Regulons of Bifidobacterium dentium Bd1

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	AouR		Arabinose oligosaccharide utilization	3	6
TF	AraQ		Central carbohydrate metabolism; Arabinose utilization; Arabinose oligosaccharide utilization	16	10
TF	ArgR	Arginine	Arginine biosynthesis	3	2
TF	BDP_1267		Carbohydrate metabolism	2	2
TF	BDP_2071		Carbohydrate metabolism	2	2
TF	BDP_2100		Carbohydrate metabolism	2	3
TF	BDP_2111		Carbohydrate metabolism	2	4
TF	BDP_2131		Carbohydrate metabolism	4	7
TF	BL0176		Carbohydrate metabolism	3	2
TF	BL0185		Carbohydrate metabolism	4	7
TF	BLA_0143		Carbohydrate metabolism	6	6
TF	BLA_0357		Galactooligosaccharide utilization	2	2
TF	BgaR	Beta-galactosides	Galactosides utilization	4	4
TF	BglR	Beta-glucoside	Beta-glucosides utilization	2	3
TF	BgrT1		Beta-glucosides utilization	2	2
TF	BgrT2		Beta-glucosides utilization	3	3
TF	BgrT3		Galactosides utilization	1	2
TF	BgrT4		Beta-glucosides utilization	4	5
TF	BgrT5		Cellobiose utilization	1	1
TF	BgrT7		Galactosides utilization	3	9
TF	CldR	Cellobiose	Cellodextrin utilization	2	2
TF	Crp		Tricarboxylic acid cycle; Energy metabolism	7	3
TF	CscR	Sucrose	Sucrose utilization	1	2
TF	CsoR	Copper ion, (Cu+)	Copper homeostasis	2	2
TF	FruR		Fructose utilization	2	2
TF	GalR		Galactose utilization	2	3
TF	GlcR		Glucose utilization	1	1
TF	GntR	Gluconate	Gluconate utilization	2	2
TF	GosR	Galactobiose	Galactooligosaccharide utilization; Galactan utilization	5	5
TF	HrcA	Heat shock	Heat shock response	3	4
TF	HxlR		Hexulose metabolism	1	2
TF	LacR	Lactose	Lactose utilization	3	2
TF	LexA	DNA damage	SOS response	10	9
TF	LtbR		Leucine biosynthesis	2	2
TF	MalR1/MalR2/MalR3	Maltose	Maltose utilization; Maltodextrin utilization	15	15
TF	MalR4	Maltose	Maltose utilization; Maltodextrin utilization	2	6
TF	MalR5	Maltose	Maltose utilization; Maltodextrin utilization	2	4
TF	MsmR		Carbohydrate metabolism	2	3
TF	MsmR1	Alpha-galactosides	Alpha-galactosides utilization	1	2
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	2	3
TF	NrtR	Adenosine diphosphate ribose	NAD biosynthesis	1	1
TF	PtsR		Carbohydrate metabolism	2	2
TF	RafR		Raffinose utilization	3	3
TF	RbsR1	Ribose	Ribose utilization	3	3
TF	RbsR3	Ribose	Ribonucleoside utilization	6	4
TF	ScrR	Sucrose	Sucrose utilization	5	5
TF	XosR		Xylooligosacharides utilization	2	5
TF	XylR	Xylose	Xylose utilization	3	3
TF	Zur	Zinc ion, (Zn2+)	Zinc homeostasis	5	4
RNA	FMN	Flavin mononucleotide	Riboflavin biosynthesis	1	1
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	5	5

	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulons of Bifidobacterium dentium Bd1

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --