Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RafR in Bifidobacterium dentium Bd1

Properties
Regulator type: Transcription factor
TF locus tag: BDP_2227
Regulator family: ROK
Regulation mode: activator
Biological process: Raffinose utilization
Effector:
Regulog: RafR - Bifidobacteriaceae
Statistics of regulated genes:
- Genes 5
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -115
Score: 5.3
Sequence: GATTTTGTTATTCTGAGAAAGTA
Locus tag: BDP_2227
Name: rafR
Funciton: Raffinose utilization transcriptional regulator, ROK family
rafR
Raffinose utilization transcriptional regulator, ROK family

Position: -106
Score: 5.3
Sequence: TACTTTCCGAAAATAAGAAACAC
Locus tag: BDP_2229
Name: agaL
Funciton: Alpha-galactosidase (EC 3.2.1.22)
agaL
Alpha-galactosidase (EC 3.2.1.22)

Position: -159
Score: 5.3
Sequence: TACTTTCTCAGAATAACAAAATC
Locus tag: BDP_2226
Name: rafB
Funciton: Raffinose ABC transporter, substrate-binding protein
Locus tag: BDP_2225
Name: rafC
Funciton: Raffinose ABC transporter, permease protein 1
Locus tag: BDP_2224
Name: rafD
Funciton: Raffinose ABC transporter, permease protein 2
rafB
Raffinose ABC transporter, substrate-binding protein
rafC
Raffinose ABC transporter, permease protein 1
rafD
Raffinose ABC transporter, permease protein 2
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD