Regulon of RafR in Bifidobacterium dentium Bd1
| Regulator type: | Transcription factor |
| TF locus tag: | BDP_2227 |
| Regulator family: | ROK |
| Regulation mode: | activator |
| Biological process: | Raffinose utilization |
| Effector: | |
| Regulog: | RafR - Bifidobacteriaceae |
| Statistics of regulated genes: | |
| - Genes | 5 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Bifidobacteriaceae
- By TF family - ROK
- By pathway - Raffinose utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -115
Score: 5.3 Sequence: GATTTTGTTATTCTGAGAAAGTA
Locus tag: BDP_2227
Name: rafR Funciton: Raffinose utilization transcriptional regulator, ROK family |
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rafR
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Raffinose utilization transcriptional regulator, ROK family
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Position: -106
Score: 5.3 Sequence: TACTTTCCGAAAATAAGAAACAC
Locus tag: BDP_2229
Name: agaL Funciton: Alpha-galactosidase (EC 3.2.1.22) |
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agaL
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Alpha-galactosidase (EC 3.2.1.22)
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Position: -159
Score: 5.3 Sequence: TACTTTCTCAGAATAACAAAATC
Locus tag: BDP_2226
Name: rafB Funciton: Raffinose ABC transporter, substrate-binding protein
Locus tag: BDP_2225
Name: rafC Funciton: Raffinose ABC transporter, permease protein 1
Locus tag: BDP_2224
Name: rafD Funciton: Raffinose ABC transporter, permease protein 2 |
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rafB
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Raffinose ABC transporter, substrate-binding protein
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rafC
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Raffinose ABC transporter, permease protein 1
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rafD
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Raffinose ABC transporter, permease protein 2
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |