.A.1.5.2)
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ddpB
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Dipeptide ABC transporter, transmembrane component 1 (TC 3.A.1.5.2)
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ddpC
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Dipeptide ABC transporter, transmembrane component 2 (TC 3.A.1.5.2)
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ddpD
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Dipeptide ABC transporter, transmembrane component 3 (TC 3.A.1.5.2)
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ddpF
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Dipeptide ABC transporter, ABC-binding component (TC 3.A.1.5.2)
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Position: -192
Score: 5.3 Sequence: CGCACCAAAGTAGTGCG
Locus tag: Spro_1109
Name: glnK Funciton: nitrogen regulatory protein P-II
Locus tag: Spro_1110
Name: amtB Funciton: Ammonium transporter |
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glnK
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nitrogen regulatory protein P-II
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amtB
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Ammonium transporter
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Position: -212
Score: 4.8 Sequence: GGCACCATAAGGGTGCA
Position: -183
Score: 5 Sequence: TGCATTAATTTGGTGCG
Locus tag: Spro_1214
Name: gltI Funciton: Glutamate-aspartate ABC transporter, substrate-binding component
Locus tag: Spro_1213
Name: gltJ Funciton: Glutamate-aspartate ABC transporter, transmembrane component 1
Locus tag: Spro_1212
Name: gltK Funciton: Glutamate-aspartate ABC transporter, transmembrane component 2
Locus tag: Spro_1211
Name: gltL Funciton: Glutamate-aspartate ABC transporter, ATP-binding component |
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gltI
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Glutamate-aspartate ABC transporter, substrate-binding component
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gltJ
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Glutamate-aspartate ABC transporter, transmembrane component 1
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gltK
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Glutamate-aspartate ABC transporter, transmembrane component 2
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gltL
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Glutamate-aspartate ABC transporter, ATP-binding component
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Position: -265
Score: 4.4 Sequence: CGCACTGAATTAGGGCG
Position: -243
Score: 4.3 Sequence: TGCACCATAATGATCCC
Locus tag: Spro_3326
Name: hisJ Funciton: Histidine ABC transporter, substrate-binding component
Locus tag: Spro_3325
Name: hisQ Funciton: Histidine ABC transporter, transmembrane component 1
Locus tag: Spro_3324
Name: hisM Funciton: Histidine ABC transporter, transmembrane component 2
Locus tag: Spro_3323
Name: hisP Funciton: Histidine ABC transporter, ATP-binding component |
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hisJ
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Histidine ABC transporter, substrate-binding component
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hisQ
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Histidine ABC transporter, transmembrane component 1
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hisM
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Histidine ABC transporter, transmembrane component 2
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hisP
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Histidine ABC transporter, ATP-binding component
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Position: -176
Score: 4.2 Sequence: AGCACCATTTTGGGGCC
Position: -163
Score: 4.3 Sequence: GGCCTCAATTTGGTGCA
Locus tag: Spro_1479
Name: glnH Funciton: Glutamine ABC transporter, substrate-binding component
Locus tag: Spro_1478
Name: glnP Funciton: Glutamine ABC transporter, transmembrane component
Locus tag: Spro_1477
Name: glnQ Funciton: Glutamine ABC transporter, ATP-binding component |
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glnH
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Glutamine ABC transporter, substrate-binding component
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glnP
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Glutamine ABC transporter, transmembrane component
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glnQ
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Glutamine ABC transporter, ATP-binding component
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Position: -214
Score: 4.5 Sequence: AGCGCCATTTTGGTGCT
Position: -195
Score: 4.5 Sequence: CGCACTTTGATGGTGCG
Locus tag: Spro_0932
Name: EAM_0872 Funciton: Predicted ABC transporter, substrate-binding component
Locus tag: Spro_0933
Name: EAM_0873 Funciton: Predicted ABC transporter, permease component 1
Locus tag: Spro_0934
Name: EAM_0874 Funciton: Predicted ABC transporter, permease component 2
Locus tag: Spro_0935
Name: EAM_0875 Funciton: Predicted ABC transporter, ATP-binding component
Locus tag: Spro_0936
Name: pucG Funciton: Serine--pyruvate aminotransferase (EC 2.6.1.51) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)
Locus tag: Spro_0937
Name: amaB Funciton: N-carbamoyl-L-amino acid hydrolase |
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EAM_0872
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Predicted ABC transporter, substrate-binding component
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EAM_0873
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Predicted ABC transporter, permease component 1
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EAM_0874
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Predicted ABC transporter, permease component 2
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EAM_0875
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Predicted ABC transporter, ATP-binding component
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pucG
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Serine--pyruvate aminotransferase (EC 2.6.1.51) / L-alanine:glyoxylate aminotransferase (EC 2.6.1.44)
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amaB
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N-carbamoyl-L-amino acid hydrolase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |