Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Crp in Serratia proteamaculans 568

Properties
Regulator type: Transcription factor
TF locus tag: Spro_4580
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Regulog: Crp - Enterobacteriales
Statistics of regulated genes:
- Genes 283
- Operons 148
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 2301 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -121
Score: 4.3
Sequence: AATCTTGACCGGGTTCACGTTA
Locus tag: Spro_1560
Name: folE
Funciton: GTP cyclohydrolase I
Locus tag: Spro_1561
Name: yeiB
Funciton: conserved inner membrane protein
Spro_1560
folE
GTP cyclohydrolase I
Spro_1561
yeiB
conserved inner membrane protein
Position: -121
Score: 3.5
Sequence: ATTTATGACACGCCTCAAAACC
Locus tag: Spro_4580
Name: crp
Funciton: cyclic AMP receptor protein
Spro_4580
crp
cyclic AMP receptor protein
Position: -271
Score: 5.1
Sequence: TTAAGTGATGGAAATCACAAAT
Position: -196
Score: 3.8
Sequence: TTTTGTTAGCCAGATCTCTCTT
Locus tag: Spro_3381
Name: fadL
Funciton: Long-chain fatty acid transport protein
Spro_3381
fadL
Long-chain fatty acid transport protein
Position: -261
Score: 3.4
Sequence: TAATCTAATCATCATCAAACAC
Locus tag: Spro_0832
Name: rpoS
Funciton: RNA polymerase sigma factor RpoS
Spro_0832
rpoS
RNA polymerase sigma factor RpoS
Position: -195
Score: 5.2
Sequence: AAATGTGATGTATATCACTATA
Position: -151
Score: 4.5
Sequence: GTTGGTGATCTGCATCACAAAA
Locus tag: Spro_0072
Name: mtlA
Funciton: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Locus tag: Spro_0073
Name: mtlD
Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
Locus tag: Spro_0074
Name: mtlR
Funciton: Mannitol operon repressor
Spro_0072
mtlA
PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Spro_0073
mtlD
Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
Spro_0074
mtlR
Mannitol operon repressor
Position: -276
Score: 3.4
Sequence: AAAGGTGGTGTTCATATCAATA
Locus tag: Spro_3633
Name: csiE
Funciton: Stationary phase inducible protein CsiE
Spro_3633
csiE
Stationary phase inducible protein CsiE
Position: -95
Score: 3.6
Sequence: TTTTGTGATCCCGTCGGCATTG
Position: -63
Score: 3.5
Sequence: TTCTGTGAATTTTACTAAATAT
Locus tag: Spro_1973
Name: ebgA
Funciton: cryptic beta-D-galactosidase, alpha subunit
Locus tag: Spro_1974
Name: ebgC
Funciton: cryptic beta-D-galactosidase, beta subunit
Spro_1973
ebgA
cryptic beta-D-galactosidase, alpha subunit
Spro_1974
ebgC
cryptic beta-D-galactosidase, beta subunit
Position: -37
Score: 4.9
Sequence: ATCTGTGATCTAAATCACTTTT
Locus tag: Spro_4393
Name: aaeR
Funciton: LysR-family transcriptional regulator
Spro_4393
aaeR
LysR-family transcriptional regulator
Position: -125
Score: 3.8
Sequence: TCACATGATGTTAATCATAAAT
Locus tag: Spro_3316
Name: ackA
Funciton: acetate kinase
Locus tag: Spro_3317
Name: pta
Funciton: phosphate acetyltransferase
Spro_3316
ackA
acetate kinase
Spro_3317
pta
phosphate acetyltransferase
Position: -97
Score: 4
Sequence: TTGCGTGATCTGCCGCCCAAAA
Locus tag: Spro_0297
Name: acs
Funciton: acetyl-coenzyme A synthetase
Locus tag: Spro_0296
Name: yjcH
Funciton: membrane protein
Locus tag: Spro_0295
Name: actP
Funciton: acetate permease
Spro_0297
acs
acetyl-coenzyme A synthetase
Spro_0296
yjcH
membrane protein
Spro_0295
actP
acetate permease
Position: -278
Score: 5.1
Sequence: TTTTATGATTTAAATCACAAAA
Locus tag: Spro_2704
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Spro_2704
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Position: -132
Score: 3.9
Sequence: ACTTATGACAGCCGTCACAAAA
Locus tag: Spro_2244
Name: araB
Funciton: L-ribulokinase
Locus tag: Spro_2243
Name: araA
Funciton: L-arabinose isomerase
Spro_2244
araB
L-ribulokinase
Spro_2243
araA
L-arabinose isomerase
Position: -251
Score: 3.8
Sequence: TTTTGTGACGGCTGTCATAAGT
Locus tag: Spro_2245
Name: araF
Funciton: L-arabinose-binding periplasmic protein
Locus tag: Spro_2246
Name: araG
Funciton: L-arabinose transporter ATP-binding protein
Locus tag: Spro_2247
Name: araH
Funciton: L-arabinose transporter permease protein
Spro_2245
araF
L-arabinose-binding periplasmic protein
Spro_2246
araG
L-arabinose transporter ATP-binding protein
Spro_2247
araH
L-arabinose transporter permease protein
Position: -71
Score: 4.3
Sequence: TATTGTATTTTTATTCACAATA
Locus tag: Spro_4782
Name: argE
Funciton: acetylornithine deacetylase
Spro_4782
argE
acetylornithine deacetylase
Position: -135
Score: 3.9
Sequence: TTTTGTGCTTTTTTTAGCGATT
Position: -64
Score: 4.3
Sequence: TATTGTGATCGCCATCACTTCC
Locus tag: Spro_2172
Name: aroH
Funciton: phospho-2-dehydro-3-deoxyheptonate aldolase
Spro_2172
aroH
phospho-2-dehydro-3-deoxyheptonate aldolase
Position: -189
Score: 4.4
Sequence: AAAAGTGACCACCATCACGAAA
Locus tag: Spro_0576
Name: ascF
Funciton: hypothetical protein
Locus tag: Spro_0575
Name: ascB
Funciton: 6-phospho-beta-glucosidase
Spro_0576
ascF
hypothetical protein
Spro_0575
ascB
6-phospho-beta-glucosidase
Position: -205
Score: 4.7
Sequence: AAACGTGAATGAGATCACAGAA
Locus tag: Spro_0406
Name: aspA
Funciton: aspartate ammonia-lyase
Locus tag: Spro_0405
Name: dcuA
Funciton: anaerobic C-4-dicarboxylate symporter
Spro_0406
aspA
aspartate ammonia-lyase
Spro_0405
dcuA
anaerobic C-4-dicarboxylate symporter
Position: -265
Score: 4.4
Sequence: TATTGTGAGCAACTACACGTTT
Locus tag: Spro_0001
Name: atpI
Funciton: ATP synthase subunit I
Locus tag: Spro_0002
Name: atpB
Funciton: ATP synthase subunit A
Locus tag: Spro_0003
Name: atpE
Funciton: ATP synthase subunit C
Locus tag: Spro_0004
Name: atpF
Funciton: ATP synthase subunit B
Locus tag: Spro_0005
Name: atpH
Funciton: ATP synthase subunit D
Locus tag: Spro_0006
Name: atpA
Funciton: ATP synthase subunit A
Locus tag: Spro_0007
Name: atpG
Funciton: ATP synthase subunit C
Locus tag: Spro_0008
Name: atpD
Funciton: ATP synthase subunit B
Locus tag: Spro_0009
Name: atpC
Funciton: ATP synthase epsilon subunit
Spro_0001
atpI
ATP synthase subunit I
Spro_0002
atpB
ATP synthase subunit A
Spro_0003
atpE
ATP synthase subunit C
Spro_0004
atpF
ATP synthase subunit B
Spro_0005
atpH
ATP synthase subunit D
Spro_0006
atpA
ATP synthase subunit A
Spro_0007
atpG
ATP synthase subunit C
Spro_0008
atpD
ATP synthase subunit B
Spro_0009
atpC
ATP synthase epsilon subunit
Position: -127
Score: 4.1
Sequence: ACTTGCGATACATCTCGCAATT
Position: -77
Score: 4.5
Sequence: TAAAGAGATTTACATCACACTT
Locus tag: Spro_1568
Name: cdd
Funciton: cytidine deaminase
Spro_1568
cdd
cytidine deaminase
Position: -177
Score: 4.6
Sequence: ATTTGCGAGACAGATCACACTA
Position: -143
Score: 3.6
Sequence: AAATGTGAAGAGGGTCAATCAG
Locus tag: Spro_0834
Name: chbB
Funciton: N,N'-diacetylchitobiose-specific PTS system , EIIB component
Locus tag: Spro_0835
Name: chbC
Funciton: N,N'-diacetylchitobiose-specific PTS system , EIIC component
Locus tag: Spro_0836
Name: chbF
Funciton: 6-phospho-beta-glucosidase (cellobiose-6-phosphate hydrolase)
Locus tag: Spro_0837
Name: chbR
Funciton: DNA-binding transcriptional dual regulator
Locus tag: Spro_0838
Name: ydjC
Funciton: hypothetical protein
Spro_0834
chbB
N,N'-diacetylchitobiose-specific PTS system , EIIB component
Spro_0835
chbC
N,N'-diacetylchitobiose-specific PTS system , EIIC component
Spro_0836
chbF
6-phospho-beta-glucosidase (cellobiose-6-phosphate hydrolase)
Spro_0837
chbR
DNA-binding transcriptional dual regulator
Spro_0838
ydjC
hypothetical protein
Position: -272
Score: 4.6
Sequence: TGCTGTGATTTTGTTCAAAATA
Locus tag: Spro_3731
Name: citA
Funciton: signal transduction histidine kinase regulating citrate/malate metabolism
Locus tag: Spro_3732
Name: citB
Funciton: response regulator receiver and unknown domain protein
Spro_3731
citA
signal transduction histidine kinase regulating citrate/malate metabolism
Spro_3732
citB
response regulator receiver and unknown domain protein
Position: -110
Score: 3.9
Sequence: GTTCGTGACTGCGATCATATTT
Locus tag: Spro_0060
Name: CKO_05006
Funciton: Xylose isomerase domain protein TIM barrel
Locus tag: Spro_0059
Name: CKO_05007
Funciton: PfkB domain protein
Locus tag: Spro_0058
Name: CKO_05008
Funciton: major facilitator superfamily MFS_1
Locus tag: Spro_0057
Name: tkrA
Funciton: 2-hydroxyacid dehydrogenase
Spro_0060
CKO_05006
Xylose isomerase domain protein TIM barrel
Spro_0059
CKO_05007
PfkB domain protein
Spro_0058
CKO_05008
major facilitator superfamily MFS_1
Spro_0057
tkrA
2-hydroxyacid dehydrogenase
Position: -176
Score: 3.6
Sequence: AAGTTTGAAGCAGGTAACGCTA
Locus tag: Spro_1673
Name: clpS
Funciton: ATP-dependent Clp protease adaptor protein
Locus tag: Spro_1674
Name: clpA
Funciton: ATP-dependent CLP protease ATP-binding subunit
Spro_1673
clpS
ATP-dependent Clp protease adaptor protein
Spro_1674
clpA
ATP-dependent CLP protease ATP-binding subunit
Position: -158
Score: 3.8
Sequence: CAGTGTGACCGCCCGCTCATTT
Locus tag: Spro_0774
Name: coaE
Funciton: dephospho-CoA kinase
Locus tag: Spro_0773
Name: yacF
Funciton: hypothetical protein
Locus tag: Spro_0772
Name: yacG
Funciton: zinc-binding protein
Spro_0774
coaE
dephospho-CoA kinase
Spro_0773
yacF
hypothetical protein
Spro_0772
yacG
zinc-binding protein
Position: -95
Score: 3.8
Sequence: TTTTCTGCCACACTTCACAGTT
Locus tag: Spro_0453
Name: cpdB
Funciton: 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
Spro_0453
cpdB
2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
Position: -75
Score: 3.8
Sequence: TTCTGTGACCTAAAACATAAAC
Locus tag: Spro_0680
Name: creA
Funciton: hypothetical protein
Spro_0680
creA
hypothetical protein
Position: -205
Score: 4
Sequence: TAGCGTTACCTGCTTCAAACTT
Position: -49
Score: 3.9
Sequence: TTCAGTTATTCATCTCACCTAA
Locus tag: Spro_1672
Name: cspD
Funciton: cold shock-like protein
Spro_1672
cspD
cold shock-like protein
Position: -300
Score: 3.7
Sequence: AAGTCTAACCCACATCACGTAA
Locus tag: Spro_1271
Name: cydA
Funciton: cytochrome d terminal oxidase, polypeptide subunit I
Locus tag: Spro_1272
Name: cydB
Funciton: cytochrome D ubiquinol oxidase subunit II
Locus tag: Spro_1273
Name: ybgT
Funciton: hypothetical protein
Locus tag: Spro_1274
Name: ybgE
Funciton: hypothetical protein
Spro_1271
cydA
cytochrome d terminal oxidase, polypeptide subunit I
Spro_1272
cydB
cytochrome D ubiquinol oxidase subunit II
Spro_1273
ybgT
hypothetical protein
Spro_1274
ybgE
hypothetical protein
Position: -135
Score: 4.2
Sequence: ATCTGTGACCCCCTTAACAGAA
Locus tag: Spro_1090
Name: cyoA
Funciton: cytochrome o ubiquinol oxidase subunit II
Locus tag: Spro_1089
Name: cyoB
Funciton: cytochrome o ubiquinol oxidase subunit I
Locus tag: Spro_1088
Name: cyoC
Funciton: cytochrome o ubiquinol oxidase subunit III
Locus tag: Spro_1087
Name: cyoD
Funciton: cytochrome o ubiquinol oxidase subunit IV
Locus tag: Spro_1086
Name: cyoE
Funciton: protoheme IX farnesyltransferase
Spro_1090
cyoA
cytochrome o ubiquinol oxidase subunit II
Spro_1089
cyoB
cytochrome o ubiquinol oxidase subunit I
Spro_1088
cyoC
cytochrome o ubiquinol oxidase subunit III
Spro_1087
cyoD
cytochrome o ubiquinol oxidase subunit IV
Spro_1086
cyoE
protoheme IX farnesyltransferase
Position: -180
Score: 3.7
Sequence: AACTGTGAAGTGTGGCAGAAAA
Locus tag: Spro_0454
Name: cysQ
Funciton: PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
Spro_0454
cysQ
PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase
Position: -113
Score: 4.6
Sequence: AATTGTGAATGTTGTCACGTTT
Locus tag: Spro_2746
Name: dadA
Funciton: D-amino acid dehydrogenase small subunit
Locus tag: Spro_2745
Name: dadX
Funciton: alanine racemase
Spro_2746
dadA
D-amino acid dehydrogenase small subunit
Spro_2745
dadX
alanine racemase
Position: -96
Score: 4.8
Sequence: TAATTTGAGCCGGTTCACACTT
Locus tag: Spro_0495
Name: deaD
Funciton: ATP-independent RNA helicase
Spro_0495
deaD
ATP-independent RNA helicase
Position: -262
Score: 4.6
Sequence: ATTTGTGAACGATATCGCGTTA
Position: -240
Score: 5.5
Sequence: TTTTGTGATGGTCTTCACATAT
Position: -188
Score: 3.8
Sequence: TAGTGTGACTGTGAACGCGAAT
Locus tag: Spro_0660
Name: deoC
Funciton: 2-deoxyribose-5-phosphate aldolase
Locus tag: Spro_0661
Name: deoA
Funciton: thymidine phosphorylase
Locus tag: Spro_0662
Name: deoB
Funciton: phosphopentomutase
Locus tag: Spro_0663
Name: deoD
Funciton: purine nucleoside phosphorylase
Spro_0660
deoC
2-deoxyribose-5-phosphate aldolase
Spro_0661
deoA
thymidine phosphorylase
Spro_0662
deoB
phosphopentomutase
Spro_0663
deoD
purine nucleoside phosphorylase
Position: -103
Score: 4.2
Sequence: TTTTGTGATCTTGATTGTAGTA
Locus tag: Spro_0041
Name: dgoR
Funciton: GntR domain protein
Locus tag: Spro_0042
Name: dgoK
Funciton: 2-dehydro-3-deoxygalactonokinase
Locus tag: Spro_0043
Name: dgoA2
Funciton: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase
Locus tag: Spro_0044
Name: dgoA1
Funciton: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein
Locus tag: Spro_0045
Name: dgoT
Funciton: D-galactonate transport
Spro_0041
dgoR
GntR domain protein
Spro_0042
dgoK
2-dehydro-3-deoxygalactonokinase
Spro_0043
dgoA2
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
Spro_0044
dgoA1
Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein
Spro_0045
dgoT
D-galactonate transport
Position: -271
Score: 3.8
Sequence: TTGTTTGCTGTTTCTCACAGTC
Locus tag: Spro_0138
Name: dppA
Funciton: dipeptide ABC transporter, substrate-binding protein
Locus tag: Spro_0139
Name: dppB
Funciton: dipeptide ABC transporter, permease protein
Locus tag: Spro_0140
Name: dppC
Funciton: dipeptide transporter
Locus tag: Spro_0141
Name: dppD
Funciton: dipeptide transporter ATP-binding subunit
Locus tag: Spro_0142
Name: dppF
Funciton: dipeptide transporter ATP-binding subunit
Spro_0138
dppA
dipeptide ABC transporter, substrate-binding protein
Spro_0139
dppB
dipeptide ABC transporter, permease protein
Spro_0140
dppC
dipeptide transporter
Spro_0141
dppD
dipeptide transporter ATP-binding subunit
Spro_0142
dppF
dipeptide transporter ATP-binding subunit
Position: -174
Score: 4.8
Sequence: ACATGTGACCCAGATCAAATTT
Locus tag: Spro_3596
Name: guaB
Funciton: inosine-5'-monophosphate dehydrogenase
Locus tag: Spro_3595
Name: guaA
Funciton: bifunctional GMP synthase/glutamine amidotransferase protein
Spro_3596
guaB
inosine-5'-monophosphate dehydrogenase
Spro_3595
guaA
bifunctional GMP synthase/glutamine amidotransferase protein
Position: -76
Score: 3.6
Sequence: TTTAGCGACATGGGTCAACTTT
Locus tag: Spro_2451
Name: dsdC
Funciton: DNA-binding transcriptional dual regulator
Spro_2451
dsdC
DNA-binding transcriptional dual regulator
Position: -123
Score: 3.7
Sequence: TAAATTGACGAGCATCATCTTT
Locus tag: Spro_2515
Name: dsdA
Funciton: D-serine dehydratase
Spro_2515
dsdA
D-serine dehydratase
Position: -180
Score: 4.8
Sequence: TTTTGTGATATCACTCAACTTT
Locus tag: Spro_4322
Name: exuT
Funciton: Hexuronate transporter
Spro_4322
exuT
Hexuronate transporter
Position: -99
Score: 3.9
Sequence: ATTAGTGACGTACATCGCAACC
Locus tag: Spro_2760
Name: fadD
Funciton: long-chain-fatty-acid--CoA ligase
Locus tag: Spro_2759
Name: rnd
Funciton: ribonuclease D
Spro_2760
fadD
long-chain-fatty-acid--CoA ligase
Spro_2759
rnd
ribonuclease D
Position: -126
Score: 4.2
Sequence: ATTCATGACATCTATCACATTC
Locus tag: Spro_4309
Name: fadH
Funciton: 2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase)
Spro_4309
fadH
2,4-dienoyl-CoA reductase [NADPH] (2,4-dienoyl coenzyme A reductase)
Position: -177
Score: 4
Sequence: AAGTGTGCGTGAGGTCAAAAAT
Locus tag: Spro_3230
Name: fruB
Funciton: PTS system, fructose-specific IIA/FPr component
Locus tag: Spro_3229
Name: fruK
Funciton: 1-phosphofructokinase
Locus tag: Spro_3228
Name: fruA
Funciton: PTS system, fructose-specific IIBC component
Spro_3230
fruB
PTS system, fructose-specific IIA/FPr component
Spro_3229
fruK
1-phosphofructokinase
Spro_3228
fruA
PTS system, fructose-specific IIBC component
Position: -100
Score: 4.7
Sequence: TTTTGCGATGTGCGTCAAATTA
Locus tag: Spro_1146
Name: fsr
Funciton: fosmidomycin resistance protein
Spro_1146
fsr
fosmidomycin resistance protein
Position: -117
Score: 4.9
Sequence: TTCTGTGATCTCATTCACGTTT
Locus tag: Spro_0407
Name: fxsA
Funciton: suppressor of F plamsid exlusion of phage T7
Spro_0407
fxsA
suppressor of F plamsid exlusion of phage T7
Position: -143
Score: 4
Sequence: TTTTTCGCTCTGGATCACCTTT
Locus tag: Spro_1292
Name: galT
Funciton: galactose-1-phosphate uridylyltransferase
Locus tag: Spro_1291
Name: galK
Funciton: galactokinase
Locus tag: Spro_1290
Name: galM
Funciton: aldose 1-epimerase
Spro_1292
galT
galactose-1-phosphate uridylyltransferase
Spro_1291
galK
galactokinase
Spro_1290
galM
aldose 1-epimerase
Position: -276
Score: 4.5
Sequence: TGGTGTGATATCGGTTACATTT
Position: -100
Score: 3.6
Sequence: TTGTGTAATCGTTTCCACTAAT
Position: -82
Score: 4.6
Sequence: TAATGTGATCGCACTCACTTAC
Locus tag: Spro_1160
Name: galP
Funciton: sugar transporter
Spro_1160
galP
sugar transporter
Position: -227
Score: 5.6
Sequence: ATATGTGATACCGATCACATAT
Locus tag: Spro_2728
Name: gapA
Funciton: glyceraldehyde-3-phosphate dehydrogenase
Locus tag: Spro_2729
Name: yeaD
Funciton: Aldose 1-epimerase
Spro_2728
gapA
glyceraldehyde-3-phosphate dehydrogenase
Spro_2729
yeaD
Aldose 1-epimerase
Position: -130
Score: 3.7
Sequence: AAACGTGGTTTTTTGCAAAAAT
Position: -21
Score: 4.6
Sequence: AAATTTGAAGGAGATCACAGAA
Locus tag: Spro_3600
Name: CKO_02295
Funciton: hypothetical protein
Spro_3600
CKO_02295
hypothetical protein
Position: -116
Score: 4.8
Sequence: TTTTGTGATCCGGATCGCTAAT
Locus tag: Spro_3407
Name: glk
Funciton: glucokinase
Spro_3407
glk
glucokinase
Position: -267
Score: 4
Sequence: GTATGTGATCCCTTTCACGGTG
Locus tag: Spro_4881
Name: glnA
Funciton: glutamine synthetase
Locus tag: Spro_4882
Name: glnL
Funciton: nitrogen regulation protein NR(II)
Locus tag: Spro_4883
Name: glnG
Funciton: nitrogen regulation protein NR(I)
Spro_4881
glnA
glutamine synthetase
Spro_4882
glnL
nitrogen regulation protein NR(II)
Spro_4883
glnG
nitrogen regulation protein NR(I)
Position: -231
Score: 3.6
Sequence: CGCTGTGATGGATGGCGCAATT
Position: -138
Score: 4.9
Sequence: AATCGTGATTATGATCACATTC
Locus tag: Spro_0200
Name: glpA
Funciton: sn-glycerol-3-phosphate dehydrogenase subunit A
Locus tag: Spro_0201
Name: glpB
Funciton: Glycerol-3-phosphate dehydrogenase subunit B
Locus tag: Spro_0202
Name: glpC
Funciton: anaerobic glycerol-3-phosphate dehydrogenase subunit C
Spro_0200
glpA
sn-glycerol-3-phosphate dehydrogenase subunit A
Spro_0201
glpB
Glycerol-3-phosphate dehydrogenase subunit B
Spro_0202
glpC
anaerobic glycerol-3-phosphate dehydrogenase subunit C
Position: -129
Score: 3.6
Sequence: AACTGTTACCTCTATCACGCCT
Locus tag: Spro_4642
Name: glpD
Funciton: glycerol-3-phosphate dehydrogenase
Spro_4642
glpD
glycerol-3-phosphate dehydrogenase
Position: -183
Score: 4.1
Sequence: TTTTATGACGAAGCACACACAT
Locus tag: Spro_4797
Name: glpF
Funciton: facilitator for glycerol uptake
Locus tag: Spro_4798
Name: glpK
Funciton: glycerol kinase
Locus tag: Spro_4799
Name: glpX
Funciton: fructose 1,6-bisphosphatase II
Spro_4797
glpF
facilitator for glycerol uptake
Spro_4798
glpK
glycerol kinase
Spro_4799
glpX
fructose 1,6-bisphosphatase II
Position: -249
Score: 4.5
Sequence: GAATGTGATCATAATCACGATT
Locus tag: Spro_0199
Name: glpT
Funciton: glycerol-3-phosphate transporter
Locus tag: Spro_0198
Name: glpQ
Funciton: glycerophosphoryl diester phosphodiesterase
Spro_0199
glpT
glycerol-3-phosphate transporter
Spro_0198
glpQ
glycerophosphoryl diester phosphodiesterase
Position: -208
Score: 4
Sequence: TTTAATGATTTGACCCACAAAA
Locus tag: Spro_4872
Name: gltS
Funciton: sodium/glutamate symporter
Spro_4872
gltS
sodium/glutamate symporter
Position: -297
Score: 3.7
Sequence: ATGCTTGAAGTGGCTCTCACTT
Position: -72
Score: 4.2
Sequence: ACATGTGTGCCACATCACAAAA
Locus tag: Spro_1608
Name: gnd
Funciton: 6-phosphogluconate dehydrogenase, decarboxylating
Spro_1608
gnd
6-phosphogluconate dehydrogenase, decarboxylating
Position: -144
Score: 4.3
Sequence: AAACTTGAAGCCGATCACAGAT
Locus tag: Spro_4497
Name: gntK
Funciton: gluconate kinase 1
Locus tag: Spro_4498
Name: gntU
Funciton: Low-affinity gluconate transporter (Gluconate permease)
Spro_4497
gntK
gluconate kinase 1
Spro_4498
gntU
Low-affinity gluconate transporter (Gluconate permease)
Position: -223
Score: 4.2
Sequence: AAACGTGATCAATCTAACACCT
Locus tag: Spro_0178
Name: hemC
Funciton: porphobilinogen deaminase
Locus tag: Spro_0177
Name: hemD
Funciton: uroporphyrinogen-III synthase
Locus tag: Spro_0176
Name: hemX
Funciton: uroporphyrinogen III methylase
Locus tag: Spro_0175
Name: hemY
Funciton: HemY protein
Spro_0178
hemC
porphobilinogen deaminase
Spro_0177
hemD
uroporphyrinogen-III synthase
Spro_0176
hemX
uroporphyrinogen III methylase
Spro_0175
hemY
HemY protein
Position: -290
Score: 3.8
Sequence: TCGCGTGATTTAACCCACAGAA
Position: -260
Score: 4.3
Sequence: AATATTGATATAAAACACAATT
Locus tag: Spro_2706
Name: hns
Funciton: global DNA-binding transcriptional dual regulator H-NS
Spro_2706
hns
global DNA-binding transcriptional dual regulator H-NS
Position: -123
Score: 5
Sequence: TTTTGTTATCACGATCACAAAT
Locus tag: Spro_0625
Name: hpaG
Funciton: 4-hydroxyphenylacetate catabolism
Locus tag: Spro_0626
Name: hpaG
Funciton: 4-hydroxyphenylacetate catabolism
Locus tag: Spro_0627
Name: hpaE
Funciton: 4-hydroxyphenylacetate catabolism
Locus tag: Spro_0628
Name: hpaD
Funciton: 4-hydroxyphenylacetate catabolism
Locus tag: Spro_0629
Name: hpaF
Funciton: 4-hydroxyphenylacetate catabolism
Spro_0625
hpaG
4-hydroxyphenylacetate catabolism
Spro_0626
hpaG
4-hydroxyphenylacetate catabolism
Spro_0627
hpaE
4-hydroxyphenylacetate catabolism
Spro_0628
hpaD
4-hydroxyphenylacetate catabolism
Spro_0629
hpaF
4-hydroxyphenylacetate catabolism
Position: -224
Score: 5.2
Sequence: ATTTGTGATCGTGATAACAAAA
Locus tag: Spro_0624
Name: hpaR
Funciton: 4-hydroxyphenylacetate catabolism
Spro_0624
hpaR
4-hydroxyphenylacetate catabolism
Position: -196
Score: 4.8
Sequence: TATTGTGATTTGACGCGCAAAA
Locus tag: Spro_0805
Name: hutU
Funciton: urocanate hydratase
Locus tag: Spro_0804
Name: hutH
Funciton: histidine ammonia-lyase
Spro_0805
hutU
urocanate hydratase
Spro_0804
hutH
histidine ammonia-lyase
Position: -130
Score: 3.7
Sequence: AAACGTGGTTTTTTGCAAAAAT
Position: -21
Score: 4.6
Sequence: AAATTTGAAGGAGATCACAGAA
Locus tag: Spro_3600
Name: CKO_02295
Funciton: hypothetical protein
Spro_3600
CKO_02295
hypothetical protein
Position: -55
Score: 3.6
Sequence: TTGTGTAATACTTGTAACGCTA
Locus tag: Spro_2186
Name: lpp
Funciton: major outer membrane lipoprotein
Spro_2186
lpp
major outer membrane lipoprotein
Position: -209
Score: 3.6
Sequence: CTTTGTTATCAAACTCACTATC
Position: -90
Score: 4.1
Sequence: GTTTGTGACGTTTCTCTCACTA
Locus tag: Spro_3472
Name: maeB
Funciton: malic enzyme
Spro_3472
maeB
malic enzyme
Position: -199
Score: 4
Sequence: ATCTGTGATCTGCCTGGCAAAA
Position: -165
Score: 3.6
Sequence: TTTTGTGTCTGACGCCACAGAA
Position: -136
Score: 4.4
Sequence: CAATGTTAACTGGATCACACTA
Locus tag: Spro_4472
Name: malE
Funciton: maltose ABC transporter periplasmic protein
Locus tag: Spro_4473
Name: malF
Funciton: ABC superfamily (membrane), maltose transport protein
Locus tag: Spro_4474
Name: malG
Funciton: ABC superfamily (membrane), maltose transport protein
Spro_4472
malE
maltose ABC transporter periplasmic protein
Spro_4473
malF
ABC superfamily (membrane), maltose transport protein
Spro_4474
malG
ABC superfamily (membrane), maltose transport protein
Position: -139
Score: 4.4
Sequence: AAAAGTGCCTGAGATCACAATT
Locus tag: Spro_4636
Name: malP
Funciton: maltodextrin phosphorylase
Locus tag: Spro_4635
Name: malQ
Funciton: 4-alpha-glucanotransferase
Spro_4636
malP
maltodextrin phosphorylase
Spro_4635
malQ
4-alpha-glucanotransferase
Position: -163
Score: 4
Sequence: CATTGTAATATAGATTAAAAAA
Locus tag: Spro_0054
Name: malS
Funciton: periplasmic alpha-amylase precursor
Spro_0054
malS
periplasmic alpha-amylase precursor
Position: -203
Score: 4
Sequence: AAGTGTGATCAATAGCAATATA
Locus tag: Spro_4637
Name: malT
Funciton: transcriptional regulator MalT
Spro_4637
malT
transcriptional regulator MalT
Position: -229
Score: 4.4
Sequence: ATCTGTGAGAAAATTCACAGAT
Locus tag: Spro_1563
Name: mglB
Funciton: Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)
Locus tag: Spro_1564
Name: mglA
Funciton: Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17)
Locus tag: Spro_1565
Name: mglC
Funciton: Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3)
Spro_1563
mglB
Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)
Spro_1564
mglA
Galactose/methyl galactoside ABC transport system, ATP-binding protein MglA (EC 3.6.3.17)
Spro_1565
mglC
Galactose/methyl galactoside ABC transport system, permease protein MglC (TC 3.A.1.2.3)
Position: -136
Score: 4.1
Sequence: TTCTGTGCTGCCCGTCACGTTT
Locus tag: Spro_3399
Name: mltB
Funciton: membrane-bound lytic murein transglycosylase B
Spro_3399
mltB
membrane-bound lytic murein transglycosylase B
Position: -194
Score: 5.3
Sequence: TTTTGTGATTTACATCACCAAA
Locus tag: Spro_1227
Name: nagB
Funciton: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Locus tag: Spro_1226
Name: nagA
Funciton: N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Locus tag: Spro_1225
Name: nagC
Funciton: N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
Locus tag: Spro_1224
Name: nagD
Funciton: Phosphatase NagD predicted to act in N-acetylglucosamine utilization subsystem
Spro_1227
nagB
Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Spro_1226
nagA
N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)
Spro_1225
nagC
N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family
Spro_1224
nagD
Phosphatase NagD predicted to act in N-acetylglucosamine utilization subsystem
Position: -162
Score: 5.1
Sequence: TTTGGTGATGTAAATCACAAAA
Position: -44
Score: 3.9
Sequence: AAATATGATAAAGCTCATTAAA
Locus tag: Spro_1228
Name: nagE
Funciton: PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Spro_1228
nagE
PTS system, N-acetylglucosamine-specific IIA component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIB component (EC 2.7.1.69) / PTS system, N-acetylglucosamine-specific IIC component (EC 2.7.1.69)
Position: -153
Score: 4.3
Sequence: AAGTTTGATGTACATCAATTTT
Locus tag: Spro_1926
Name: ndh
Funciton: NADH dehydrogenase (EC 1.6.99.3)
Spro_1926
ndh
NADH dehydrogenase (EC 1.6.99.3)
Position: -120
Score: 4.7
Sequence: AAGTGTGATATAAATCGCTTAT
Locus tag: Spro_0694
Name: nhaA
Funciton: Na+/H+ antiporter NhaA type
Spro_0694
nhaA
Na+/H+ antiporter NhaA type
Position: -135
Score: 4.4
Sequence: CAATGTGATCAAGATCGGATTT
Locus tag: Spro_4612
Name: nudE
Funciton: ADP compounds hydrolase NudE (EC 3.6.1.-)
Spro_4612
nudE
ADP compounds hydrolase NudE (EC 3.6.1.-)
Position: -84
Score: 3.6
Sequence: ATTTGCAATAGACCTCTCGTTT
Locus tag: Spro_3416
Name: nupC
Funciton: Nucleoside permease NupC
Spro_3416
nupC
Nucleoside permease NupC
Position: -181
Score: 3.9
Sequence: AACCGTGACGCATGTCACGTAC
Locus tag: Spro_0659
Name: nupC2
Funciton: Na+ dependent nucleoside transporter
Spro_0659
nupC2
Na+ dependent nucleoside transporter
Position: -195
Score: 3.8
Sequence: TTTTTAGAGCTTTATCACATCA
Locus tag: Spro_1754
Name: ompA
Funciton: outer membrane protein A
Spro_1754
ompA
outer membrane protein A
Position: -135
Score: 3.8
Sequence: TTTTTTGATTCAGATCAATCCT
Locus tag: Spro_2674
Name: ompW
Funciton: outer membrane protein W
Spro_2674
ompW
outer membrane protein W
Position: -80
Score: 4.1
Sequence: ATATTTGATACCTATCGCGGTT
Locus tag: Spro_4617
Name: pck
Funciton: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Spro_4617
pck
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Position: -188
Score: 4.1
Sequence: CGTCGTGAAGAAGATCACACAT
Locus tag: Spro_2009
Name: pepT
Funciton: peptidase T
Spro_2009
pepT
peptidase T
Position: -80
Score: 3.7
Sequence: AAAAGAGATCATAATCACAGTC
Locus tag: Spro_4477
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Spro_4477
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -88
Score: 3.8
Sequence: TTGTAAGAATTGAATCACAATA
Position: -53
Score: 4.2
Sequence: TCTTGTGCCAGAGGTCACATTT
Locus tag: Spro_0196
Name: pldB
Funciton: Lysophospholipase L2 (EC 3.1.1.5)
Locus tag: Spro_0197
Name: yigL
Funciton: Hydrolase (HAD superfamily)
Spro_0196
pldB
Lysophospholipase L2 (EC 3.1.1.5)
Spro_0197
yigL
Hydrolase (HAD superfamily)
Position: -181
Score: 3.9
Sequence: ATGCGTGATGCAGTTGGCAAAA
Locus tag: Spro_4589
Name: ppiA
Funciton: Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
Spro_4589
ppiA
Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
Position: -88
Score: 4.7
Sequence: TGATTTGATTTCGATCAAATAT
Locus tag: Spro_2640
Name: fsaB
Funciton: fructose 6-phosphate aldolase 2
Spro_2640
fsaB
fructose 6-phosphate aldolase 2
Position: -164
Score: 4.4
Sequence: AAACGTGACTGTCATCAAACAT
Locus tag: Spro_1914
Name: ptsG
Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Spro_1914
ptsG
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Position: -149
Score: 3.6
Sequence: TTTTTTGATCTGAAGTGCCAAA
Locus tag: Spro_3448
Name: ptsH
Funciton: PTS system phosphocarrier protein
Locus tag: Spro_3449
Name: ptsI
Funciton: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
Locus tag: Spro_3450
Name: crr
Funciton: PTS system, glucose-specific IIA component (EC 2.7.1.69)
Spro_3448
ptsH
PTS system phosphocarrier protein
Spro_3449
ptsI
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
Spro_3450
crr
PTS system, glucose-specific IIA component (EC 2.7.1.69)
Position: -211
Score: 3.9
Sequence: AAATGTGACGCAGGGTAAACTT
Locus tag: Spro_2930
Name: putP
Funciton: Proline/sodium symporter PutP (TC 2.A.21.2.1)
Spro_2930
putP
Proline/sodium symporter PutP (TC 2.A.21.2.1)
Position: -170
Score: 3.7
Sequence: CTTCGTGATCGGGATCTCTTTC
Position: -67
Score: 3.8
Sequence: TTTTGTGCTGTTTTTCCGAATT
Locus tag: Spro_4382
Name: rnk
Funciton: Regulator of nucleoside diphosphate kinase
Spro_4382
rnk
Regulator of nucleoside diphosphate kinase
Position: -253
Score: 4.3
Sequence: ATCCGTGATCTAAATCACTGTT
Locus tag: Spro_1263
Name: sdhC
Funciton: Succinate dehydrogenase cytochrome b-556 subunit
Locus tag: Spro_1264
Name: sdhD
Funciton: Succinate dehydrogenase hydrophobic membrane anchor protein
Locus tag: Spro_1265
Name: sdhA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Spro_1266
Name: sdhB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Spro_1263
sdhC
Succinate dehydrogenase cytochrome b-556 subunit
Spro_1264
sdhD
Succinate dehydrogenase hydrophobic membrane anchor protein
Spro_1265
sdhA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Spro_1266
sdhB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -215
Score: 4.4
Sequence: TTTGGTGACATATGTCACATTG
Locus tag: Spro_3923
Name: serA
Funciton: D-3-phosphoglycerate dehydrogenase
Spro_3923
serA
D-3-phosphoglycerate dehydrogenase
Position: -139
Score: 4.1
Sequence: TTCGGTGATTTCGATCACACTC
Position: -98
Score: 4.7
Sequence: TTTTGTGATTAACATCGCAATC
Locus tag: Spro_2083
Name: scrT
Funciton: Sucrose permease, major facilitator superfamily
Spro_2083
scrT
Sucrose permease, major facilitator superfamily
Position: -110
Score: 4.9
Sequence: AATTGTGATCTATTTAAAACAA
Locus tag: Spro_3569
Name: srlA
Funciton: PTS system, glucitol/sorbitol-specific IIC component (EC 2.7.1.69)
Locus tag: Spro_3570
Name: srlE
Funciton: PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components (EC 2.7.1.69)
Locus tag: Spro_3571
Name: srlB
Funciton: PTS system, glucitol/sorbitol-specific IIA component (EC 2.7.1.69)
Locus tag: Spro_3572
Name: srlD
Funciton: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
Locus tag: Spro_3573
Name: srlM
Funciton: DNA-binding transcriptional activator of glucitol operon
Locus tag: Spro_3574
Name: srlR
Funciton: Transcriptional repressor for glucitol operon, DeoR family
Locus tag: Spro_3575
Name: srlQ
Funciton: Glucitol operon SrlQ protein
Spro_3569
srlA
PTS system, glucitol/sorbitol-specific IIC component (EC 2.7.1.69)
Spro_3570
srlE
PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components (EC 2.7.1.69)
Spro_3571
srlB
PTS system, glucitol/sorbitol-specific IIA component (EC 2.7.1.69)
Spro_3572
srlD
Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
Spro_3573
srlM
DNA-binding transcriptional activator of glucitol operon
Spro_3574
srlR
Transcriptional repressor for glucitol operon, DeoR family
Spro_3575
srlQ
Glucitol operon SrlQ protein
Position: -139
Score: 4.1
Sequence: TTTTGCAAGCTGGCTCACAGTT
Locus tag: Spro_4014
Name: araT
Funciton: putative permease of the Na+:galactoside symporter family
Locus tag: Spro_4015
Name: abfA
Funciton: Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)
Spro_4014
araT
putative permease of the Na+:galactoside symporter family
Spro_4015
abfA
Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55)
Position: -271
Score: 4.1
Sequence: AATTGAGACTTTTCTCAGATTT
Locus tag: Spro_0688
Name: talB
Funciton: transaldolase B
Spro_0688
talB
transaldolase B
Position: -203
Score: 4.3
Sequence: AAATGTGATGTCAGACAGAAAT
Locus tag: Spro_2705
Name: tdk
Funciton: Thymidine kinase (EC 2.7.1.21)
Spro_2705
tdk
Thymidine kinase (EC 2.7.1.21)
Position: -54
Score: 3.6
Sequence: TGCCGTGATATTCCGCACACTG
Locus tag: Spro_1111
Name: tesB
Funciton: Acyl-CoA thioesterase II (EC 3.1.2.-)
Spro_1111
tesB
Acyl-CoA thioesterase II (EC 3.1.2.-)
Position: -124
Score: 3.8
Sequence: TTTTGTGATCCTCGCCCCAAAC
Locus tag: Spro_0529
Name: treB
Funciton: PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
Locus tag: Spro_0528
Name: treC
Funciton: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
Spro_0529
treB
PTS system, trehalose-specific IIB component (EC 2.7.1.69) / PTS system, trehalose-specific IIC component (EC 2.7.1.69)
Spro_0528
treC
Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
Position: -143
Score: 5.3
Sequence: TTTTGTGACTTTAATCACAAAA
Position: -125
Score: 3.7
Sequence: AAAAGTTATGTAGATTGCATTC
Position: -91
Score: 4.1
Sequence: CATAGTGATGGTTGTCACGAAA
Locus tag: Spro_0244
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
Spro_0244
udp
Uridine phosphorylase (EC 2.4.2.3)
Position: -103
Score: 4.6
Sequence: TAATTTGACGCACATCGCAAAA
Locus tag: Spro_1147
Name: ushA
Funciton: UDP-sugar hydrolase (EC 3.6.1.45); 5'-nucleotidase (EC 3.1.3.5)
Spro_1147
ushA
UDP-sugar hydrolase (EC 3.6.1.45); 5'-nucleotidase (EC 3.1.3.5)
Position: -123
Score: 4
Sequence: CAGTGTGATCGCCTCAACATAT
Locus tag: Spro_4691
Name: uspA3
Funciton: Universal stress protein A
Spro_4691
uspA3
Universal stress protein A
Position: -231
Score: 4.1
Sequence: AAAGTTGAGTGATATCACAAAA
Locus tag: Spro_4321
Name: uxaC
Funciton: Uronate isomerase (EC 5.3.1.12)
Locus tag: Spro_4320
Name: uxaA
Funciton: Altronate hydrolase (EC 4.2.1.7)
Spro_4321
uxaC
Uronate isomerase (EC 5.3.1.12)
Spro_4320
uxaA
Altronate hydrolase (EC 4.2.1.7)
Position: -167
Score: 3.9
Sequence: AACCGTGAAGTGGATCAACCAA
Position: -48
Score: 4.1
Sequence: AATCTTGATCACCACCACAATA
Locus tag: Spro_3238
Name: uxuA
Funciton: Mannonate dehydratase (EC 4.2.1.8)
Spro_3238
uxuA
Mannonate dehydratase (EC 4.2.1.8)
Position: -222
Score: 3.9
Sequence: TTTTATGATGGCGGTCATGCTT
Position: -129
Score: 4.6
Sequence: TTATGAGATCTGTCGCACATTT
Locus tag: Spro_0098
Name: xylA
Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: Spro_0097
Name: xylB
Funciton: Xylulose kinase (EC 2.7.1.17)
Spro_0098
xylA
Xylose isomerase (EC 5.3.1.5)
Spro_0097
xylB
Xylulose kinase (EC 2.7.1.17)
Position: -259
Score: 4.4
Sequence: AAATGTGCGACAGATCTCATAA
Position: -166
Score: 3.7
Sequence: AAGCATGACCGCCATCATAAAA
Locus tag: Spro_0099
Name: xylF
Funciton: Xylose ABC transporter, periplasmic xylose-binding protein XylF
Locus tag: Spro_0100
Name: xylG
Funciton: D-xylose transport ATP-binding protein XylG
Locus tag: Spro_0101
Name: xylH
Funciton: Xylose ABC transporter, permease protein XylH
Locus tag: Spro_0102
Name: xylR
Funciton: Xylose activator XylR (AraC family)
Spro_0099
xylF
Xylose ABC transporter, periplasmic xylose-binding protein XylF
Spro_0100
xylG
D-xylose transport ATP-binding protein XylG
Spro_0101
xylH
Xylose ABC transporter, permease protein XylH
Spro_0102
xylR
Xylose activator XylR (AraC family)
Position: -136
Score: 4.2
Sequence: TTTTTTTATACACAACACATAT
Locus tag: Spro_0952
Name: yafK
Funciton: hypothetical protein
Spro_0952
yafK
hypothetical protein
Position: -146
Score: 4.6
Sequence: TTAAGTGACGCAGAGCACAATA
Locus tag: Spro_1330
Name: ybiH
Funciton: putative transcriptional regulator
Locus tag: Spro_1329
Name: ybhG
Funciton: hypothetical protein
Locus tag: Spro_1328
Name: ybhF
Funciton: ABC transporter-related protein
Locus tag: Spro_1327
Name: ybhS
Funciton: ABC-2 type transporter
Locus tag: Spro_1326
Name: ybhR
Funciton: ABC-2 type transporter
Spro_1330
ybiH
putative transcriptional regulator
Spro_1329
ybhG
hypothetical protein
Spro_1328
ybhF
ABC transporter-related protein
Spro_1327
ybhS
ABC-2 type transporter
Spro_1326
ybhR
ABC-2 type transporter
Position: -125
Score: 4.2
Sequence: TTTTGTGACAAATTCCACATCT
Position: -96
Score: 3.6
Sequence: TATCTTGTTTCTCATTACATAT
Position: -73
Score: 4.6
Sequence: TTATGTGAAATACATCACATGA
Locus tag: Spro_3290
Name: ycdZ
Funciton: hypothetical protein
Spro_3290
ycdZ
hypothetical protein
Position: -116
Score: 3.7
Sequence: TTATTTGATAAAGATTATCAAA
Locus tag: Spro_4435
Name: ycfR
Funciton: hypothetical protein
Spro_4435
ycfR
hypothetical protein
Position: -268
Score: 5.2
Sequence: TTTTGTGATTTAAATCATAAAA
Locus tag: Spro_2703
Name: ychE
Funciton: putative channel protein
Spro_2703
ychE
putative channel protein
Position: -117
Score: 4.2
Sequence: ATTTGTGATCGCCTACGCAATC
Locus tag: Spro_1985
Name: ychH
Funciton: membrane protein
Spro_1985
ychH
membrane protein
Position: -38
Score: 3.8
Sequence: TTATTTGCTATGCATTAAAATT
Locus tag: Spro_3695
Name: ydcL
Funciton: hypothetical protein
Spro_3695
ydcL
hypothetical protein
Position: -143
Score: 5.7
Sequence: ATATGTGATCGGTATCACATAT
Locus tag: Spro_2727
Name: msrB
Funciton: methionine sulfoxide reductase B
Locus tag: Spro_2726
Name: b1777
Funciton: conserved hypothetical protein
Spro_2727
msrB
methionine sulfoxide reductase B
Spro_2726
b1777
conserved hypothetical protein
Position: -214
Score: 4.2
Sequence: AAATGCGAGCTGAGTCGCAAAA
Position: -121
Score: 4.1
Sequence: GCTTGTGATGTTTTTTACATTT
Locus tag: Spro_3250
Name: yejG
Funciton: hypothetical protein
Spro_3250
yejG
hypothetical protein
Position: -249
Score: 4.7
Sequence: ATTAGCGATCCGGATCACAAAA
Locus tag: Spro_3408
Name: yfeO
Funciton: Chloride channel protein
Spro_3408
yfeO
Chloride channel protein
Position: -33
Score: 3.6
Sequence: TTGATTTATTTAATTCATATAT
Locus tag: Spro_3441
Name: yfeR
Funciton: transcriptional regulator, LysR family
Spro_3441
yfeR
transcriptional regulator, LysR family
Position: -83
Score: 4.8
Sequence: ATACGTGATTTTCATCACGCAT
Locus tag: Spro_0882
Name: raiA
Funciton: stationary phase translation inhibitor and ribosome stability factor
Spro_0882
raiA
stationary phase translation inhibitor and ribosome stability factor
Position: -140
Score: 3.8
Sequence: AAAATTGACTTTAATCAAAGAA
Locus tag: Spro_3682
Name: grcA
Funciton: Autonomous glycyl radical cofactor
Spro_3682
grcA
Autonomous glycyl radical cofactor
Position: -211
Score: 3.9
Sequence: ATCAGCGATCGTTGTCACAATT
Locus tag: Spro_1493
Name: ygbI
Funciton: Hypothetical transcriptional regulator ygbI
Spro_1493
ygbI
Hypothetical transcriptional regulator ygbI
Position: -92
Score: 4.1
Sequence: AATTGTGACAACGATCGCTGAT
Locus tag: Spro_1492
Name: ygbJ
Funciton: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
Locus tag: Spro_1491
Name: ygbK
Funciton: hypothetical protein
Spro_1492
ygbJ
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
Spro_1491
ygbK
hypothetical protein
Position: -72
Score: 3.7
Sequence: ATGTGTGATGTAGATTAGTGTT
Locus tag: Spro_4341
Name: elbB
Funciton: sigma cross-reacting protein 27A (SCRP-27A)
Locus tag: Spro_4340
Name: mtgA
Funciton: monofunctional biosynthetic peptidoglycan transglycosylase
Spro_4341
elbB
sigma cross-reacting protein 27A (SCRP-27A)
Spro_4340
mtgA
monofunctional biosynthetic peptidoglycan transglycosylase
Position: -293
Score: 5.1
Sequence: AAAAGTGATTTAGATCACAGAT
Position: -89
Score: 3.8
Sequence: ATTTGTGGTGCGTGTCAGCTAA
Locus tag: Spro_4392
Name: yhcR
Funciton: hypothetical protein
Locus tag: Spro_4391
Name: aaeA
Funciton: p-hydroxybenzoic acid efflux system component
Locus tag: Spro_4390
Name: aaeB
Funciton: p-hydroxybenzoic acid efflux system component
Spro_4392
yhcR
hypothetical protein
Spro_4391
aaeA
p-hydroxybenzoic acid efflux system component
Spro_4390
aaeB
p-hydroxybenzoic acid efflux system component
Position: -82
Score: 4.3
Sequence: AATTGTGAACCCGATCACTTCA
Locus tag: Spro_2681
Name: yhfC
Funciton: Predicted purine nucleoside transporter, MFS superfamily
Spro_2681
yhfC
Predicted purine nucleoside transporter, MFS superfamily
Position: -182
Score: 4.8
Sequence: AAACGTGTTGTCGATCACAAAT
Locus tag: Spro_3933
Name: yiaK
Funciton: 3-dehydro-L-gulonate 2-dehydrogenase (EC 1.1.1.130)
Locus tag: Spro_3934
Name: Spro_3934
Funciton: hypothetical protein
Locus tag: Spro_3935
Name: yiaO
Funciton: 2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor
Locus tag: Spro_3936
Name: lyxK
Funciton: L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-)
Locus tag: Spro_3937
Name: sgbH
Funciton: 3-keto-L-gulonate 6-phosphate decarboxylase
Locus tag: Spro_3938
Name: sgbU
Funciton: putative 3-hexulose-6-phosphate isomerase
Locus tag: Spro_3939
Name: sgbE
Funciton: L-ribulose-5-phosphate 4-epimerase
Spro_3933
yiaK
3-dehydro-L-gulonate 2-dehydrogenase (EC 1.1.1.130)
Spro_3934
Spro_3934
hypothetical protein
Spro_3935
yiaO
2,3-diketo-L-gulonate-binding periplasmic protein yiaO precursor
Spro_3936
lyxK
L-xylulose/3-keto-L-gulonate kinase (EC 2.7.1.-)
Spro_3937
sgbH
3-keto-L-gulonate 6-phosphate decarboxylase
Spro_3938
sgbU
putative 3-hexulose-6-phosphate isomerase
Spro_3939
sgbE
L-ribulose-5-phosphate 4-epimerase
Position: -81
Score: 5
Sequence: CAATGTGACGCAGATCACACTA
Locus tag: Spro_2355
Name: yjcB
Funciton: hypothetical protein
Spro_2355
yjcB
hypothetical protein
Position: -60
Score: 3.8
Sequence: TAATGCTATTAAGCTCAAGTTT
Locus tag: Spro_0444
Name: yjfP
Funciton: putative hydrolase
Spro_0444
yjfP
putative hydrolase
Position: -111
Score: 4.8
Sequence: ATTTGTGCAGCAAATCACATAA
Locus tag: Spro_2283
Name: mlc
Funciton: ROK family transcriptional regulatory protein
Spro_2283
mlc
ROK family transcriptional regulatory protein
Position: -62
Score: 4.3
Sequence: ATTTGTGGCGGAGGTCACAGTT
Locus tag: Spro_1570
Name: yohJ
Funciton: LrgA family protein
Locus tag: Spro_1569
Name: yohK
Funciton: LrgB family protein
Spro_1570
yohJ
LrgA family protein
Spro_1569
yohK
LrgB family protein
Position: -163
Score: 4.3
Sequence: TGATGTGATGCCGCTCATTATT
Locus tag: Spro_4768
Name: ytfQ
Funciton: Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor
Locus tag: Spro_4767
Name: ytfR
Funciton: Putative sugar ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17)
Locus tag: Spro_4766
Name: ytfT
Funciton: Putative sugar ABC transport system, permease protein YtfT
Locus tag: Spro_4765
Name: yjfF
Funciton: Putative sugar ABC transport system, permease protein YjfF
Spro_4768
ytfQ
Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor
Spro_4767
ytfR
Putative sugar ABC transport system, ATP-binding protein YtfR (EC 3.6.3.17)
Spro_4766
ytfT
Putative sugar ABC transport system, permease protein YtfT
Spro_4765
yjfF
Putative sugar ABC transport system, permease protein YjfF
Position: -132
Score: 3.1
Sequence: AAATGTGCGGGTAACCTGATTT
Position: -56
Score: 3.4
Sequence: TTTTGAAATTGGTATTACCAAT
Locus tag: Spro_4012
Name: pdhR
Funciton: Transcriptional repressor for pyruvate dehydrogenase complex
Locus tag: Spro_4011
Name: aceE
Funciton: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Locus tag: Spro_4010
Name: aceF
Funciton: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Spro_4012
pdhR
Transcriptional repressor for pyruvate dehydrogenase complex
Spro_4011
aceE
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Spro_4010
aceF
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Position: -135
Score: 3.4
Sequence: AATTGAGATCTGGCGCAGGTAG
Position: -84
Score: 3.5
Sequence: TCCTGTGACGGGATTCACGCAG
Locus tag: Spro_1562
Name: galS
Funciton: Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator
Spro_1562
galS
Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator
Position: -134
Score: 3.8
Sequence: ACCTGTGAGTAACATCGCAAAA
Position: -63
Score: 3.8
Sequence: TTAGTTAACGTGATTCACATTT
Locus tag: Spro_3072
Name: paaA
Funciton: predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
Locus tag: Spro_3073
Name: paaB
Funciton: predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
Locus tag: Spro_3074
Name: paaC
Funciton: predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
Locus tag: Spro_3075
Name: paaD
Funciton: predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
Locus tag: Spro_3076
Name: paaE
Funciton: predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
Locus tag: Spro_3077
Name: paaF
Funciton: enoyl-CoA hydratase-isomerase
Locus tag: Spro_3078
Name: paaG
Funciton: phenylacetate degradation probable enoyl-CoA hydratase paaB
Locus tag: Spro_3079
Name: paaH
Funciton: 3-hydroxybutyryl-CoA dehydrogenase
Locus tag: Spro_3080
Name: paaI
Funciton: predicted thioesterase
Locus tag: Spro_3081
Name: paaJ
Funciton: acetyl-CoA acetyltransferase
Locus tag: Spro_3082
Name: paaK
Funciton: phenylacetyl-CoA ligase
Spro_3072
paaA
predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
Spro_3073
paaB
predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
Spro_3074
paaC
predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
Spro_3075
paaD
predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
Spro_3076
paaE
predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
Spro_3077
paaF
enoyl-CoA hydratase-isomerase
Spro_3078
paaG
phenylacetate degradation probable enoyl-CoA hydratase paaB
Spro_3079
paaH
3-hydroxybutyryl-CoA dehydrogenase
Spro_3080
paaI
predicted thioesterase
Spro_3081
paaJ
acetyl-CoA acetyltransferase
Spro_3082
paaK
phenylacetyl-CoA ligase
Position: -104
Score: 3.5
Sequence: TTTTGCAGCACAGTTCACAAAT
Locus tag: Spro_1382
Name: ydeV
Funciton: putative kinase
Spro_1382
ydeV
putative kinase
Position: -246
Score: 3.6
Sequence: TATGGTGATGTAATGAAAAAAG
Locus tag: Spro_4009
Name: lpdA
Funciton: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Spro_4009
lpdA
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Position: -192
Score: 3.9
Sequence: TTATGTGAACGAATTAACAACC
Locus tag: Spro_4008
Name: acnB
Funciton: Aconitate hydratase 2 (EC 4.2.1.3)
Spro_4008
acnB
Aconitate hydratase 2 (EC 4.2.1.3)
Position: -76
Score: 3.4
Sequence: TTTTGTGTCCCATGTCGCAACG
Locus tag: Spro_2411
Name: prpR
Funciton: Propionate catabolism operon regulatory protein PrpR
Spro_2411
prpR
Propionate catabolism operon regulatory protein PrpR
Position: -188
Score: 4.1
Sequence: AATAGTGATGTATCGCAAAAAC
Locus tag: Spro_1098
Name: hupB
Funciton: HU, DNA-binding transcriptional regulator, beta subunit
Spro_1098
hupB
HU, DNA-binding transcriptional regulator, beta subunit
Position: -277
Score: 3.8
Sequence: AAATGTGAATCACGTTAACTAA
Position: -206
Score: 4
Sequence: TTTTGCGATGTTACTCACAGGT
Locus tag: Spro_3071
Name: paaN
Funciton: Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase (EC 1.2.1.3)
Spro_3071
paaN
Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase (EC 1.2.1.3)
Position: -167
Score: 4
Sequence: TATTGTGAATAAAAATACAATA
Locus tag: Spro_4781
Name: argC
Funciton: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Locus tag: Spro_4780
Name: argB
Funciton: Acetylglutamate kinase (EC 2.7.2.8)
Locus tag: Spro_4779
Name: argG
Funciton: Argininosuccinate synthase (EC 6.3.4.5)
Locus tag: Spro_4778
Name: argH
Funciton: Argininosuccinate lyase (EC 4.3.2.1)
Spro_4781
argC
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Spro_4780
argB
Acetylglutamate kinase (EC 2.7.2.8)
Spro_4779
argG
Argininosuccinate synthase (EC 6.3.4.5)
Spro_4778
argH
Argininosuccinate lyase (EC 4.3.2.1)
Position: -115
Score: 4
Sequence: AGGTGTTAGATTGATCACGTTT
Locus tag: Spro_0179
Name: cyaA
Funciton: Adenylate cyclase (EC 4.6.1.1)
Spro_0179
cyaA
Adenylate cyclase (EC 4.6.1.1)
Position: -280
Score: 3.3
Sequence: GGTTTTGAGGCGTGTCATAAAT
Locus tag: Spro_4579
Name: yhfA
Funciton: hypothetical protein
Spro_4579
yhfA
hypothetical protein
Position: -225
Score: 3.5
Sequence: CGTTGCGACATGGGACACAAAA
Locus tag: Spro_2410
Name: aldB
Funciton: Aldehyde dehydrogenase B (EC 1.2.1.22)
Spro_2410
aldB
Aldehyde dehydrogenase B (EC 1.2.1.22)
Position: -243
Score: 4.2
Sequence: AAGTTTGATCTCTATCCCAGAA
Position: -173
Score: 3.8
Sequence: TATCATGATACCGGTAACAATG
Position: -147
Score: 3.7
Sequence: TGCGGTGATATTGATCGCGATA
Locus tag: Spro_4651
Name: gntT
Funciton: gluconate transporter
Spro_4651
gntT
gluconate transporter
Position: -132
Score: 5.1
Sequence: TTACGTGATTCGCATCACACAA
Locus tag: Spro_1860
Name: proP
Funciton: L-Proline/Glycine betaine transporter ProP
Spro_1860
proP
L-Proline/Glycine betaine transporter ProP
Position: -228
Score: 3.5
Sequence: TGTTGTTATGTTTATTAACCAA
Locus tag: Spro_4503
Name: aceB
Funciton: malate synthase A
Locus tag: Spro_4502
Name: aceA
Funciton: isocitrate lyase
Spro_4503
aceB
malate synthase A
Spro_4502
aceA
isocitrate lyase
Position: -181
Score: 3.4
Sequence: AAACGTGATTTAACGCCTCATT
Locus tag: Spro_0290
Name: hupA
Funciton: DNA-binding protein HU-alpha (HU-2)
Spro_0290
hupA
DNA-binding protein HU-alpha (HU-2)
Position: -77
Score: 3.6
Sequence: GTTTGTGATCGCTATCCCTCAA
Locus tag: Spro_3863
Name: dcuB
Funciton: C4-dicarboxylate transporter DcuB
Spro_3863
dcuB
C4-dicarboxylate transporter DcuB
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