Regulon of TPP in Bifidobacterium dentium Bd1

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Regulog:	TPP - Bifidobacteriaceae
Under regulation:
- Genes	12
- Operons	5

Member of regulog collections

By taxonomy - Bifidobacteriaceae
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -440 Score: 40 Sequence: GCACAACCGAACGGG... Locus tag: BDP_0149 Name: thiS Funciton: Sulfur carrier protein ThiS Locus tag: BDP_0148 Name: thiF Funciton: Sulfur carrier protein adenylyltransferase ThiF Locus tag: BDP_0147 Name: thiG Funciton: Thiazole biosynthesis protein ThiG
	BDP_0149	thiS	Sulfur carrier protein ThiS
	BDP_0148	thiF	Sulfur carrier protein adenylyltransferase ThiF
	BDP_0147	thiG	Thiazole biosynthesis protein ThiG
Position: -134 Score: 55.9 Sequence: CTGTCACAGACACGG... Locus tag: BDP_1328 Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: BDP_1327 Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine Locus tag: BDP_1326 Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
	BDP_1328	ykoE	Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
	BDP_1327	ykoD	Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
	BDP_1326	ykoC	Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Position: -165 Score: 55.2 Sequence: CGGGCACAGACACGG... Locus tag: BDP_2140 Name: tenA2 Funciton: Thiaminase II (EC 3.5.99.2)
	BDP_2140	tenA2	Thiaminase II (EC 3.5.99.2)
Position: -107 Score: 62.7 Sequence: CGGCGTAATGCAGGG... Locus tag: BDP_1341 Name: tenA Funciton: Thiaminase II (EC 3.5.99.2)
	BDP_1341	tenA	Thiaminase II (EC 3.5.99.2)
Position: -103 Score: 57.4 Sequence: TGTACATGCAGGGGA... Locus tag: BDP_1597 Name: thiM Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50) Locus tag: BDP_1598 Name: thiEC Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / Thiamin biosynthesis protein ThiC Locus tag: BDP_1599 Name: thiD Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7) Locus tag: BDP_1600 Name: COG0011 Funciton: Thiamin/hydroxymethyl pyrimidine-binding protein-like, putative
	BDP_1597	thiM	Hydroxyethylthiazole kinase (EC 2.7.1.50)
	BDP_1598	thiEC	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) / Thiamin biosynthesis protein ThiC
	BDP_1599	thiD	Phosphomethylpyrimidine kinase (EC 2.7.4.7)
	BDP_1600	COG0011	Thiamin/hydroxymethyl pyrimidine-binding protein-like, putative

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD